Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LIMD1

Gene Name Gene ID Reads Annotation
LIMD1 ENSGALG00000035623 7282 LIM domains containing 1 [Source:HGNC Symbol;Acc:HGNC:6612]











Genes with expression patterns similar to LIMD1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LIMD1 ENSGALG00000035623 7282 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM domains containing 1 [Source:HGNC Symbol;Acc:HGNC:6612]
2. AHCTF1 ENSGALG00000010630 4809 2.327 - - - - - - 0.736 0.812 0.779 - AT-hook containing transcription factor 1 [Source:NCBI gene;Acc:421484]
3. LEPREL4 LEPREL4 5609 1.649 - - - - - - 0.729 0.920 - -
4. CHMP6 ENSGALG00000026428 18026 1.616 - - - - - - 0.795 0.821 - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
5. PIGK ENSGALG00000009015 7942 1.615 - - - - - - 0.723 0.892 - - phosphatidylinositol glycan anchor biosynthesis class K [Source:NCBI gene;Acc:424556]
6. DLD ENSGALG00000007931 11011 1.606 - - - - - - 0.797 0.809 - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
7. MTERFD1 MTERFD1 3640 1.599 - - - - - - 0.774 0.825 - -
8. FXR1 ENSGALG00000008864 10250 1.599 - - - - - - 0.781 0.818 - - FMR1 autosomal homolog 1 [Source:NCBI gene;Acc:424968]
9. ATG4C ENSGALG00000010985 6102 1.594 - - - - - - 0.703 0.891 - - autophagy related 4C cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:16040]
10. UBE2D1 ENSGALG00000021213 5876 1.581 - - - - - - 0.728 0.853 - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
11. NDUFB3 ENSGALG00000008239 15511 1.581 - - - - - - 0.730 0.851 - - NADH:ubiquinone oxidoreductase subunit B3 [Source:NCBI gene;Acc:424078]
12. PGAM5 ENSGALG00000002137 7700 1.574 - - - - - - 0.751 0.823 - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
13. SNAI2 ENSGALG00000030902 8201 1.543 - - - - - - 0.739 0.804 - - snail family transcriptional repressor 2
14. PPCS ENSGALG00000004882 5759 1.541 - - - - - - 0.717 0.824 - - phosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]
15. RUVBL1 ENSGALG00000005931 9379 1.535 - - - - - - 0.785 0.750 - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
16. DMB2 ENSGALG00000038393 1257 1.524 - - - - - - - 0.765 0.759 - major histocompatibility complex, class II, DM beta 2 [Source:NCBI gene;Acc:417051]
17. CTSC ENSGALG00000017239 7651 1.524 - - - - - - 0.723 0.801 - - Gallus gallus cathepsin C (CTSC), mRNA. [Source:RefSeq mRNA;Acc:NM_001321554]
18. CCDC12 ENSGALG00000005487 8190 1.514 - - - - - - 0.734 - 0.780 - coiled-coil domain containing 12 [Source:NCBI gene;Acc:420402]
19. NET1 ENSGALG00000008437 9850 1.512 - - - - - - 0.702 0.810 - - neuroepithelial cell transforming 1 [Source:NCBI gene;Acc:416693]
20. CCDC61 ENSGALG00000006714 8066 1.508 - - - - - - 0.713 0.795 - - coiled-coil domain containing 61 [Source:NCBI gene;Acc:424880]
21. BCLAF1 ENSGALG00000013935 7596 1.507 - - - - - - 0.704 0.803 - - BCL2 associated transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16863]
22. TMEM59 ENSGALG00000010746 4669 1.505 - - - - - - 0.707 0.798 - - transmembrane protein 59 [Source:NCBI gene;Acc:424656]
23. CARS2 ENSGALG00000016847 3814 1.502 - - - - - - - 0.780 0.722 - cysteinyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25695]
24. RP9 ENSGALG00000035453 1186 1.48 - - - - - - - 0.764 0.716 - retinitis pigmentosa 9 (autosomal dominant)
25. MRPL20 ENSGALG00000001542 28764 1.479 - - - - - - 0.732 0.747 - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
26. SPARC ENSGALG00000004184 36410 1.472 - - - - - - 0.747 - 0.725 - secreted protein acidic and cysteine rich [Source:NCBI gene;Acc:386571]
27. PPDPF ENSGALG00000005849 16711 1.448 - - - - - - 0.740 0.708 - - pancreatic progenitor cell differentiation and proliferation factor [Source:NCBI gene;Acc:419245]
28. WTAP ENSGALG00000011660 10811 1.445 - - - - - - 0.718 - 0.727 - WT1 associated protein [Source:HGNC Symbol;Acc:HGNC:16846]
29. UTP6 ENSGALG00000003260 4909 0.915 - - - - - - - 0.915 - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
30. KCTD6 ENSGALG00000007111 3557 0.911 - - - - - - - 0.911 - - potassium channel tetramerization domain containing 6 [Source:HGNC Symbol;Acc:HGNC:22235]
31. DERL1 ENSGALG00000033950 15074 0.903 - - - - - - 0.903 - - - derlin 1 [Source:NCBI gene;Acc:420350]
32. SPG21 ENSGALG00000007262 8050 0.901 - - - - - - - 0.901 - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
33. CAND1 4541 0.901 - - - - - - - 0.901 - - cullin associated and neddylation dissociated 1
34. CHOCT-1 CHOCT-1 3422 0.898 - - - - - - - 0.898 - -
35. WDR75 ENSGALG00000045237 9484 0.892 - - - - - - - 0.892 - - WD repeat domain 75
36. C1QBP ENSGALG00000001654 34814 0.889 - - - - - - 0.889 - - - complement C1q binding protein [Source:HGNC Symbol;Acc:HGNC:1243]
37. AP2A2 ENSGALG00000006799 13874 0.885 - - - - - - 0.885 - - - adaptor related protein complex 2 subunit alpha 2 [Source:NCBI gene;Acc:423102]
38. CLN6 ENSGALG00000007981 5656 0.885 - - - - - - - 0.885 - - CLN6, transmembrane ER protein [Source:NCBI gene;Acc:415558]
39. NDUFAF1 ENSGALG00000008587 14779 0.885 - - - - - - - 0.885 - - NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
40. NRBP1 ENSGALG00000016512 4725 0.874 - - - - - - 0.874 - - - nuclear receptor binding protein 1 [Source:NCBI gene;Acc:421985]
41. DDRGK1 ENSGALG00000016003 9098 0.873 - - - - - - - 0.873 - - DDRGK domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16110]
42. SMC4 ENSGALG00000009553 15715 0.872 - - - - - - 0.872 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
43. YOD1 ENSGALG00000037597 2989 0.868 - - - - - - 0.868 - - - YOD1 deubiquitinase [Source:NCBI gene;Acc:428266]
44. RNMTL1 RNMTL1 2889 0.866 - - - - - - - 0.866 - -
45. RALGAPB ENSGALG00000001420 5112 0.863 - - - - - - - 0.863 - - Ral GTPase activating protein non-catalytic beta subunit [Source:NCBI gene;Acc:419128]
46. ENSGALG00000003150 ENSGALG00000003150 10001 0.86 - - - - - - - 0.860 - -
47. CTNND2 ENSGALG00000013001 11217 0.859 - - - - - - 0.859 - - - catenin delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
48. ASB9 ENSGALG00000016563 2780 0.857 - - - - - - - 0.857 - - ankyrin repeat and SOCS box containing 9 [Source:NCBI gene;Acc:418625]
49. NR0B1 ENSGALG00000016287 481 0.856 - - - - - - - - 0.856 - nuclear receptor subfamily 0 group B member 1 [Source:NCBI gene;Acc:395285]
50. TSC22D2 ENSGALG00000027591 6594 0.856 - - - - - - - 0.856 - - TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
51. ACTN1 ENSGALG00000042458 10477 0.856 - - - - - - 0.856 - - - actinin, alpha 1 [Source:NCBI gene;Acc:373918]
52. ITGB1 ENSGALG00000007145 19551 0.855 - - - - - - 0.855 - - - integrin subunit beta 1 [Source:NCBI gene;Acc:374058]
53. MED24 ENSGALG00000013506 5403 0.854 - - - - - - - 0.854 - - mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
54. CNFI-A4 CNFI-A4 128 0.854 - - - - - - - - 0.854 -
55. HPCAL1 ENSGALG00000016443 6633 0.853 - - - - - - - 0.853 - - hippocalcin like 1 [Source:NCBI gene;Acc:396161]
56. CCDC59 ENSGALG00000028648 9272 0.852 - - - - - - 0.852 - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
57. MRPS23 ENSGALG00000005559 10360 0.851 - - - - - - - 0.851 - - mitochondrial ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:14509]
58. CKAP2 ENSGALG00000017025 25020 0.85 - - - - - - - 0.850 - - cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
59. MBD3 ENSGALG00000001101 37265 0.848 - - - - - - - 0.848 - - methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
60. MED9 ENSGALG00000031214 10779 0.848 - - - - - - 0.848 - - - mediator complex subunit 9 [Source:NCBI gene;Acc:416506]
61. gga-mir-6587 ENSGALG00000026386 9441 0.845 - - - - - - 0.845 - - - gga-mir-6587 [Source:miRBase;Acc:MI0022407]
62. C4H4ORF52 C4H4ORF52 8116 0.845 - - - - - - 0.845 - - -
63. POLR2B ENSGALG00000011387 4864 0.845 - - - - - - 0.845 - - - RNA polymerase II subunit B [Source:NCBI gene;Acc:422621]
64. VBP1 VBP1 14482 0.844 - - - - - - 0.844 - - -
65. ILF2 ENSGALG00000011570 23050 0.844 - - - - - - 0.844 - - - interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]
66. NCDN ENSGALG00000002408 6180 0.844 - - - - - - 0.844 - - - neurochondrin [Source:NCBI gene;Acc:419633]
67. C1H12ORF23 C1H12ORF23 13234 0.844 - - - - - - 0.844 - - -
68. R3HDM1 ENSGALG00000012246 6580 0.843 - - - - - - 0.843 - - - R3H domain containing 1 [Source:HGNC Symbol;Acc:HGNC:9757]
69. SMDT1 ENSGALG00000011897 9360 0.843 - - - - - - - 0.843 - - single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
70. NOC4L ENSGALG00000002272 9644 0.841 - - - - - - 0.841 - - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
71. GPC4 ENSGALG00000006080 56498 0.841 - - - - - - 0.841 - - - glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
72. RPS6KA RPS6KA 6745 0.841 - - - - - - 0.841 - - -
73. TRAF7 ENSGALG00000005767 4615 0.84 - - - - - - 0.840 - - - TNF receptor associated factor 7 [Source:NCBI gene;Acc:416555]
74. MRPL18 ENSGALG00000011625 7855 0.84 - - - - - - - 0.840 - - mitochondrial ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:14477]
75. ENSGALG00000009516 ENSGALG00000009516 5256 0.84 - - - - - - - 0.840 - -
76. SNRNP40 ENSGALG00000000615 32298 0.838 - - - - - - 0.838 - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
77. KDELR2 ENSGALG00000040793 29669 0.837 - - - - - - 0.837 - - - KDEL endoplasmic reticulum protein retention receptor 2 [Source:NCBI gene;Acc:771927]
78. CENPH ENSGALG00000014788 10601 0.837 - - - - - - - 0.837 - - centromere protein H [Source:NCBI gene;Acc:395316]
79. MAPK9 ENSGALG00000039099 5467 0.837 - - - - - - - 0.837 - - mitogen-activated protein kinase 9 [Source:NCBI gene;Acc:395983]
80. BID ENSGALG00000013039 12427 0.837 - - - - - - - 0.837 - - BH3 interacting domain death agonist [Source:NCBI gene;Acc:395236]
81. YWHAZ ENSGALG00000031387 84985 0.836 - - - - - - 0.836 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
82. DCPS ENSGALG00000031143 10191 0.834 - - - - - - 0.834 - - - decapping enzyme, scavenger [Source:HGNC Symbol;Acc:HGNC:29812]
83. EHD3 ENSGALG00000009086 14407 0.833 - - - - - - 0.833 - - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
84. EFTUD2 ENSGALG00000000988 17913 0.832 - - - - - - - 0.832 - - elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
85. SRRM1 ENSGALG00000001283 23820 0.832 - - - - - - 0.832 - - - serine and arginine repetitive matrix 1 [Source:NCBI gene;Acc:428216]
86. GOT1 ENSGALG00000007484 21664 0.831 - - - - - - 0.831 - - - glutamic-oxaloacetic transaminase 1 [Source:NCBI gene;Acc:396261]
87. SCO1 ENSGALG00000030475 7304 0.831 - - - - - - - 0.831 - - SCO1, cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:HGNC:10603]
88. BAZ1B ENSGALG00000029408 5921 0.831 - - - - - - - 0.831 - - bromodomain adjacent to zinc finger domain 1B [Source:HGNC Symbol;Acc:HGNC:961]
89. BRP44 BRP44 17093 0.831 - - - - - - 0.831 - - -
90. LATS2 4776 0.83 - - - - - - - 0.830 - - large tumor suppressor kinase 2
91. GABARAPL2 ENSGALG00000003208 9195 0.83 - - - - - - 0.830 - - - GABA type A receptor associated protein like 2 [Source:HGNC Symbol;Acc:HGNC:13291]
92. PEO1 PEO1 6747 0.829 - - - - - - - 0.829 - -
93. CHMP3 ENSGALG00000015805 11581 0.829 - - - - - - - 0.829 - - charged multivesicular body protein 3
94. DGCR2 ENSGALG00000005891 8405 0.828 - - - - - - 0.828 - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
95. LSM5 ENSGALG00000041625 22307 0.828 - - - - - - 0.828 - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
96. CDC42BPA ENSGALG00000009158 3926 0.828 - - - - - - - 0.828 - - CDC42 binding protein kinase alpha [Source:NCBI gene;Acc:416746]
97. COX17 ENSGALG00000014981 5646 0.828 - - - - - - 0.828 - - - COX17, cytochrome c oxidase copper chaperone [Source:NCBI gene;Acc:770190]
98. CYC CYC 8740 0.826 - - - - - - 0.826 - - -
99. GLG1 ENSGALG00000039818 6221 0.826 - - - - - - - 0.826 - - golgi glycoprotein 1 [Source:NCBI gene;Acc:396492]
100. SAR1B ENSGALG00000038753 6493 0.826 - - - - - - 0.826 - - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]

There are 818 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA