Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LINC00540

Gene Name Gene ID Reads Annotation
LINC00540 ENSG00000276476 59 long intergenic non-protein coding RNA 540 [Source:NCBI gene;Acc:100506622]



Genes with expression patterns similar to LINC00540

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. LINC00540 ENSG00000276476 59 2 1.000 1.000 long intergenic non-protein coding RNA 540 [Source:NCBI gene;Acc:100506622]
2. SDR16C5 ENSG00000170786 8 0.888 0.888 - short chain dehydrogenase/reductase family 16C member 5 [Source:HGNC Symbol;Acc:HGNC:30311]
3. LINC01024 8 0.872 0.872 - long intergenic non-protein coding RNA 1024, transcript variant 3
4. THSD4-AS2 6 0.872 0.872 - THSD4 antisense RNA 2
5. LOC151475 6 0.872 0.872 - uncharacterized LOC151475
6. LOC442028 5 0.872 0.872 - uncharacterized LOC442028
7. LOC101929592 5 0.872 0.872 - uncharacterized LOC101929592
8. BOLA2B ENSG00000169627 9 0.872 0.872 - bolA family member 2B [Source:HGNC Symbol;Acc:HGNC:32479]
9. ITGAX ENSG00000140678 10 0.872 0.872 - integrin subunit alpha X [Source:HGNC Symbol;Acc:HGNC:6152]
10. LOC101927058 7 0.872 0.872 - uncharacterized LOC101927058
11. ACOT12 ENSG00000172497 6 0.872 0.872 - acyl-CoA thioesterase 12 [Source:HGNC Symbol;Acc:HGNC:24436]
12. LINC00857 ENSG00000237523 22 0.872 0.872 - long intergenic non-protein coding RNA 857 [Source:HGNC Symbol;Acc:HGNC:45114]
13. YIPF7 ENSG00000177752 26 0.872 0.872 - Yip1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:26825]
14. CST5 ENSG00000170367 7 0.844 0.844 - cystatin D [Source:HGNC Symbol;Acc:HGNC:2477]
15. AATK-AS1 7 0.828 0.828 - AATK antisense RNA 1
16. C3orf49 ENSG00000163632 6 0.828 0.828 - chromosome 3 open reading frame 49 [Source:HGNC Symbol;Acc:HGNC:25190]
17. RPL32 ENSG00000144713 110817 0.804 0.804 - ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
18. LINC00511 ENSG00000227036 19 0.797 0.797 - long intergenic non-protein coding RNA 511 [Source:HGNC Symbol;Acc:HGNC:43564]
19. SPG20-AS1 11 0.792 0.792 - SPG20 antisense RNA 1, transcript variant 2
20. LOC100132891 LOC100132891 23 0.79 0.790 -
21. HNRNPA1P33 ENSG00000213412 13 0.787 0.787 - heterogeneous nuclear ribonucleoprotein A1 pseudogene 33 [Source:HGNC Symbol;Acc:HGNC:44990]
22. F10-AS1 ENSG00000231882 9 0.775 0.775 - F10 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40225]
23. GABRA4 ENSG00000109158 43 0.77 0.770 - gamma-aminobutyric acid type A receptor alpha4 subunit [Source:HGNC Symbol;Acc:HGNC:4078]
24. MIR1273A ENSG00000221753 17 0.764 0.764 - microRNA 1273a [Source:HGNC Symbol;Acc:HGNC:35340]
25. KCNF1 ENSG00000162975 46 0.762 0.762 - potassium voltage-gated channel modifier subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:6246]
26. ANXA2R ENSG00000177721 34 0.758 0.758 - annexin A2 receptor [Source:HGNC Symbol;Acc:HGNC:33463]
27. SLC35G1 ENSG00000176273 60 0.758 0.758 - solute carrier family 35 member G1 [Source:HGNC Symbol;Acc:HGNC:26607]
28. KCNJ13 ENSG00000115474 12 0.757 0.757 - potassium voltage-gated channel subfamily J member 13 [Source:HGNC Symbol;Acc:HGNC:6259]
29. LOC100508046 11 0.751 0.751 - uncharacterized LOC100508046
30. EFCAB5 ENSG00000176927 14 0.746 0.746 - EF-hand calcium binding domain 5 [Source:HGNC Symbol;Acc:HGNC:24801]
31. CCL28 ENSG00000151882 54 0.734 0.734 - C-C motif chemokine ligand 28 [Source:HGNC Symbol;Acc:HGNC:17700]
32. LINC00626 ENSG00000225826 44 0.733 0.733 - long intergenic non-protein coding RNA 626 [Source:HGNC Symbol;Acc:HGNC:44257]
33. LINC00629 ENSG00000227060 74 0.731 0.731 - long intergenic non-protein coding RNA 629 [Source:HGNC Symbol;Acc:HGNC:44262]
34. PSMC4 ENSG00000013275, ENSG00000281221 6978 0.727 0.727 - proteasome 26S subunit, ATPase 4 [Source:HGNC Symbol;Acc:HGNC:9551]
35. LINC01393 ENSG00000225535 17 0.725 0.725 - long intergenic non-protein coding RNA 1393 [Source:HGNC Symbol;Acc:HGNC:50669]
36. FAM136A ENSG00000035141 3827 0.724 0.724 - family with sequence similarity 136 member A [Source:HGNC Symbol;Acc:HGNC:25911]
37. DNAJC7 ENSG00000168259 132 0.722 0.722 - DnaJ heat shock protein family (Hsp40) member C7 [Source:HGNC Symbol;Acc:HGNC:12392]
38. GYG2 ENSG00000056998 2624 0.72 0.720 - glycogenin 2 [Source:HGNC Symbol;Acc:HGNC:4700]
39. ANKRD26P1 ENSG00000261239 12 0.719 0.719 - ankyrin repeat domain 26 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:32955]
40. ELOVL2-AS1 ENSG00000230314 51 0.719 0.719 - ELOVL2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44156]
41. UBA7 ENSG00000182179 233 0.718 0.718 - ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
42. COG1 ENSG00000166685 323 0.714 0.714 - component of oligomeric golgi complex 1 [Source:HGNC Symbol;Acc:HGNC:6545]
43. HERC2P4 ENSG00000230267 17 0.71 0.710 - hect domain and RLD 2 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:4872]
44. TERC ENSG00000270141 167 0.71 0.710 - telomerase RNA component [Source:HGNC Symbol;Acc:HGNC:11727]
45. DNHD1 ENSG00000179532 194 0.705 0.705 - dynein heavy chain domain 1 [Source:HGNC Symbol;Acc:HGNC:26532]
46. RPS29 ENSG00000213741 173188 0.705 0.705 - ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
47. NAMA ENSG00000271086 11 0.704 0.704 - non-protein coding RNA, associated with MAP kinase pathway and growth arrest [Source:NCBI gene;Acc:100996569]
48. MAT1A ENSG00000151224 13 0.704 0.704 - methionine adenosyltransferase 1A [Source:HGNC Symbol;Acc:HGNC:6903]
49. SYDE2 ENSG00000097096 64 0.704 0.704 - synapse defective Rho GTPase homolog 2 [Source:HGNC Symbol;Acc:HGNC:25841]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA