Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LIMS1

Gene Name Gene ID Reads Annotation
LIMS1 ENSGALG00000029970 7244 LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]











Genes with expression patterns similar to LIMS1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LIMS1 ENSGALG00000029970 7244 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
2. TAF1A ENSGALG00000009441 2431 1.708 - - - - - - 0.804 0.904 - - TATA-box binding protein associated factor, RNA polymerase I subunit A [Source:NCBI gene;Acc:421338]
3. MED27 ENSGALG00000003683 6808 1.686 - - - - - - 0.785 0.901 - - mediator complex subunit 27 [Source:NCBI gene;Acc:417172]
4. IBTK ENSGALG00000015864 3154 1.679 - - - - - - - 0.937 0.742 - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
5. TERF1 ENSGALG00000037453 4497 1.663 - - - - - 0.770 - 0.893 - - telomeric repeat binding factor 1 [Source:NCBI gene;Acc:378896]
6. CYB5R2 ENSGALG00000032372 7967 1.658 - - - - - - 0.765 0.893 - - cytochrome b5 reductase 2 [Source:NCBI gene;Acc:408182]
7. RNH1 ENSGALG00000006904 14542 1.652 - - - - - - 0.778 0.874 - - ribonuclease/angiogenin inhibitor 1 [Source:NCBI gene;Acc:423111]
8. EFCAB10 ENSGALG00000045949 514 1.626 - - - - - 0.806 - 0.820 - - EF-hand calcium binding domain 10 [Source:HGNC Symbol;Acc:HGNC:34531]
9. KIF21B ENSGALG00000034347 4144 1.626 - - - - - - 0.739 0.887 - - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
10. CRTAP ENSGALG00000034163 6453 1.613 - - - - - - 0.767 0.846 - - cartilage associated protein [Source:NCBI gene;Acc:395992]
11. RAP1A ENSGALG00000001476 5287 1.61 - - - - - - 0.762 - 0.848 - RAP1A, member of RAS oncogene family
12. UBN1 ENSGALG00000031416 2848 1.604 - - - - - - - 0.896 - 0.708 ubinuclein 1 [Source:NCBI gene;Acc:416398]
13. TMEM161A ENSGALG00000025809 2813 1.6 - - - - - - 0.715 0.885 - - transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
14. BET1L ENSGALG00000004172 5305 1.587 - - - - - - 0.783 0.804 - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
15. ATP6V0A2 ENSGALG00000003194 4824 1.584 - - - - - - 0.714 0.870 - - ATPase H+ transporting V0 subunit a2 [Source:NCBI gene;Acc:395473]
16. AGGF1 ENSGALG00000004311 3011 1.579 - - - - - - - 0.878 - 0.701 angiogenic factor with G-patch and FHA domains 1, transcript variant X1
17. GPALPP1 ENSGALG00000031567 4221 1.571 - - - - - - 0.752 0.819 - - GPALPP motifs containing 1 [Source:NCBI gene;Acc:418842]
18. IRAK1BP1 ENSGALG00000015892 2236 1.57 - - - - - - 0.756 0.814 - - interleukin 1 receptor associated kinase 1 binding protein 1 [Source:NCBI gene;Acc:421857]
19. SEC63 ENSGALG00000015308 11596 1.567 - - - - - - 0.803 0.764 - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
20. HCFC2 ENSGALG00000029616 4525 1.549 - - - - - - 0.781 - 0.768 - host cell factor C2 [Source:HGNC Symbol;Acc:HGNC:24972]
21. TOR1AIP1 ENSGALG00000029238 5843 1.512 - - - - - - 0.753 0.759 - - torsin 1A interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29456]
22. SENP6 ENSGALG00000015901 8013 1.498 - - - - - - 0.785 0.713 - - SUMO specific peptidase 6 [Source:HGNC Symbol;Acc:HGNC:20944]
23. UTP23 ENSGALG00000032400 3601 1.496 - - - - - - 0.750 - - 0.746 UTP23, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:28224]
24. LRRC57 ENSGALG00000009112 1443 1.485 - - - - - 0.734 0.751 - - - leucine rich repeat containing 57 [Source:NCBI gene;Acc:423236]
25. NUP50 ENSGALG00000014222 11743 1.479 - - - - - - 0.731 0.748 - - nucleoporin 50 [Source:NCBI gene;Acc:418240]
26. FANCL ENSGALG00000030022 7423 1.472 - - - - - - 0.735 - - 0.737 FA complementation group L [Source:NCBI gene;Acc:421202]
27. DIAPH3 ENSGALG00000016937 1069 1.464 - - - - - 0.763 - - - 0.701 diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]
28. PPFIA1 ENSGALG00000035774 5258 1.462 - - - - - - 0.761 - - 0.701 PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
29. CIB1 ENSGALG00000008302 13946 1.455 - - - - - - 0.721 - - 0.734 calcium and integrin binding 1 [Source:NCBI gene;Acc:770162]
30. MYOCD ENSGALG00000001021 351 1.451 - - - - - - - 0.727 - 0.724 myocardin [Source:NCBI gene;Acc:427790]
31. TMX3 ENSGALG00000013757 6387 1.435 - - - - - - 0.720 - - 0.715 Gallus gallus thioredoxin related transmembrane protein 3 (TMX3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001321606]
32. CCDC126 ENSGALG00000010976 1892 1.421 - - - - - - 0.709 - 0.712 - coiled-coil domain containing 126 [Source:HGNC Symbol;Acc:HGNC:22398]
33. AIP ENSGALG00000040247 4166 0.948 - - - - - - - 0.948 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
34. RCAN3 ENSGALG00000004282 7778 0.929 - - - - - - - 0.929 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
35. BRCA1 ENSGALG00000002781 2052 0.929 - - - - - - - 0.929 - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
36. FBXL17 ENSGALG00000000276 2443 0.928 - - - - - - - 0.928 - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
37. BIVM ENSGALG00000016861 3987 0.924 - - - - - - - 0.924 - - basic, immunoglobulin-like variable motif containing [Source:NCBI gene;Acc:374099]
38. SLC19A1 ENSGALG00000030511 1397 0.923 - - - - - - - 0.923 - - solute carrier family 19 member 1 [Source:NCBI gene;Acc:424034]
39. HDAC1 ENSGALG00000003297 3528 0.923 - - - - - - - 0.923 - - histone deacetylase 1 [Source:NCBI gene;Acc:373961]
40. TAF5 ENSGALG00000008241 5227 0.922 - - - - - - - 0.922 - - TATA-box binding protein associated factor 5 [Source:NCBI gene;Acc:423872]
41. MTIF2 ENSGALG00000031265 2366 0.92 - - - - - - - 0.920 - - mitochondrial translational initiation factor 2 [Source:NCBI gene;Acc:421213]
42. CREPT CREPT 17142 0.917 - - - - - - - 0.917 - -
43. SMG8 ENSGALG00000005093 5557 0.916 - - - - - - - 0.916 - - SMG8 nonsense mediated mRNA decay factor
44. PDE3B ENSGALG00000006035 3732 0.915 - - - - - - - 0.915 - - phosphodiesterase 3B [Source:NCBI gene;Acc:423064]
45. UPF1 ENSGALG00000003220 9496 0.914 - - - - - - - 0.914 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
46. PTPN4 3030 0.913 - - - - - - - 0.913 - - protein tyrosine phosphatase, non-receptor type 4, transcript variant X2
47. CPT2 ENSGALG00000010681 3211 0.913 - - - - - - - 0.913 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
48. TXNDC11 ENSGALG00000003154 2224 0.912 - - - - - - - 0.912 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
49. PECR ENSGALG00000011497 1714 0.909 - - - - - - - 0.909 - - peroxisomal trans-2-enoyl-CoA reductase [Source:NCBI gene;Acc:424224]
50. CLMP ENSGALG00000006507 8079 0.909 - - - - - - - 0.909 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
51. NT5C3B ENSGALG00000003651 5190 0.909 - - - - - - - 0.909 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
52. NCAPH ENSGALG00000032270 2103 0.909 - - - - - - - 0.909 - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]
53. ALAS1 3660 0.908 - - - - - - - 0.908 - - 5'-aminolevulinate synthase 1, transcript variant X1
54. HSD17B7 ENSGALG00000037852 4750 0.908 - - - - - - - 0.908 - - hydroxysteroid 17-beta dehydrogenase 7 [Source:NCBI gene;Acc:424367]
55. CUX1_1 ENSGALG00000021636 3705 0.908 - - - - - - - 0.908 - - cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
56. ITFG2 ENSGALG00000014335 1896 0.905 - - - - - - - 0.905 - - integrin alpha FG-GAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:30879]
57. PNN ENSGALG00000010167 6417 0.904 - - - - - - - 0.904 - - pinin, desmosome associated protein [Source:HGNC Symbol;Acc:HGNC:9162]
58. STOML2 STOML2 15566 0.903 - - - - - - - 0.903 - -
59. MURC 3759 0.903 - - - - - - - 0.903 - - muscle related coiled-coil protein
60. BACE2 ENSGALG00000034932 1570 0.901 - - - - - - - 0.901 - - beta-secretase 2 [Source:HGNC Symbol;Acc:HGNC:934]
61. AGRN ENSGALG00000039193 8135 0.901 - - - - - - - 0.901 - - agrin [Source:NCBI gene;Acc:396538]
62. DOK5 ENSGALG00000007786 1732 0.9 - - - - - - - 0.900 - - docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
63. PPP2R3A ENSGALG00000034512 1091 0.9 - - - - - - - 0.900 - - protein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]
64. PDZD8 ENSGALG00000029095 1068 0.896 - - - - - - - 0.896 - - PDZ domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26974]
65. SPATA2 ENSGALG00000008026 2040 0.895 - - - - - - - 0.895 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
66. MMP15 ENSGALG00000038758 49988 0.895 - - - - - - - 0.895 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
67. USP28 ENSGALG00000006969 2645 0.893 - - - - - - - 0.893 - - ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]
68. ENSGALG00000021439 ENSGALG00000021439 628 0.891 - - - - - - - 0.891 - -
69. ATP1B3 ENSGALG00000002764 1890 0.89 - - - - - - - 0.890 - - ATPase Na+/K+ transporting subunit beta 3 [Source:NCBI gene;Acc:396549]
70. DOCK10 ENSGALG00000005030 848 0.89 - - - - - - - 0.890 - - dedicator of cytokinesis 10 [Source:HGNC Symbol;Acc:HGNC:23479]
71. G2E3 ENSGALG00000009907 1754 0.888 - - - - - - - 0.888 - - G2/M-phase specific E3 ubiquitin protein ligase [Source:NCBI gene;Acc:423305]
72. CCNL2 ENSGALG00000001551 2620 0.888 - - - - - - - 0.888 - - cyclin L2 [Source:NCBI gene;Acc:395124]
73. FGFR1 ENSGALG00000039786 4480 0.887 - - - - - - - 0.887 - - fibroblast growth factor receptor 1 [Source:NCBI gene;Acc:396516]
74. VPS13D ENSGALG00000034777 2350 0.885 - - - - - - - 0.885 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
75. LRIG3 ENSGALG00000009755 6655 0.885 - - - - - - - 0.885 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
76. TCTN2 ENSGALG00000023683 3596 0.884 - - - - - - - 0.884 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
77. GTPBP4 ENSGALG00000006703 16183 0.884 - - - - - - - 0.884 - - GTP binding protein 4 [Source:NCBI gene;Acc:420458]
78. CCDC80 ENSGALG00000015193 1387 0.883 - - - - - - - 0.883 - - coiled-coil domain containing 80 [Source:NCBI gene;Acc:395074]
79. TANK ENSGALG00000011131 3382 0.883 - - - - - - - 0.883 - - TRAF family member associated NFKB activator [Source:NCBI gene;Acc:424190]
80. ZBTB18 ENSGALG00000010705 3433 0.883 - - - - - - - 0.883 - - zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
81. ENSGALG00000018634 ENSGALG00000018634 414 0.882 - - - - - - - 0.882 - -
82. NPAT ENSGALG00000017162 1574 0.882 - - - - - - - 0.882 - - nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896]
83. RASA3 ENSGALG00000016817 2146 0.882 - - - - - - - 0.882 - - RAS p21 protein activator 3 [Source:NCBI gene;Acc:418736]
84. ACSS2 ENSGALG00000003362 3023 0.88 - - - - - - - 0.880 - - acyl-CoA synthetase short chain family member 2 [Source:HGNC Symbol;Acc:HGNC:15814]
85. NDRG3 ENSGALG00000001492 5919 0.88 - - - - - - - 0.880 - - NDRG family member 3 [Source:HGNC Symbol;Acc:HGNC:14462]
86. PRPF40A ENSGALG00000012526 7724 0.879 - - - - - - - 0.879 - - pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
87. WRB ENSGALG00000016070 5199 0.877 - - - - - - - 0.877 - - tryptophan rich basic protein [Source:NCBI gene;Acc:770415]
88. TTC38 ENSGALG00000014551 1135 0.875 - - - - - - - 0.875 - - tetratricopeptide repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:26082]
89. MAOB ENSGALG00000032836 1054 0.875 - - - - - - - 0.875 - - monoamine oxidase B
90. SELENBP1 ENSGALG00000000866 1253 0.875 - - - - - - - 0.875 - - selenium binding protein 1 [Source:NCBI gene;Acc:425664]
91. KIAA1009 KIAA1009 1261 0.874 - - - - - - - 0.874 - -
92. GLT8D1 ENSGALG00000001642 4232 0.874 - - - - - - - 0.874 - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
93. PHF2 ENSGALG00000039208 2003 0.873 - - - - - - - 0.873 - - PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
94. HAGHL ENSGALG00000021040 1568 0.873 - - - - - - - 0.873 - - hydroxyacylglutathione hydrolase-like [Source:NCBI gene;Acc:416536]
95. RNASEH1 ENSGALG00000016389 2694 0.872 - - - - - - - 0.872 - - ribonuclease H1 [Source:NCBI gene;Acc:395848]
96. TBC1D7 ENSGALG00000012731 4891 0.872 - - - - - - - 0.872 - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
97. MTUS1 ENSGALG00000013615 1040 0.871 - - - - - - - 0.871 - - microtubule associated tumor suppressor 1, transcript variant X4
98. ITFG1 ENSGALG00000004049 2934 0.871 - - - - - - - 0.871 - - integrin alpha FG-GAP repeat containing 1 [Source:NCBI gene;Acc:415742]
99. TICAM1 ENSGALG00000026850 723 0.87 - - - - - - - 0.870 - - toll like receptor adaptor molecule 1 [Source:NCBI gene;Acc:100008585]
100. ISCU ENSGALG00000004869 6852 0.87 - - - - - - - 0.870 - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]

There are 780 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA