Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LIN54

Gene Name Gene ID Reads Annotation
LIN54 ENSGALG00000011133 75 lin-54 DREAM MuvB core complex component [Source:HGNC Symbol;Acc:HGNC:25397]











Genes with expression patterns similar to LIN54

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LIN54 ENSGALG00000011133 75 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 lin-54 DREAM MuvB core complex component [Source:HGNC Symbol;Acc:HGNC:25397]
2. ENSGALG00000021882 ENSGALG00000021882 63 1.65 - - 0.852 - - - 0.798 - - -
3. STK38 ENSGALG00000000523 44 0.903 - - 0.903 - - - - - - - serine/threonine kinase 38 [Source:HGNC Symbol;Acc:HGNC:17847]
4. C3ORF64 C3ORF64 49 0.903 - - 0.903 - - - - - - -
5. SPTSSBL ENSGALG00000026131 70 0.896 - - 0.896 - - - - - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
6. ANKRD42 8 0.896 - - 0.896 - - - - - - - ankyrin repeat domain 42
7. LHX6 ENSGALG00000001347 7 0.896 - - 0.896 - - - - - - - LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
8. PLAG1 ENSGALG00000015407 17 0.896 - - 0.896 - - - - - - - PLAG1 zinc finger [Source:NCBI gene;Acc:429484]
9. ENSGALG00000000407 ENSGALG00000000407 32 0.894 - - 0.894 - - - - - - -
10. PSMD4 ENSGALG00000028505 16 0.892 - - 0.892 - - - - - - - proteasome 26S subunit, non-ATPase 4 [Source:NCBI gene;Acc:100216364]
11. NSL1/DC31 NSL1/DC31 43 0.892 - - 0.892 - - - - - - -
12. IKBIP ENSGALG00000026284 31 0.892 - - 0.892 - - - - - - - IKBKB interacting protein [Source:HGNC Symbol;Acc:HGNC:26430]
13. ENSGALG00000026975 ENSGALG00000026975 8 0.891 - - 0.891 - - - - - - -
14. YDJC ENSGALG00000029198 14 0.891 - - 0.891 - - - - - - - YdjC chitooligosaccharide deacetylase homolog [Source:HGNC Symbol;Acc:HGNC:27158]
15. LRRC56 ENSGALG00000041955 16 0.891 - - 0.891 - - - - - - - leucine rich repeat containing 56 [Source:HGNC Symbol;Acc:HGNC:25430]
16. MMP9 ENSGALG00000006992 78 0.89 - - 0.890 - - - - - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
17. HOXA9 ENSGALG00000028983 9298 0.888 - - 0.888 - - - - - - - homeobox A9 [Source:NCBI gene;Acc:396096]
18. SATB2 ENSGALG00000008135 347 0.888 - - 0.888 - - - - - - - SATB homeobox 2 [Source:NCBI gene;Acc:424063]
19. TMEM230 ENSGALG00000036876 55 0.886 - - 0.886 - - - - - - - transmembrane protein 230 [Source:NCBI gene;Acc:419518]
20. PPARGC1A ENSGALG00000042851 364 0.886 - - 0.886 - - - - - - - PPARG coactivator 1 alpha [Source:NCBI gene;Acc:422815]
21. HTR2C ENSGALG00000005853 90 0.885 - - 0.885 - - - - - - - Gallus gallus 5-hydroxytryptamine receptor 2C (HTR2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001318421]
22. DNAH7 ENSGALG00000007841 32 0.884 - - 0.884 - - - - - - - dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
23. ENSGALG00000029120 ENSGALG00000029120 73 0.875 - - 0.875 - - - - - - -
24. LOC769139 ENSGALG00000026754 753 0.869 - - 0.869 - - - - - - - feather keratin 1-like, transcript variant X2
25. DINB1 DINB1 113 0.866 - - 0.866 - - - - - - -
26. LCOR ENSGALG00000028512 30 0.864 - - 0.864 - - - - - - - ligand dependent nuclear receptor corepressor, transcript variant X16
27. MTMR10 85 0.863 - - 0.863 - - - - - - - myotubularin related protein 10
28. FNDC7 ENSGALG00000001983 24 0.863 - - 0.863 - - - - - - - fibronectin type III domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26668]
29. XYLT1 ENSGALG00000006757 169 0.862 - - 0.862 - - - - - - - xylosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15516]
30. CLIC3 ENSGALG00000038789 233 0.861 - - 0.861 - - - - - - - chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
31. MDM2 ENSGALG00000009942 397 0.858 - - 0.858 - - - - - - - MDM2 proto-oncogene [Source:NCBI gene;Acc:395609]
32. PRKCZ ENSGALG00000001270 12 0.856 - - 0.856 - - - - - - - protein kinase C zeta [Source:HGNC Symbol;Acc:HGNC:9412]
33. BTBD6 ENSGALG00000033813 163 0.856 - - 0.856 - - - - - - - BTB domain containing 6 [Source:HGNC Symbol;Acc:HGNC:19897]
34. SLCO4C1 ENSGALG00000026768 30 0.854 - - 0.854 - - - - - - - solute carrier organic anion transporter family member 4C1, transcript variant X4
35. UBXN6 ENSGALG00000001146 122 0.854 - - 0.854 - - - - - - - UBX domain protein 6 [Source:HGNC Symbol;Acc:HGNC:14928]
36. ENSGALG00000006278 ENSGALG00000006278 202 0.853 - - 0.853 - - - - - - -
37. ZBTB21 ENSGALG00000016147 13 0.852 - - 0.852 - - - - - - - zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]
38. REEP2 ENSGALG00000017365 338 0.85 - - 0.850 - - - - - - - receptor accessory protein 2 [Source:HGNC Symbol;Acc:HGNC:17975]
39. PLEKHJ1 ENSGALG00000000835 55 0.848 - - 0.848 - - - - - - - pleckstrin homology domain containing J1 [Source:NCBI gene;Acc:428324]
40. B3GNTL1 ENSGALG00000001433 22 0.847 - - 0.847 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 [Source:HGNC Symbol;Acc:HGNC:21727]
41. CYP3A4 ENSGALG00000004436 75 0.844 - - 0.844 - - - - - - - Gallus gallus cytochrome P450 family 3 subfamily A member 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001329508]
42. HNF4G ENSGALG00000042621 484 0.843 - - 0.843 - - - - - - - hepatocyte nuclear factor 4 gamma [Source:HGNC Symbol;Acc:HGNC:5026]
43. SAMSN1 ENSGALG00000040926 88 0.842 - - 0.842 - - - - - - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
44. SUSD4 ENSGALG00000009388 48 0.841 - - 0.841 - - - - - - - sushi domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25470]
45. TSPAN18 ENSGALG00000036901 14 0.838 - - 0.838 - - - - - - - tetraspanin 18 [Source:NCBI gene;Acc:395586]
46. DAB2IP ENSGALG00000001419 100 0.836 - - 0.836 - - - - - - - DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
47. DSG2 ENSGALG00000015142 67 0.834 - - 0.834 - - - - - - - desmoglein 2 [Source:HGNC Symbol;Acc:HGNC:3049]
48. IMPG2 ENSGALG00000015322 74 0.827 - - 0.827 - - - - - - - interphotoreceptor matrix proteoglycan 2 [Source:NCBI gene;Acc:418393]
49. NPY ENSGALG00000010983 441 0.822 - - 0.822 - - - - - - - neuropeptide Y [Source:NCBI gene;Acc:396464]
50. AFTPH ENSGALG00000008828 21 0.821 - - 0.821 - - - - - - - aftiphilin [Source:HGNC Symbol;Acc:HGNC:25951]
51. SPSB3 ENSGALG00000002285 1329 0.821 - - 0.821 - - - - - - - splA/ryanodine receptor domain and SOCS box containing 3 [Source:HGNC Symbol;Acc:HGNC:30629]
52. KIAA1549 ENSGALG00000012796 60 0.817 - - 0.817 - - - - - - - KIAA1549 [Source:HGNC Symbol;Acc:HGNC:22219]
53. CEP128 ENSGALG00000010562 133 0.815 - - 0.815 - - - - - - - centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]
54. C1orf131 C1orf131 141 0.813 - - 0.813 - - - - - - -
55. TMEM159 ENSGALG00000027173 67 0.812 - - 0.812 - - - - - - - transmembrane protein 159 [Source:HGNC Symbol;Acc:HGNC:30136]
56. FAM105B 56 0.811 - - 0.811 - - - - - - - family with sequence similarity 105, member B, transcript variant X18
57. RICTOR ENSGALG00000003775 247 0.809 - - 0.809 - - - - - - - RPTOR independent companion of MTOR complex 2 [Source:HGNC Symbol;Acc:HGNC:28611]
58. ITGB2 ENSGALG00000007511 46 0.807 - - 0.807 - - - - - - - integrin subunit beta 2 [Source:NCBI gene;Acc:396181]
59. WDR48 ENSGALG00000006052 3575 0.807 - - 0.807 - - - - - - - WD repeat domain 48 [Source:NCBI gene;Acc:420427]
60. SUPT20H ENSGALG00000017047 59 0.805 - - 0.805 - - - - - - - SPT20 homolog, SAGA complex component [Source:NCBI gene;Acc:418896]
61. UBE3C ENSGALG00000006461 57 0.805 - - 0.805 - - - - - - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
62. PDCD6IP ENSGALG00000033500 580 0.804 - - 0.804 - - - - - - - programmed cell death 6 interacting protein [Source:NCBI gene;Acc:420725]
63. GNPTG ENSGALG00000006441 50 0.803 - - - - - - - 0.803 - - N-acetylglucosamine-1-phosphate transferase gamma subunit [Source:NCBI gene;Acc:416591]
64. TMEM150C ENSGALG00000011175 218 0.802 - - 0.802 - - - - - - - transmembrane protein 150C [Source:HGNC Symbol;Acc:HGNC:37263]
65. gga-mir-2954 ENSGALG00000026107 462 0.796 - - 0.796 - - - - - - - gga-mir-2954 [Source:miRBase;Acc:MI0013634]
66. MGST2 ENSGALG00000009803 427 0.794 - - 0.794 - - - - - - - microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:HGNC:7063]
67. RHBG ENSGALG00000013232 233 0.794 - - - - - - - 0.794 - - Rh family B glycoprotein [Source:NCBI gene;Acc:378792]
68. TPST2 ENSGALG00000005626 945 0.792 - - 0.792 - - - - - - - tyrosylprotein sulfotransferase 2 [Source:NCBI gene;Acc:416910]
69. CYP17A1 ENSGALG00000008121 227 0.791 - - 0.791 - - - - - - - cytochrome P450 family 17 subfamily A member 1 [Source:NCBI gene;Acc:425056]
70. ITPKB ENSGALG00000009068 324 0.791 - - 0.791 - - - - - - - inositol-trisphosphate 3-kinase B [Source:HGNC Symbol;Acc:HGNC:6179]
71. ROGDI ENSGALG00000001841 313 0.789 - - 0.789 - - - - - - - rogdi homolog [Source:HGNC Symbol;Acc:HGNC:29478]
72. DNAAF1 ENSGALG00000003258 115 0.787 - - 0.787 - - - - - - - dynein axonemal assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:30539]
73. KIF9 ENSGALG00000005517 70 0.781 - - 0.781 - - - - - - - kinesin family member 9 [Source:HGNC Symbol;Acc:HGNC:16666]
74. MYT1L ENSGALG00000016384 147 0.781 - - 0.781 - - - - - - - myelin transcription factor 1 like [Source:HGNC Symbol;Acc:HGNC:7623]
75. PM20D2 ENSGALG00000015779 1301 0.781 - - 0.781 - - - - - - - peptidase M20 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21408]
76. NFIL3 ENSGALG00000015209 15 0.78 - - - - - - - 0.780 - - nuclear factor, interleukin 3 regulated [Source:NCBI gene;Acc:395326]
77. MOB1B ENSGALG00000011573 567 0.778 - - 0.778 - - - - - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
78. CNTF ENSGALG00000026207 47 0.777 - - 0.777 - - - - - - - ciliary neurotrophic factor [Source:NCBI gene;Acc:396488]
79. ROPN1L ENSGALG00000013006 97 0.777 - - 0.777 - - - - - - - rhophilin associated tail protein 1 like [Source:HGNC Symbol;Acc:HGNC:24060]
80. CAMLG ENSGALG00000006411 662 0.775 - - 0.775 - - - - - - - calcium modulating ligand [Source:NCBI gene;Acc:395808]
81. ABHD14A 174 0.775 - - 0.775 - - - - - - - abhydrolase domain containing 14A
82. RAD52 ENSGALG00000039171 6989 0.775 - - 0.775 - - - - - - - RAD52 homolog, DNA repair protein [Source:NCBI gene;Acc:418152]
83. SIRT1 ENSGALG00000002761 9028 0.775 - - 0.775 - - - - - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
84. IQGAP1 ENSGALG00000030162 1047 0.774 - - 0.774 - - - - - - - IQ motif containing GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:6110]
85. THBS2 ENSGALG00000011200 35 0.773 - - - - - - - 0.773 - - thrombospondin 2 [Source:NCBI gene;Acc:414837]
86. SBF2 ENSGALG00000005716 134 0.77 - - 0.770 - - - - - - - SET binding factor 2 [Source:NCBI gene;Acc:423043]
87. RHOV ENSGALG00000028047 75 0.769 - - 0.769 - - - - - - - ras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]
88. C12orf29 ENSGALG00000011168 26 0.769 - - - - - - - 0.769 - - chromosome 12 open reading frame 29 [Source:HGNC Symbol;Acc:HGNC:25322]
89. YIPF1 5945 0.768 - - 0.768 - - - - - - - Yip1 domain family member 1, transcript variant 4
90. TRMT44 ENSGALG00000015594 1490 0.767 - - 0.767 - - - - - - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
91. MXRA5 ENSGALG00000016635 352 0.761 - - - - - - - 0.761 - - matrix remodeling associated 5 [Source:HGNC Symbol;Acc:HGNC:7539]
92. RPS6KA6 ENSGALG00000007097 94 0.76 - - 0.760 - - - - - - - ribosomal protein S6 kinase A6 [Source:HGNC Symbol;Acc:HGNC:10435]
93. SPAST ENSGALG00000010620 132 0.76 - - 0.760 - - - - - - - spastin [Source:NCBI gene;Acc:421481]
94. AUH ENSGALG00000021843 349 0.758 - - 0.758 - - - - - - - AU RNA binding methylglutaconyl-CoA hydratase [Source:NCBI gene;Acc:427269]
95. PDK1 ENSGALG00000013235 238 0.758 - - 0.758 - - - - - - - pyruvate dehydrogenase kinase 1 [Source:NCBI gene;Acc:425972]
96. TWIST1 ENSGALG00000041640 1176 0.758 - - 0.758 - - - - - - - twist family bHLH transcription factor 1 [Source:NCBI gene;Acc:395491]
97. MAP9 ENSGALG00000020253 785 0.756 - - 0.756 - - - - - - - microtubule associated protein 9, transcript variant X7
98. GJB6 ENSGALG00000017136 500 0.755 - - 0.755 - - - - - - - gap junction protein beta 6 [Source:NCBI gene;Acc:395771]
99. TNIK ENSGALG00000009298 38 0.755 - - - - - 0.755 - - - - TRAF2 and NCK interacting kinase [Source:HGNC Symbol;Acc:HGNC:30765]
100. NAV3 ENSGALG00000010311 133 0.753 - - 0.753 - - - - - - - neuron navigator 3 [Source:NCBI gene;Acc:417869]

There are 59 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA