Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LMX1A

Gene Name Gene ID Reads Annotation
LMX1A ENSGALG00000003424 335 LIM homeobox transcription factor 1, alpha [Source:NCBI gene;Acc:777133]











Genes with expression patterns similar to LMX1A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LMX1A ENSGALG00000003424 335 8 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 LIM homeobox transcription factor 1, alpha [Source:NCBI gene;Acc:777133]
2. IWS1 ENSGALG00000001803 2305 1.664 - - - - 0.709 - 0.955 - - - IWS1, SUPT6H interacting protein [Source:HGNC Symbol;Acc:HGNC:25467]
3. KCNG1 ENSGALG00000007980 26 1.499 - - - - 0.711 0.788 - - - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
4. MITF ENSGALG00000039583 865 0.982 - - - - - - 0.982 - - - melanogenesis associated transcription factor [Source:NCBI gene;Acc:395886]
5. WHSC1 1712 0.981 - - - - - - 0.981 - - - Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
6. SRA1 ENSGALG00000040453 266 0.971 - - - - - - 0.971 - - - steroid receptor RNA activator 1 [Source:NCBI gene;Acc:427608]
7. C7orf63 C7orf63 147 0.971 - - - - - - 0.971 - - -
8. KLF11 ENSGALG00000016440 65 0.971 - - - - - - 0.971 - - - Kruppel like factor 11 [Source:NCBI gene;Acc:421934]
9. PIGF ENSGALG00000020057 201 0.97 - - - - - - 0.970 - - - phosphatidylinositol glycan anchor biosynthesis class F [Source:HGNC Symbol;Acc:HGNC:8962]
10. TP53BP1 ENSGALG00000042201 708 0.969 - - - - - - 0.969 - - - tumor protein p53 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11999]
11. DTX2 ENSGALG00000001905 1475 0.969 - - - - - - 0.969 - - - deltex E3 ubiquitin ligase 2 [Source:HGNC Symbol;Acc:HGNC:15973]
12. LPXN 133 0.969 - - - - - - 0.969 - - - leupaxin, transcript variant X4
13. PUSL1_1 ENSGALG00000001701, ENSGALG00000001714 341 0.968 - - - - - - 0.968 - - - pseudouridylate synthase-like 1, transcript variant X8
14. BCAR3 358 0.967 - - - - - - 0.967 - - - breast cancer anti-estrogen resistance 3, transcript variant X9
15. PTDSS2 ENSGALG00000004300 682 0.967 - - - - - - 0.967 - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
16. SLC28A3 ENSGALG00000012593 131 0.967 - - - - - - 0.967 - - - solute carrier family 28 member 3 [Source:HGNC Symbol;Acc:HGNC:16484]
17. BTBD7 4136 0.964 - - - - - - 0.964 - - - BTB domain containing 7, transcript variant X2
18. SLAIN1 ENSGALG00000016913 461 0.964 - - - - - - 0.964 - - - SLAIN motif family member 1 [Source:HGNC Symbol;Acc:HGNC:26387]
19. BBS4 ENSGALG00000001798 667 0.963 - - - - - - 0.963 - - - Bardet-Biedl syndrome 4 [Source:NCBI gene;Acc:415318]
20. ARHGEF3 ENSGALG00000005481 683 0.961 - - - - - - 0.961 - - - Rho guanine nucleotide exchange factor 3 [Source:NCBI gene;Acc:416000]
21. CLK3 ENSGALG00000001362 2171 0.96 - - - - - - 0.960 - - - CDC like kinase 3 [Source:NCBI gene;Acc:415295]
22. ASTN2 ENSGALG00000007038 1748 0.96 - - - - - - 0.960 - - - astrotactin 2 [Source:HGNC Symbol;Acc:HGNC:17021]
23. PIGL ENSGALG00000004492 669 0.959 - - - - - - 0.959 - - - phosphatidylinositol glycan anchor biosynthesis class L, transcript variant X4
24. PLPPR1 ENSGALG00000015542 3179 0.958 - - - - - - 0.958 - - - phospholipid phosphatase related 1 [Source:HGNC Symbol;Acc:HGNC:25993]
25. C7orf55 C7orf55 7083 0.958 - - - - - - 0.958 - - -
26. BSDC1 ENSGALG00000003405 3701 0.957 - - - - - - 0.957 - - - BSD domain containing 1 [Source:NCBI gene;Acc:419658]
27. TNFRSF11B ENSGALG00000043167 911 0.957 - - - - - - 0.957 - - - TNF receptor superfamily member 11b [Source:NCBI gene;Acc:378803]
28. MRM1 ENSGALG00000039523 2009 0.956 - - - - - - 0.956 - - - mitochondrial rRNA methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26202]
29. EML1 1941 0.956 - - - - - - 0.956 - - - echinoderm microtubule associated protein like 1, transcript variant X11
30. OSBPL1A ENSGALG00000015086 2702 0.955 - - - - - - 0.955 - - - oxysterol binding protein like 1A [Source:HGNC Symbol;Acc:HGNC:16398]
31. LRR1 ENSGALG00000012230 1062 0.954 - - - - - - 0.954 - - - leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
32. FXYD6 ENSGALG00000025937 4073 0.953 - - - - - - 0.953 - - - FXYD domain containing ion transport regulator 6 [Source:NCBI gene;Acc:770406]
33. SEL1L3 ENSGALG00000039549 1400 0.952 - - - - - - 0.952 - - - SEL1L family member 3 [Source:HGNC Symbol;Acc:HGNC:29108]
34. TUFT1 ENSGALG00000032955 1317 0.951 - - - - - - 0.951 - - - tuftelin 1 [Source:HGNC Symbol;Acc:HGNC:12422]
35. TTI1 ENSGALG00000006791 1218 0.951 - - - - - - 0.951 - - - TELO2 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29029]
36. CCDC137 ENSGALG00000004505 2205 0.95 - - - - - - 0.950 - - - coiled-coil domain containing 137 [Source:HGNC Symbol;Acc:HGNC:33451]
37. MYH15 ENSGALG00000015358 6304 0.95 - - - - - - 0.950 - - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
38. FDFT1 ENSGALG00000016665 3053 0.949 - - - - - - 0.949 - - - farnesyl-diphosphate farnesyltransferase 1 [Source:NCBI gene;Acc:422038]
39. YWHAQ ENSGALG00000016433 3450 0.949 - - - - - - 0.949 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:NCBI gene;Acc:421932]
40. CLASP1 ENSGALG00000011645 1378 0.949 - - - - - - 0.949 - - - cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
41. ZIC3 ENSGALG00000031144 863 0.949 - - - - - - 0.949 - - - Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
42. ABHD13 ENSGALG00000016853 4975 0.948 - - - - - - 0.948 - - - abhydrolase domain containing 13 [Source:NCBI gene;Acc:418763]
43. C6H10ORF46 C6H10ORF46 1107 0.945 - - - - - - 0.945 - - -
44. C11H19ORF12 C11H19ORF12 5149 0.944 - - - - - - 0.944 - - -
45. RFFL ENSGALG00000002225 928 0.944 - - - - - - 0.944 - - - ring finger and FYVE like domain containing E3 ubiquitin protein ligase [Source:NCBI gene;Acc:417529]
46. PRDM10 632 0.944 - - - - - - 0.944 - - - PR domain 10, transcript variant X10
47. ESCO1 ENSGALG00000014936 739 0.943 - - - - - - 0.943 - - - establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24645]
48. ANGPTL2 ENSGALG00000000927 2580 0.942 - - - - - - 0.942 - - - angiopoietin-like 2 [Source:NCBI gene;Acc:776031]
49. HYAL1 ENSGALG00000000785 1778 0.942 - - - - - - 0.942 - - - hyaluronoglucosaminidase 1, transcript variant X3
50. AP1S3 ENSGALG00000005171 2981 0.941 - - - - - - 0.941 - - - adaptor related protein complex 1 subunit sigma 3 [Source:NCBI gene;Acc:424807]
51. UHMK1 ENSGALG00000002734 2308 0.94 - - - - - - 0.940 - - - U2AF homology motif kinase 1 [Source:HGNC Symbol;Acc:HGNC:19683]
52. SUMF1 ENSGALG00000008286 941 0.939 - - - - - - 0.939 - - - sulfatase modifying factor 1 [Source:HGNC Symbol;Acc:HGNC:20376]
53. COL17A1 ENSGALG00000029617 167 0.938 - - - - - - 0.938 - - - collagen type XVII alpha 1 chain [Source:NCBI gene;Acc:396503]
54. ADIPOR1 ENSGALG00000000094 1862 0.937 - - - - - - 0.937 - - - adiponectin receptor 1 [Source:NCBI gene;Acc:421148]
55. NRCAM ENSGALG00000009514 490 0.937 - - - - - - 0.937 - - - neuronal cell adhesion molecule [Source:NCBI gene;Acc:396202]
56. THOC3 ENSGALG00000024172 7617 0.932 - - - - - - 0.932 - - - THO complex 3 [Source:NCBI gene;Acc:416232]
57. EFNB1 ENSGALG00000036539 2706 0.93 - - - - - - 0.930 - - - ephrin B1 [Source:NCBI gene;Acc:395896]
58. KIAA1468 2062 0.928 - - - - - - 0.928 - - - KIAA1468, transcript variant X5
59. ZNF830 ENSGALG00000013156 3896 0.928 - - - - - - 0.928 - - - zinc finger protein 830
60. TAGLN3 ENSGALG00000015379 7865 0.926 - - - - - - 0.926 - - - transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
61. GADD45 GADD45 8780 0.925 - - - - - - 0.925 - - -
62. C9orf85 ENSGALG00000026001 4110 0.924 - - - - - - 0.924 - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
63. NUDCD1 ENSGALG00000040879 2965 0.924 - - - - - - 0.924 - - - NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]
64. APCDD1 ENSGALG00000000894 1482 0.924 - - - - - - 0.924 - - - APC down-regulated 1 [Source:NCBI gene;Acc:426765]
65. CLN6 ENSGALG00000007981 5656 0.924 - - - - - - 0.924 - - - CLN6, transmembrane ER protein [Source:NCBI gene;Acc:415558]
66. GLTPD1 GLTPD1 2968 0.923 - - - - - - 0.923 - - -
67. SDK1 ENSGALG00000004420 571 0.922 - - - - - - 0.922 - - - sidekick cell adhesion molecule 1 [Source:NCBI gene;Acc:373894]
68. COL22A1 ENSGALG00000038022 544 0.92 - - - - - - 0.920 - - - collagen type XXII alpha 1 chain [Source:NCBI gene;Acc:420315]
69. FAM53A ENSGALG00000015713 3795 0.919 - - - - - - 0.919 - - - family with sequence similarity 53 member A [Source:NCBI gene;Acc:378905]
70. NOL12 ENSGALG00000012410 5658 0.919 - - - - - - 0.919 - - - nucleolar protein 12
71. NAPEPLD ENSGALG00000008285 1295 0.918 - - - - - - 0.918 - - - N-acyl phosphatidylethanolamine phospholipase D [Source:NCBI gene;Acc:417719]
72. TMEM14A ENSGALG00000019894 5279 0.918 - - - - - - 0.918 - - - transmembrane protein 14A [Source:HGNC Symbol;Acc:HGNC:21076]
73. OSBPL8 ENSGALG00000010246 4565 0.918 - - - - - - 0.918 - - - oxysterol binding protein like 8 [Source:HGNC Symbol;Acc:HGNC:16396]
74. SLC25A48 ENSGALG00000006341 2606 0.918 - - - - - - 0.918 - - - solute carrier family 25 member 48 [Source:HGNC Symbol;Acc:HGNC:30451]
75. ANXA11 ENSGALG00000043826 5189 0.918 - - - - - - 0.918 - - - annexin A11 [Source:NCBI gene;Acc:423637]
76. ASAP2 ENSGALG00000016419 1393 0.914 - - - - - - 0.914 - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
77. ACTR10 ENSGALG00000012041 2752 0.914 - - - - - - 0.914 - - - actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
78. LMO4 ENSGALG00000006252 3686 0.913 - - - - - - 0.913 - - - LIM domain only 4 [Source:NCBI gene;Acc:373901]
79. ITFG1 ENSGALG00000004049 2934 0.912 - - - - - - 0.912 - - - integrin alpha FG-GAP repeat containing 1 [Source:NCBI gene;Acc:415742]
80. AP1AR ENSGALG00000028807 2398 0.909 - - - - - - 0.909 - - - adaptor related protein complex 1 associated regulatory protein [Source:HGNC Symbol;Acc:HGNC:28808]
81. CHTF18 ENSGALG00000040157 2140 0.909 - - - - - - 0.909 - - - chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:416531]
82. ARL6IP4 ENSGALG00000003682 2467 0.909 - - - - - - 0.909 - - - ADP ribosylation factor like GTPase 6 interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:18076]
83. RAD51A RAD51A 2132 0.908 - - - - - - 0.908 - - -
84. RNF113A ENSGALG00000000538 3985 0.908 - - - - - - 0.908 - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
85. PQLC1 ENSGALG00000043150 3133 0.907 - - - - - - 0.907 - - - PQ loop repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:26188]
86. C12orf66 ENSGALG00000027682 2110 0.906 - - - - - - 0.906 - - - chromosome 12 open reading frame 66 [Source:HGNC Symbol;Acc:HGNC:26517]
87. CRELD2 ENSGALG00000008551 2084 0.906 - - - - - - 0.906 - - - cysteine rich with EGF like domains 2 [Source:NCBI gene;Acc:417735]
88. MPPE1 ENSGALG00000013794 988 0.901 - - - - - - 0.901 - - - metallophosphoesterase 1 [Source:NCBI gene;Acc:421031]
89. BEND5 ENSGALG00000010505 3298 0.9 - - - - - - 0.900 - - - BEN domain containing 5 [Source:HGNC Symbol;Acc:HGNC:25668]
90. PYCR1 ENSGALG00000007300 7987 0.9 - - - - - - 0.900 - - - pyrroline-5-carboxylate reductase 1 [Source:NCBI gene;Acc:769203]
91. BAG4 ENSGALG00000003254 5751 0.9 - - - - - - 0.900 - - - BCL2 associated athanogene 4 [Source:HGNC Symbol;Acc:HGNC:940]
92. TMEM33 ENSGALG00000014248 6069 0.9 - - - - - - 0.900 - - - transmembrane protein 33 [Source:HGNC Symbol;Acc:HGNC:25541]
93. CAPN1 ENSGALG00000041685 4011 0.899 - - - - - - 0.899 - - - calpain 1 [Source:NCBI gene;Acc:693249]
94. DDX42 ENSGALG00000000581 8780 0.898 - - - - - - 0.898 - - - DEAD-box helicase 42 [Source:NCBI gene;Acc:419959]
95. FREM3 ENSGALG00000020561 1824 0.898 - - - - - - 0.898 - - - FRAS1 related extracellular matrix 3
96. ENSGALG00000027002 ENSGALG00000027002 7570 0.897 - - - - - - - 0.897 - -
97. TIRAP ENSGALG00000040224 2578 0.897 - - - - - - 0.897 - - - TIR domain containing adaptor protein [Source:NCBI gene;Acc:419715]
98. FAM86A FAM86A 1860 0.896 - - - - - - 0.896 - - -
99. COG7 ENSGALG00000006156 4072 0.895 - - - - - - 0.895 - - - component of oligomeric golgi complex 7 [Source:NCBI gene;Acc:416578]
100. RAD17 ENSGALG00000015571 1374 0.895 - - - - - - 0.895 - - - RAD17 checkpoint clamp loader component [Source:NCBI gene;Acc:404778]

There are 297 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA