Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LMO4

Gene Name Gene ID Reads Annotation
LMO4 ENSGALG00000006252 3686 LIM domain only 4 [Source:NCBI gene;Acc:373901]











Genes with expression patterns similar to LMO4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LMO4 ENSGALG00000006252 3686 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domain only 4 [Source:NCBI gene;Acc:373901]
2. ASAP2 ENSGALG00000016419 1393 1.904 - - - - - - 0.922 0.982 - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
3. MAN1A1 ENSGALG00000014878 1061 1.902 - - 0.911 - - - - 0.991 - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
4. LRR1 ENSGALG00000012230 1062 1.841 - - 0.880 - - - 0.961 - - - leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
5. SECISBP2 ENSGALG00000010694 6990 1.83 - - 0.860 - - - - 0.970 - - SECIS binding protein 2 [Source:HGNC Symbol;Acc:HGNC:30972]
6. TMEM38B ENSGALG00000027472 2465 1.806 - - 0.923 - - - 0.883 - - - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]
7. TMEM14A ENSGALG00000019894 5279 1.768 - - 0.849 - - - 0.919 - - - transmembrane protein 14A [Source:HGNC Symbol;Acc:HGNC:21076]
8. GNMT ENSGALG00000043290 3288 1.757 - - 0.869 - - - 0.888 - - - glycine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4415]
9. SEMA3C ENSGALG00000040444 5404 1.754 - - 0.787 - - - - 0.967 - - semaphorin 3C [Source:NCBI gene;Acc:374090]
10. ZNF830 ENSGALG00000013156 3896 1.748 - - 0.799 - - - 0.949 - - - zinc finger protein 830
11. KIAA1551 ENSGALG00000045168 3435 1.719 - - 0.761 - - - - 0.958 - - KIAA1551, transcript variant X1
12. MRPL23 ENSGALG00000006561 13737 1.705 - - - - - - 0.907 0.798 - - mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:374255]
13. GARNL3 ENSGALG00000000847 3423 1.696 - - 0.815 - - - 0.881 - - - GTPase activating Rap/RanGAP domain like 3 [Source:NCBI gene;Acc:417087]
14. SURF2 ENSGALG00000003181 3500 1.678 - - 0.702 - - - - 0.976 - - surfeit 2 [Source:NCBI gene;Acc:417156]
15. DECR1 ENSGALG00000036990 6360 1.665 - - 0.826 - - - 0.839 - - - 2,4-dienoyl-CoA reductase 1 [Source:HGNC Symbol;Acc:HGNC:2753]
16. REXO4 ENSGALG00000030609 2926 1.659 - - 0.757 - - - 0.902 - - - REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
17. USP5 ENSGALG00000014525 21883 1.659 - - - - - - 0.895 0.764 - - ubiquitin specific peptidase 5 [Source:HGNC Symbol;Acc:HGNC:12628]
18. TBC1D12 ENSGALG00000034044 5588 1.638 - - 0.725 - - - 0.913 - - - TBC1 domain family member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
19. CYTL1 ENSGALG00000015015 4438 1.628 - - 0.735 - - - 0.893 - - - cytokine like 1 [Source:HGNC Symbol;Acc:HGNC:24435]
20. GHITM ENSGALG00000021262 7159 1.597 - - 0.747 - - - 0.850 - - - growth hormone inducible transmembrane protein [Source:NCBI gene;Acc:423621]
21. C5orf63 C5orf63 3718 1.583 - - 0.710 - - - 0.873 - - -
22. TBPL1 ENSGALG00000013981 3710 1.567 - - 0.799 - - - 0.768 - - - TATA-box binding protein like 1 [Source:NCBI gene;Acc:395517]
23. ARFRP1 ENSGALG00000006101 3743 1.557 - - 0.758 - - - 0.799 - - - ADP ribosylation factor related protein 1 [Source:HGNC Symbol;Acc:HGNC:662]
24. NIPSNAP3L ENSGALG00000027334 7514 1.553 - - 0.837 - - - 0.716 - - - nipsnap homolog 3-like
25. RHOT1 ENSGALG00000003397 5149 1.486 - - 0.760 - - - 0.726 - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
26. NUMA1 ENSGALG00000001258 8406 1.479 - - 0.714 - - - 0.765 - - - nuclear mitotic apparatus protein 1 [Source:NCBI gene;Acc:768717]
27. GMFB ENSGALG00000012208 894 0.996 - - - - - - - 0.996 - - glia maturation factor beta [Source:NCBI gene;Acc:423560]
28. NGFR ENSGALG00000035950 13452 0.996 - - - - - - - 0.996 - - nerve growth factor receptor [Source:NCBI gene;Acc:425805]
29. ENSGALG00000016701 ENSGALG00000016701 418 0.996 - - - - - - - 0.996 - -
30. ZNF148 ENSGALG00000012049 365 0.995 - - - - - - - 0.995 - - zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
31. PRKAG2 ENSGALG00000006219 504 0.995 - - - - - - - 0.995 - - protein kinase AMP-activated non-catalytic subunit gamma 2 [Source:NCBI gene;Acc:420435]
32. RFX3 ENSGALG00000010179 305 0.995 - - - - - - - 0.995 - - regulatory factor X3 [Source:HGNC Symbol;Acc:HGNC:9984]
33. AGO1 ENSGALG00000002249 125 0.995 - - - - - - - 0.995 - - argonaute 1, RISC catalytic component [Source:NCBI gene;Acc:428222]
34. FRYL ENSGALG00000014103 314 0.995 - - - - - - - 0.995 - - FRY like transcription coactivator [Source:HGNC Symbol;Acc:HGNC:29127]
35. CLEC3B ENSGALG00000030969 363 0.995 - - - - - - - 0.995 - - C-type lectin domain family 3 member B [Source:NCBI gene;Acc:395386]
36. ENSGALG00000021835 ENSGALG00000021835 424 0.995 - - - - - - - 0.995 - -
37. gga-mir-6681 ENSGALG00000027840 546 0.995 - - - - - - - 0.995 - - gga-mir-6681 [Source:miRBase;Acc:MI0022502]
38. LRRC42 ENSGALG00000010743 384 0.994 - - - - - - - 0.994 - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
39. TBC1D16 ENSGALG00000007054 2324 0.994 - - - - - - - 0.994 - - TBC1 domain family member 16 [Source:HGNC Symbol;Acc:HGNC:28356]
40. ENSGALG00000026309 ENSGALG00000026309 360 0.994 - - - - - - - 0.994 - -
41. N4BP2L1 ENSGALG00000017072 1371 0.994 - - - - - - - 0.994 - - NEDD4 binding protein 2 like 1, transcript variant X2
42. TBC1D19 ENSGALG00000029673 1868 0.994 - - - - - - - 0.994 - - TBC1 domain family member 19 [Source:HGNC Symbol;Acc:HGNC:25624]
43. C16orf93 C16orf93 3351 0.994 - - - - - - - 0.994 - -
44. CHGA ENSGALG00000010820 1028 0.994 - - - - - - - 0.994 - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
45. BIN1 ENSGALG00000011541 2273 0.994 - - - - - - - 0.994 - - bridging integrator 1 [Source:NCBI gene;Acc:424228]
46. xcc-b100_1894L ENSGALG00000007564 462 0.994 - - - - - - - 0.994 - - UPF0061 protein xcc-b100_1894-like
47. GPR155 ENSGALG00000014209 1281 0.993 - - - - - - - 0.993 - - G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
48. ALDH6 ALDH6 771 0.993 - - - - - - - 0.993 - -
49. SIAH2 ENSGALG00000010395 2126 0.992 - - - - - - - 0.992 - - siah E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:10858]
50. GHR_1 ENSGALG00000014855 198 0.992 - - - - - - - 0.992 - - growth hormone receptor [Source:NCBI gene;Acc:408184]
51. SZT2 ENSGALG00000028561 255 0.992 - - - - - - - 0.992 - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
52. BOC ENSGALG00000015152 4868 0.991 - - - - - - - 0.991 - - BOC cell adhesion associated, oncogene regulated [Source:HGNC Symbol;Acc:HGNC:17173]
53. MED20 ENSGALG00000003474 4583 0.991 - - - - - - - 0.991 - - mediator complex subunit 20 [Source:NCBI gene;Acc:419926]
54. ZC3H11A ENSGALG00000000541 2712 0.99 - - - - - - - 0.990 - - zinc finger CCCH-type containing 11A [Source:NCBI gene;Acc:421172]
55. C7H2ORF76 ENSGALG00000012113 1947 0.99 - - - - - - - 0.990 - - chromosome 7 open reading frame, human C2orf76 [Source:NCBI gene;Acc:424274]
56. SLC37A4 ENSGALG00000007716 2263 0.99 - - - - - - - 0.990 - - solute carrier family 37 member 4 [Source:HGNC Symbol;Acc:HGNC:4061]
57. PNPT1 ENSGALG00000043545 1306 0.99 - - - - - - - 0.990 - - polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
58. CCNI ENSGALG00000011457 3203 0.989 - - - - - - - 0.989 - - cyclin I [Source:HGNC Symbol;Acc:HGNC:1595]
59. ENSGALG00000025773 ENSGALG00000025773 977 0.989 - - - - - - - 0.989 - -
60. SENP2 ENSGALG00000031128 1162 0.989 - - - - - - - 0.989 - - SUMO specific peptidase 2 [Source:HGNC Symbol;Acc:HGNC:23116]
61. THAP4 ENSGALG00000006283 1707 0.989 - - - - - - - 0.989 - - THAP domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23187]
62. CDC37L1 ENSGALG00000014448 2283 0.989 - - - - - - - 0.989 - - cell division cycle 37 like 1 [Source:HGNC Symbol;Acc:HGNC:17179]
63. IBA57 ENSGALG00000005328 4362 0.989 - - - - - - - 0.989 - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
64. YY1 ENSGALG00000017388 1933 0.989 - - - - - - - 0.989 - - YY1 transcription factor [Source:NCBI gene;Acc:423455]
65. WBP4 ENSGALG00000016949 5858 0.986 - - - - - - - 0.986 - - WW domain binding protein 4 [Source:NCBI gene;Acc:418829]
66. ATP6V0E2 ENSGALG00000020754 2648 0.986 - - - - - - - 0.986 - - ATPase H+ transporting V0 subunit e2 [Source:NCBI gene;Acc:769770]
67. SLC4A3 ENSGALG00000011224 2161 0.984 - - - - - - - 0.984 - - solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
68. KIF3B ENSGALG00000006604 2968 0.983 - - - - - - - 0.983 - - kinesin family member 3B [Source:NCBI gene;Acc:419284]
69. COQ5 ENSGALG00000007185 5614 0.982 - - - - - - - 0.982 - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
70. ACTR3B ENSGALG00000006292 2235 0.981 - - - - - - - 0.981 - - ARP3 actin related protein 3 homolog B, transcript variant X1
71. CLASP2 ENSGALG00000032647 1821 0.981 - - - - - - - 0.981 - - cytoplasmic linker associated protein 2 [Source:NCBI gene;Acc:420724]
72. CAMK2G ENSGALG00000005088 5037 0.98 - - - - - - - 0.980 - - calcium/calmodulin dependent protein kinase II gamma [Source:HGNC Symbol;Acc:HGNC:1463]
73. GTSE1 ENSGALG00000004897 2865 0.98 - - - - - - - 0.980 - - G2 and S-phase expressed 1 [Source:NCBI gene;Acc:425204]
74. TSPAN5 ENSGALG00000012227 8703 0.977 - - - - - - - 0.977 - - tetraspanin 5 [Source:HGNC Symbol;Acc:HGNC:17753]
75. ECHDC3 ENSGALG00000006690 1299 0.977 - - - - - - - 0.977 - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
76. C5H15ORF57 C5H15ORF57 4113 0.977 - - - - - - - 0.977 - -
77. TRAPPC12 ENSGALG00000016387 2593 0.976 - - - - - - - 0.976 - - trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]
78. ST14 ENSGALG00000001331 1655 0.976 - - - - - - - 0.976 - - suppression of tumorigenicity 14 [Source:HGNC Symbol;Acc:HGNC:11344]
79. SCARF1 2103 0.975 - - - - - - - 0.975 - - scavenger receptor class F member 1, transcript variant X2
80. PDCD7 ENSGALG00000021027 3807 0.975 - - - - - - - 0.975 - - programmed cell death 7 [Source:HGNC Symbol;Acc:HGNC:8767]
81. CNOT2 ENSGALG00000010042 7612 0.975 - - - - - - - 0.975 - - CCR4-NOT transcription complex subunit 2 [Source:NCBI gene;Acc:417851]
82. FBXL7 ENSGALG00000031947 2480 0.975 - - - - - - - 0.975 - - F-box and leucine rich repeat protein 7 [Source:HGNC Symbol;Acc:HGNC:13604]
83. IDS ENSGALG00000009154 1177 0.973 - - - - - - - 0.973 - - iduronate 2-sulfatase [Source:NCBI gene;Acc:422392]
84. TTC17 ENSGALG00000039558 3301 0.973 - - - - - - - 0.973 - - tetratricopeptide repeat domain 17
85. PDHX ENSGALG00000033753 2799 0.972 - - - - - - - 0.972 - - pyruvate dehydrogenase complex component X [Source:NCBI gene;Acc:423154]
86. ENSGALG00000005785 ENSGALG00000005785 1570 0.971 - - - - - - - 0.971 - -
87. BRF1 ENSGALG00000011705 3406 0.97 - - - - - - - 0.970 - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
88. MMP17 3885 0.969 - - - - - - - 0.969 - - matrix metallopeptidase 17
89. CLASP1 ENSGALG00000011645 1378 0.968 - - - - - - 0.968 - - - cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
90. RBM34 ENSGALG00000029915 5618 0.967 - - - - - - - 0.967 - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
91. POLR1E ENSGALG00000005395 8953 0.967 - - - - - - - 0.967 - - RNA polymerase I subunit E [Source:HGNC Symbol;Acc:HGNC:17631]
92. CYB5R3 ENSGALG00000014122 7664 0.965 - - - - - - - 0.965 - - cytochrome b5 reductase 3 [Source:NCBI gene;Acc:418220]
93. CCDC75 CCDC75 4865 0.964 - - - - - - - 0.964 - -
94. ABTB1 ENSGALG00000005999 2446 0.964 - - - - - - - 0.964 - - ankyrin repeat and BTB domain containing 1 [Source:NCBI gene;Acc:416026]
95. FXYD6 ENSGALG00000025937 4073 0.964 - - - - - - 0.964 - - - FXYD domain containing ion transport regulator 6 [Source:NCBI gene;Acc:770406]
96. VDAC2 ENSGALG00000005002 12592 0.964 - - - - - - - 0.964 - - voltage dependent anion channel 2 [Source:NCBI gene;Acc:395498]
97. MYH15 ENSGALG00000015358 6304 0.96 - - - - - - 0.960 - - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
98. TADA1L TADA1L 6659 0.96 - - - - - - - 0.960 - -
99. TNFRSF11B ENSGALG00000043167 911 0.96 - - - - - - 0.960 - - - TNF receptor superfamily member 11b [Source:NCBI gene;Acc:378803]
100. FAM160B1 ENSGALG00000031404 3153 0.96 - - - - - - - 0.960 - - family with sequence similarity 160 member B1 [Source:HGNC Symbol;Acc:HGNC:29320]

There are 651 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA