Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LIN28A

Gene Name Gene ID Reads Annotation
LIN28A ENSGALG00000036022 542 lin-28 homolog A [Source:NCBI gene;Acc:428206]











Genes with expression patterns similar to LIN28A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LIN28A ENSGALG00000036022 542 8 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 lin-28 homolog A [Source:NCBI gene;Acc:428206]
2. SPRYD7 ENSGALG00000017010 1910 1.692 - - - - - - 0.706 0.986 - - SPRY domain containing 7 [Source:NCBI gene;Acc:418871]
3. LAMA4 ENSGALG00000015001 993 0.995 - - - - - - - 0.995 - - laminin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
4. PSD2 ENSGALG00000030836 236 0.995 - - - - - - - 0.995 - - pleckstrin and Sec7 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:19092]
5. GALNT2 ENSGALG00000011106 167 0.994 - - - - - - - 0.994 - - polypeptide N-acetylgalactosaminyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:4124]
6. C14orf105 C14orf105 135 0.994 - - - - - - - 0.994 - -
7. PTER ENSGALG00000008728 162 0.994 - - - - - - - 0.994 - - phosphotriesterase related [Source:HGNC Symbol;Acc:HGNC:9590]
8. RFLB RFLB 140 0.994 - - - - - - - 0.994 - -
9. H2AFY2 ENSGALG00000004794 576 0.994 - - - - - - - 0.994 - - H2A histone family, member Y2 [Source:NCBI gene;Acc:423721]
10. ENSGALG00000029113 ENSGALG00000029113 737 0.994 - - - - - - - 0.994 - -
11. PIK3R3 ENSGALG00000010335 374 0.993 - - - - - - - 0.993 - - phosphoinositide-3-kinase regulatory subunit 3, transcript variant X1
12. MYO3A ENSGALG00000007647 643 0.993 - - - - - - - 0.993 - - myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
13. DENND1A ENSGALG00000001157 503 0.993 - - - - - - - 0.993 - - DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
14. PTN ENSGALG00000040493 864 0.993 - - - - - - - 0.993 - - pleiotrophin [Source:NCBI gene;Acc:418125]
15. TMEM245 ENSGALG00000013138 501 0.992 - - - - - - - 0.992 - - transmembrane protein 245 [Source:HGNC Symbol;Acc:HGNC:1363]
16. TMEM237 ENSGALG00000008381 1317 0.992 - - - - - - - 0.992 - - transmembrane protein 237 [Source:NCBI gene;Acc:424084]
17. PCP4 ENSGALG00000022819 880 0.992 - - - - - - - 0.992 - - Purkinje cell protein 4 [Source:NCBI gene;Acc:771220]
18. ARHGEF12 ENSGALG00000006663 1369 0.991 - - - - - - - 0.991 - - Rho guanine nucleotide exchange factor 12 [Source:HGNC Symbol;Acc:HGNC:14193]
19. MMP16 ENSGALG00000032031 827 0.991 - - - - - - - 0.991 - - matrix metallopeptidase 16 [Source:NCBI gene;Acc:396116]
20. PLEKHA3 ENSGALG00000009135 1700 0.991 - - - - - - - 0.991 - - pleckstrin homology domain containing A3 [Source:NCBI gene;Acc:424128]
21. C2CD5 ENSGALG00000013210 3060 0.99 - - - - - - - 0.990 - - C2 calcium dependent domain containing 5 [Source:HGNC Symbol;Acc:HGNC:29062]
22. CDK14 ENSGALG00000009062 995 0.99 - - - - - - - 0.990 - - cyclin dependent kinase 14 [Source:HGNC Symbol;Acc:HGNC:8883]
23. SEMA7A ENSGALG00000001412 1505 0.99 - - - - - - - 0.990 - - semaphorin 7A (John Milton Hagen blood group) [Source:NCBI gene;Acc:415298]
24. FAAH ENSGALG00000010433 3309 0.99 - - - - - - - 0.990 - - fatty acid amide hydrolase [Source:HGNC Symbol;Acc:HGNC:3553]
25. SRFBP1 ENSGALG00000005316 6826 0.99 - - - - - - - 0.990 - - serum response factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26333]
26. PLPPR1 ENSGALG00000015542 3179 0.99 - - - - - - - 0.990 - - phospholipid phosphatase related 1 [Source:HGNC Symbol;Acc:HGNC:25993]
27. GAS6 ENSGALG00000016820 481 0.99 - - - - - - - 0.990 - - growth arrest specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]
28. gga-mir-1723 ENSGALG00000025386 6662 0.989 - - - - - - - 0.989 - - gga-mir-1723 [Source:miRBase;Acc:MI0007460]
29. ZUFSP 549 0.989 - - - - - - - 0.989 - - zinc finger with UFM1 specific peptidase domain
30. SMAD1 ENSGALG00000009977 3540 0.989 - - - - - - - 0.989 - - SMAD family member 1 [Source:NCBI gene;Acc:395680]
31. CACTIN ENSGALG00000024391 1408 0.989 - - - - - - - 0.989 - - cactin, spliceosome C complex subunit [Source:HGNC Symbol;Acc:HGNC:29938]
32. B4GALT3 ENSGALG00000022891 2825 0.988 - - - - - - - 0.988 - - beta-1,4-galactosyltransferase 3
33. HNRNPK ENSGALG00000012591 1109 0.988 - - - - - - - 0.988 - - heterogeneous nuclear ribonucleoprotein K, transcript variant X8
34. ILKAP ENSGALG00000006253 7388 0.988 - - - - - - - 0.988 - - ILK associated serine/threonine phosphatase [Source:HGNC Symbol;Acc:HGNC:15566]
35. LDLRAP1 ENSGALG00000001051 1657 0.987 - - - - - - - 0.987 - - low density lipoprotein receptor adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:18640]
36. LEMD2 ENSGALG00000002870 2803 0.987 - - - - - - - 0.987 - - LEM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21244]
37. FNDC5 ENSGALG00000003567 3328 0.987 - - - - - - - 0.987 - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
38. KLHL13 KLHL13 2712 0.987 - - - - - - - 0.987 - -
39. LTN1 ENSGALG00000015804 3784 0.986 - - - - - - - 0.986 - - listerin E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:418482]
40. HTRA1 ENSGALG00000041140 1750 0.986 - - - - - - - 0.986 - - HtrA serine peptidase 1 [Source:HGNC Symbol;Acc:HGNC:9476]
41. ARRDC2 ENSGALG00000003527 1797 0.986 - - - - - - - 0.986 - - arrestin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25225]
42. RERG ENSGALG00000028186 1124 0.985 - - - - - - - 0.985 - - RAS like estrogen regulated growth inhibitor [Source:HGNC Symbol;Acc:HGNC:15980]
43. SEMA5B ENSGALG00000011686 4184 0.985 - - - - - - - 0.985 - - semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
44. CDXB CDXB 143 0.984 - - - - - - - 0.984 - -
45. GATAD2A ENSGALG00000042900 6337 0.984 - - - - - - - 0.984 - - GATA zinc finger domain containing 2A [Source:NCBI gene;Acc:420109]
46. RIPK1 ENSGALG00000012827 3405 0.984 - - - - - - - 0.984 - - receptor interacting serine/threonine kinase 1 [Source:NCBI gene;Acc:378921]
47. ETAA1 ENSGALG00000027922 1684 0.983 - - - - - - - 0.983 - - ETAA1, ATR kinase activator [Source:HGNC Symbol;Acc:HGNC:24648]
48. C1orf123 ENSGALG00000026516 3227 0.983 - - - - - - - 0.983 - - chromosome 1 open reading frame 123 [Source:HGNC Symbol;Acc:HGNC:26059]
49. ARID1B ENSGALG00000013683 3397 0.983 - - - - - - - 0.983 - - AT-rich interaction domain 1B [Source:HGNC Symbol;Acc:HGNC:18040]
50. C4H4ORF41 C4H4ORF41 1520 0.983 - - - - - - - 0.983 - -
51. MEIS1 ENSGALG00000041626 3865 0.983 - - - - - - - 0.983 - - Meis homeobox 1 [Source:NCBI gene;Acc:395589]
52. AEN ENSGALG00000044204 2633 0.982 - - - - - - - 0.982 - - apoptosis enhancing nuclease, transcript variant X1
53. ARNT ENSGALG00000000751 3495 0.982 - - - - - - - 0.982 - - aryl hydrocarbon receptor nuclear translocator [Source:NCBI gene;Acc:374026]
54. NPB NPB 8056 0.981 - - - - - - - 0.981 - -
55. PALD1 ENSGALG00000004465 3553 0.981 - - - - - - - 0.981 - - phosphatase domain containing, paladin 1 [Source:NCBI gene;Acc:373898]
56. ARL1 ENSGALG00000011651 3230 0.981 - - - - - - - 0.981 - - ADP ribosylation factor like GTPase 1 [Source:NCBI gene;Acc:417934]
57. THBS4 ENSGALG00000014804 4228 0.98 - - - - - - - 0.980 - - Gallus gallus thrombospondin 4 (THBS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001321549]
58. ARHGAP32 ENSGALG00000043511 7916 0.979 - - - - - - - 0.979 - - Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
59. SKIV2L2 ENSGALG00000014709 2926 0.979 - - - - - - - 0.979 - - Ski2 like RNA helicase 2 [Source:NCBI gene;Acc:427137]
60. C6ORF162 C6ORF162 4217 0.977 - - - - - - - 0.977 - -
61. ENSGALG00000007355 ENSGALG00000007355 2149 0.977 - - - - - - - 0.977 - -
62. SMAD2W ENSGALG00000014184 1773 0.976 - - - - - - - 0.976 - - SMAD family member 2-W, transcript variant X3
63. TMEM47 ENSGALG00000027198 3619 0.975 - - - - - - - 0.975 - - transmembrane protein 47 [Source:HGNC Symbol;Acc:HGNC:18515]
64. C11H19ORF12 C11H19ORF12 5149 0.975 - - - - - - - 0.975 - -
65. SMPD4 ENSGALG00000006455 2270 0.974 - - - - - - - 0.974 - - sphingomyelin phosphodiesterase 4, transcript variant X1
66. AK1 ENSGALG00000029150 5935 0.974 - - - - - - - 0.974 - - adenylate kinase 1 [Source:NCBI gene;Acc:396002]
67. BLZF1 ENSGALG00000015225 3594 0.974 - - - - - - - 0.974 - - basic leucine zipper nuclear factor 1 [Source:HGNC Symbol;Acc:HGNC:1065]
68. SNX3 ENSGALG00000015304 1631 0.973 - - - - - - - 0.973 - - sorting nexin 3 [Source:NCBI gene;Acc:421772]
69. UBXN2B ENSGALG00000030585 2177 0.973 - - - - - - - 0.973 - - UBX domain protein 2B [Source:NCBI gene;Acc:421135]
70. SEC24B ENSGALG00000035482 3430 0.972 - - - - - - - 0.972 - - SEC24 homolog B, COPII coat complex component [Source:NCBI gene;Acc:422523]
71. NOL6 ENSGALG00000030730 7191 0.971 - - - - - - - 0.971 - - nucleolar protein 6
72. YOD1 ENSGALG00000037597 2989 0.968 - - - - - - - 0.968 - - YOD1 deubiquitinase [Source:NCBI gene;Acc:428266]
73. CALSYNTENIN-1 CALSYNTENIN-1 11195 0.967 - - - - - - - 0.967 - -
74. PRPSAP2 ENSGALG00000005064 5549 0.967 - - - - - - - 0.967 - - phosphoribosyl pyrophosphate synthetase associated protein 2 [Source:NCBI gene;Acc:416521]
75. SYAP1 ENSGALG00000016548 3347 0.966 - - - - - - - 0.966 - - synapse associated protein 1 [Source:NCBI gene;Acc:418619]
76. TMEM144 ENSGALG00000026253 1744 0.965 - - - - - - - 0.965 - - transmembrane protein 144 [Source:HGNC Symbol;Acc:HGNC:25633]
77. SGPL1 ENSGALG00000004553 4520 0.964 - - - - - - - 0.964 - - sphingosine-1-phosphate lyase 1 [Source:NCBI gene;Acc:423714]
78. HEATR6 ENSGALG00000005516 3347 0.964 - - - - - - - 0.964 - - HEAT repeat containing 6 [Source:HGNC Symbol;Acc:HGNC:24076]
79. ATRIP ENSGALG00000004670 3647 0.963 - - - - - - - 0.963 - - ATR interacting protein [Source:NCBI gene;Acc:415949]
80. LRRFIP2 ENSGALG00000033102 8250 0.963 - - - - - - - 0.963 - - LRR binding FLII interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:6703]
81. GID8 ENSGALG00000005700 3992 0.962 - - - - - - - 0.962 - - GID complex subunit 8 homolog [Source:NCBI gene;Acc:419235]
82. TDRD3 ENSGALG00000016936 3412 0.958 - - - - - - - 0.958 - - tudor domain containing 3 [Source:NCBI gene;Acc:418823]
83. DNTTIP1 ENSGALG00000003575 4687 0.953 - - - - - - - 0.953 - - deoxynucleotidyltransferase terminal interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16160]
84. HIBADH ENSGALG00000033207 3540 0.949 - - - - - - - 0.949 - - 3-hydroxyisobutyrate dehydrogenase [Source:NCBI gene;Acc:420632]
85. HSDL2 ENSGALG00000015663 8966 0.947 - - - - - - - 0.947 - - hydroxysteroid dehydrogenase like 2 [Source:HGNC Symbol;Acc:HGNC:18572]
86. CTNNBIP1 ENSGALG00000026306 8049 0.946 - - - - - - - 0.946 - - catenin beta interacting protein 1 [Source:NCBI gene;Acc:771460]
87. PAXIP1 ENSGALG00000036064 3120 0.945 - - - - - - - 0.945 - - PAX interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:8624]
88. AHR ENSGALG00000010836 2276 0.945 - - - - - - - 0.945 - - aryl hydrocarbon receptor [Source:NCBI gene;Acc:373907]
89. THAP5 ENSGALG00000009494 6540 0.944 - - - - - - - 0.944 - - THAP domain containing 5 [Source:NCBI gene;Acc:417784]
90. SMU1 ENSGALG00000002014 8136 0.944 - - - - - - - 0.944 - - SMU1, DNA replication regulator and spliceosomal factor [Source:NCBI gene;Acc:427377]
91. CZH9ORF80 CZH9ORF80 12760 0.943 - - - - - - - 0.943 - -
92. TAF7 4725 0.942 - - - - - - - 0.942 - - TATA-box binding protein associated factor 7, transcript variant X1
93. RAD50 ENSGALG00000006794 4308 0.942 - - - - - - - 0.942 - - RAD50 double strand break repair protein, transcript variant X4
94. SPATS2L ENSGALG00000008152 3037 0.941 - - - - - - - 0.941 - - spermatogenesis associated serine rich 2 like [Source:NCBI gene;Acc:424067]
95. MLX ENSGALG00000003199 5286 0.938 - - - - - - - 0.938 - - MLX, MAX dimerization protein [Source:NCBI gene;Acc:420026]
96. CUL4B ENSGALG00000008559 16864 0.922 - - - - - - - 0.922 - - cullin 4B [Source:HGNC Symbol;Acc:HGNC:2555]
97. gga-mir-6683 ENSGALG00000026767 5682 0.92 - - - - - - - 0.920 - - gga-mir-6683 [Source:miRBase;Acc:MI0022504]
98. ALX-4 ALX-4 2351 0.917 - - - - - - - 0.917 - -
99. PRMT3 ENSGALG00000003958 14160 0.916 - - - - - - - 0.916 - - protein arginine methyltransferase 3 [Source:NCBI gene;Acc:422975]
100. TAF11 ENSGALG00000002735 7576 0.915 - - - - - - - 0.915 - - TATA-box binding protein associated factor 11 [Source:NCBI gene;Acc:419899]

There are 139 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA