Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LIG3

Gene Name Gene ID Reads Annotation
LIG3 ENSGALG00000002288 7198 DNA ligase 3 [Source:NCBI gene;Acc:417530]











Genes with expression patterns similar to LIG3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LIG3 ENSGALG00000002288 7198 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DNA ligase 3 [Source:NCBI gene;Acc:417530]
2. PYCR1 ENSGALG00000007300 7987 1.881 - - - - - - 0.906 0.975 - - pyrroline-5-carboxylate reductase 1 [Source:NCBI gene;Acc:769203]
3. RNF144A ENSGALG00000028709 2855 1.859 - - - - - - 0.908 0.951 - - ring finger protein 144A, transcript variant X1
4. MYH15 ENSGALG00000015358 6304 1.838 - - - - - - 0.884 0.954 - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
5. FBXO33 ENSGALG00000010192 2917 1.818 - - - - - - 0.872 0.946 - - F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]
6. ADIPOR1 ENSGALG00000000094 1862 1.806 - - - - - - 0.846 0.960 - - adiponectin receptor 1 [Source:NCBI gene;Acc:421148]
7. MLLT10 ENSGALG00000007928 4022 1.768 - - - - - - 0.881 0.887 - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:HGNC Symbol;Acc:HGNC:16063]
8. CLN6 ENSGALG00000007981 5656 1.75 - - - - - - 0.907 0.843 - - CLN6, transmembrane ER protein [Source:NCBI gene;Acc:415558]
9. RDM1 ENSGALG00000000243 3388 1.739 - - - - - - 0.790 0.949 - - RAD52 motif containing 1 [Source:NCBI gene;Acc:395228]
10. ARFRP1 ENSGALG00000006101 3743 1.721 - - - - - - 0.767 0.954 - - ADP ribosylation factor related protein 1 [Source:HGNC Symbol;Acc:HGNC:662]
11. BAG4 ENSGALG00000003254 5751 1.638 - - - - - - 0.832 0.806 - - BCL2 associated athanogene 4 [Source:HGNC Symbol;Acc:HGNC:940]
12. TMEM14A ENSGALG00000019894 5279 1.624 - - 0.711 - - - 0.913 - - - transmembrane protein 14A [Source:HGNC Symbol;Acc:HGNC:21076]
13. CAB39 ENSGALG00000027262 6779 1.53 - - - - - - 0.826 0.704 - - calcium binding protein 39 [Source:HGNC Symbol;Acc:HGNC:20292]
14. RALGAPB ENSGALG00000001420 5112 1.475 - - - - - - 0.702 0.773 - - Ral GTPase activating protein non-catalytic beta subunit [Source:NCBI gene;Acc:419128]
15. KDM4A ENSGALG00000010074 7219 0.979 - - - - - - - 0.979 - - lysine demethylase 4A
16. TCEA1 ENSGALG00000015274 2706 0.975 - - - - - - - 0.975 - - transcription elongation factor A1 [Source:NCBI gene;Acc:421119]
17. UCK2 ENSGALG00000003510 2512 0.973 - - - - - - - 0.973 - - uridine-cytidine kinase 2 [Source:NCBI gene;Acc:424406]
18. TRIM24 ENSGALG00000012823 2725 0.972 - - - - - - - 0.972 - - tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
19. gga-mir-1772 ENSGALG00000025300 2892 0.97 - - - - - - - 0.970 - - gga-mir-1772 [Source:miRBase;Acc:MI0007515]
20. TMEM59 ENSGALG00000010746 4669 0.97 - - - - - - - 0.970 - - transmembrane protein 59 [Source:NCBI gene;Acc:424656]
21. BRCC3 ENSGALG00000005383 4844 0.97 - - - - - - - 0.970 - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
22. DNAJA1 ENSGALG00000023066 3820 0.97 - - - - - - - 0.970 - - DnaJ heat shock protein family (Hsp40) member A1 [Source:NCBI gene;Acc:427376]
23. DUSP14 ENSGALG00000027641 3662 0.97 - - - - - - - 0.970 - - dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]
24. LATS2 4776 0.97 - - - - - - - 0.970 - - large tumor suppressor kinase 2
25. SMARCC1 ENSGALG00000032642 4842 0.969 - - - - - - - 0.969 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
26. MTMR9 ENSGALG00000016649 2055 0.969 - - - - - - - 0.969 - - myotubularin related protein 9 [Source:NCBI gene;Acc:422033]
27. NET1 ENSGALG00000008437 9850 0.969 - - - - - - - 0.969 - - neuroepithelial cell transforming 1 [Source:NCBI gene;Acc:416693]
28. PEO1 PEO1 6747 0.969 - - - - - - - 0.969 - -
29. CHAF1A ENSGALG00000001126 6506 0.969 - - - - - - - 0.969 - - chromatin assembly factor 1 subunit A [Source:NCBI gene;Acc:770217]
30. CARS2 ENSGALG00000016847 3814 0.967 - - - - - - - 0.967 - - cysteinyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25695]
31. MTERFD1 MTERFD1 3640 0.967 - - - - - - - 0.967 - -
32. REV3L ENSGALG00000015033 1917 0.966 - - - - - - - 0.966 - - REV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]
33. AMMECR1L ENSGALG00000026728 2134 0.965 - - - - - - - 0.965 - - AMMECR1 like [Source:HGNC Symbol;Acc:HGNC:28658]
34. KHDRBS1 ENSGALG00000003272 4249 0.965 - - - - - - - 0.965 - - KH RNA binding domain containing, signal transduction associated 1 [Source:NCBI gene;Acc:374071]
35. STX18 ENSGALG00000015012 1489 0.965 - - - - - - - 0.965 - - syntaxin 18 [Source:NCBI gene;Acc:422848]
36. BTG1L ENSGALG00000004676 2293 0.965 - - - - - - - 0.965 - - protein BTG1-like
37. REXO1 ENSGALG00000001043 3179 0.964 - - - - - - - 0.964 - - RNA exonuclease 1 homolog [Source:HGNC Symbol;Acc:HGNC:24616]
38. SRP72 ENSGALG00000011403 13666 0.964 - - - - - - - 0.964 - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
39. ARRDC4 ENSGALG00000007012 1039 0.964 - - - - - - - 0.964 - - arrestin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28087]
40. MAST2 ENSGALG00000010313 2975 0.963 - - - - - - - 0.963 - - microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]
41. VGLL4 ENSGALG00000004937 3762 0.962 - - - - - - - 0.962 - - vestigial like family member 4 [Source:NCBI gene;Acc:415962]
42. DEPDC7 ENSGALG00000011681 1181 0.962 - - - - - - - 0.962 - - DEP domain containing 7 [Source:NCBI gene;Acc:421593]
43. RGS17 ENSGALG00000026034 707 0.962 - - - - - - - 0.962 - - regulator of G protein signaling 17 [Source:NCBI gene;Acc:395645]
44. CHMP6 ENSGALG00000026428 18026 0.962 - - - - - - - 0.962 - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
45. UBAC2 ENSGALG00000016880 1343 0.962 - - - - - - - 0.962 - - UBA domain containing 2 [Source:NCBI gene;Acc:418778]
46. ENSGALG00000014190 ENSGALG00000014190 5735 0.961 - - - - - - - 0.961 - -
47. PNISR ENSGALG00000015483 7711 0.961 - - - - - - - 0.961 - - PNN interacting serine and arginine rich protein [Source:NCBI gene;Acc:421796]
48. SMIM12 ENSGALG00000030261 5860 0.961 - - - - - - - 0.961 - - small integral membrane protein 12 [Source:NCBI gene;Acc:100858028]
49. CC2D2A ENSGALG00000014514 1180 0.96 - - - - - - - 0.960 - - coiled-coil and C2 domain containing 2A [Source:HGNC Symbol;Acc:HGNC:29253]
50. DCTN5 ENSGALG00000006088 3113 0.96 - - - - - - - 0.960 - - dynactin subunit 5 [Source:NCBI gene;Acc:416574]
51. CKAP2 ENSGALG00000017025 25020 0.959 - - - - - - - 0.959 - - cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
52. C7orf25 ENSGALG00000040161 694 0.959 - - - - - - - 0.959 - - chromosome 7 open reading frame 25 [Source:HGNC Symbol;Acc:HGNC:21703]
53. RNF214 ENSGALG00000036993 3729 0.959 - - - - - - - 0.959 - - ring finger protein 214 [Source:HGNC Symbol;Acc:HGNC:25335]
54. NR2F2 ENSGALG00000007000 4911 0.959 - - - - - - - 0.959 - - nuclear receptor subfamily 2 group F member 2 [Source:NCBI gene;Acc:386585]
55. PKP4 ENSGALG00000012561 3087 0.958 - - - - - - - 0.958 - - plakophilin 4 [Source:NCBI gene;Acc:424328]
56. H3-I H3-I 1498 0.958 - - - - - - - 0.958 - -
57. SMC6 ENSGALG00000016467 3321 0.958 - - - - - - - 0.958 - - Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
58. SLC25A1 ENSGALG00000041760 4744 0.958 - - - - - - - 0.958 - - solute carrier family 25 member 1, transcript variant X2
59. ZC3H3 ENSGALG00000043265 1638 0.958 - - - - - - - 0.958 - - zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:430349]
60. SNAP29 ENSGALG00000040128 3581 0.958 - - - - - - - 0.958 - - synaptosome associated protein 29 [Source:NCBI gene;Acc:416766]
61. TXNDC5 ENSGALG00000012784 4678 0.958 - - - - - - - 0.958 - - thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
62. TRMT44 ENSGALG00000015594 1490 0.957 - - - - - - - 0.957 - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
63. NEMF ENSGALG00000012263 2250 0.957 - - - - - - - 0.957 - - nuclear export mediator factor [Source:NCBI gene;Acc:428926]
64. RP9 ENSGALG00000035453 1186 0.957 - - - - - - - 0.957 - - retinitis pigmentosa 9 (autosomal dominant)
65. BCLAF1 ENSGALG00000013935 7596 0.957 - - - - - - - 0.957 - - BCL2 associated transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16863]
66. GOLGB1 ENSGALG00000041494 2376 0.957 - - - - - - - 0.957 - - golgin B1 [Source:HGNC Symbol;Acc:HGNC:4429]
67. EFHD1 ENSGALG00000001428 2831 0.957 - - - - - - - 0.957 - - EF-hand domain family member D1 [Source:NCBI gene;Acc:424741]
68. HDGFL2 ENSGALG00000027068 1300 0.957 - - - - - - - 0.957 - - HDGF like 2 [Source:NCBI gene;Acc:772302]
69. INOS INOS 313 0.956 - - - - - - - 0.956 - -
70. TFEB ENSGALG00000039878 881 0.955 - - - - - - - 0.955 - - transcription factor EB [Source:NCBI gene;Acc:419922]
71. GTDC1 ENSGALG00000012424 1446 0.955 - - - - - - - 0.955 - - glycosyltransferase like domain containing 1 [Source:NCBI gene;Acc:424304]
72. TMEM57 ENSGALG00000001067 3367 0.955 - - - - - - - 0.955 - - transmembrane protein 57 [Source:NCBI gene;Acc:419590]
73. CEP170 ENSGALG00000010733 4177 0.955 - - - - - - - 0.955 - - centrosomal protein 170 [Source:HGNC Symbol;Acc:HGNC:28920]
74. FGF18 ENSGALG00000002203 551 0.954 - - - - - - - 0.954 - - fibroblast growth factor 18 [Source:NCBI gene;Acc:395453]
75. ITGA9 ENSGALG00000029378 415 0.954 - - - - - - - 0.954 - - integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
76. IRX1 ENSGALG00000030991 1474 0.954 - - - - - - - 0.954 - - iroquois homeobox 1 [Source:NCBI gene;Acc:374185]
77. gga-mir-1306 ENSGALG00000025271 1231 0.954 - - - - - - - 0.954 - - gga-mir-1306 [Source:miRBase;Acc:MI0007057]
78. NSRP1 ENSGALG00000004186 1683 0.953 - - - - - - - 0.953 - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
79. PHLPP1 ENSGALG00000012888 398 0.953 - - - - - - - 0.953 - - PH domain and leucine rich repeat protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:20610]
80. NGEF ENSGALG00000036327 1048 0.953 - - - - - - - 0.953 - - neuronal guanine nucleotide exchange factor [Source:NCBI gene;Acc:424744]
81. ACSL1 ENSGALG00000010628 2560 0.952 - - - - - - - 0.952 - - acyl-CoA synthetase long chain family member 1 [Source:NCBI gene;Acc:422547]
82. ALG9 ENSGALG00000021174 745 0.952 - - - - - - - 0.952 - - ALG9, alpha-1,2-mannosyltransferase, transcript variant X5
83. C5orf24 ENSGALG00000006371 1573 0.952 - - - - - - - 0.952 - - chromosome 5 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:26746]
84. APOOL ENSGALG00000006978 1953 0.952 - - - - - - - 0.952 - - apolipoprotein O like [Source:NCBI gene;Acc:422271]
85. RGS9 ENSGALG00000029610 112 0.95 - - - - - - - 0.950 - - regulator of G protein signaling 9 [Source:HGNC Symbol;Acc:HGNC:10004]
86. TRPC6 ENSGALG00000029416 281 0.95 - - - - - - - 0.950 - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
87. CCDC61 ENSGALG00000006714 8066 0.95 - - - - - - - 0.950 - - coiled-coil domain containing 61 [Source:NCBI gene;Acc:424880]
88. ABCA3 ENSGALG00000037837 1606 0.95 - - - - - - - 0.950 - - ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]
89. PPCS ENSGALG00000004882 5759 0.95 - - - - - - - 0.950 - - phosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]
90. METTL22 ENSGALG00000033603 696 0.949 - - - - - - - 0.949 - - methyltransferase like 22 [Source:NCBI gene;Acc:425865]
91. FIGN ENSGALG00000011069 311 0.949 - - - - - - - 0.949 - - fidgetin, microtubule severing factor [Source:HGNC Symbol;Acc:HGNC:13285]
92. ATP8B4 ENSGALG00000002326 456 0.948 - - - - - - - 0.948 - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
93. MRPS23 ENSGALG00000005559 10360 0.948 - - - - - - - 0.948 - - mitochondrial ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:14509]
94. WASH1 WASH1 3240 0.948 - - - - - - - 0.948 - -
95. MRPL18 ENSGALG00000011625 7855 0.948 - - - - - - - 0.948 - - mitochondrial ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:14477]
96. PIGK ENSGALG00000009015 7942 0.948 - - - - - - - 0.948 - - phosphatidylinositol glycan anchor biosynthesis class K [Source:NCBI gene;Acc:424556]
97. CENPH ENSGALG00000014788 10601 0.947 - - - - - - - 0.947 - - centromere protein H [Source:NCBI gene;Acc:395316]
98. EDEM1 ENSGALG00000008320 3117 0.946 - - - - - - - 0.946 - - ER degradation enhancing alpha-mannosidase like protein 1 [Source:NCBI gene;Acc:416110]
99. TUBAL3 ENSGALG00000008444 2979 0.946 - - - - - - - 0.946 - - tubulin alpha like 3 [Source:NCBI gene;Acc:416694]
100. CHMP3 ENSGALG00000015805 11581 0.945 - - - - - - - 0.945 - - charged multivesicular body protein 3

There are 396 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA