Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LIG1

Gene Name Gene ID Reads Annotation
LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]










Genes with expression patterns similar to LIG1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 8 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
2. hnrnpub ENSDARG00000004735 16496 3.313 0.735 - - 0.912 0.810 - 0.856 - - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
3. dut ENSDARG00000106529 3120 3.201 0.770 - - - 0.850 - 0.758 - 0.823 deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
4. MKI67 ENSDARG00000091150 11038 3.177 - 0.856 - 0.786 - - 0.756 - 0.779 marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
5. ipo7 ENSDARG00000035751 7095 3.134 - - - 0.827 - 0.742 0.706 0.859 - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
6. vdac1 ENSDARG00000045132 8051 3.124 0.763 - - - 0.708 - 0.855 - 0.798 voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
7. tmpob ENSDARG00000022978 8121 3.11 0.790 - - 0.807 - - 0.770 0.743 - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
8. sox2 ENSDARG00000070913 2763 3.077 0.766 - - 0.772 - - 0.712 0.827 - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
9. nova2 ENSDARG00000017673 7685 3.076 0.713 - - 0.867 - - 0.728 - 0.768 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
10. whsc1l1 8544 3.075 0.782 - - 0.758 - 0.782 0.753 - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
11. her2 ENSDARG00000038205 3219 3.049 0.709 - - 0.762 0.877 - 0.701 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
12. dhdds ENSDARG00000039851 1135 2.691 - - - - 0.894 - - 0.959 0.838 dehydrodolichyl diphosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2236]
13. si:ch211-288g17.3 ENSDARG00000070959 2425 2.685 - - - - 0.925 - 0.912 - 0.848 si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
14. sumo3b ENSDARG00000035993 3414 2.677 - - - - - - 0.893 0.873 0.911 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
15. st8sia2 ENSDARG00000018788 2183 2.647 - - - - 0.918 - 0.784 - 0.945 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
16. wu:fj29h11 ENSDARG00000096562 863 2.621 - - - - 0.934 - 0.777 - 0.910 wu:fj29h11 [Source:ZFIN;Acc:ZDB-GENE-030131-7558]
17. bnip3la ENSDARG00000025468 3097 2.606 - - - - - 0.838 - 0.935 0.833 BCL2 interacting protein 3 like a [Source:ZFIN;Acc:ZDB-GENE-030131-2283]
18. syncripl ENSDARG00000026723 3889 2.575 - - - - 0.721 - 0.916 - 0.938 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
19. u2af2b ENSDARG00000011740 6946 2.556 - - - - - 0.888 0.775 - 0.893 U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
20. mta2 ENSDARG00000013031 2932 2.543 - - - 0.860 - - 0.879 - 0.804 metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
21. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 2.522 - - - 0.724 - - 0.874 - 0.924 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
22. crk ENSDARG00000055635, ENSDARG00000109497, ENSDARG00000115801 5105 2.518 - 0.994 - 0.776 - - 0.748 - - v-crk avian sarcoma virus CT10 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040801-148]
23. CABZ01087568.1 CABZ01087568.1 1487 2.501 - - - - 0.885 0.711 - - 0.905
24. wu:fq41a10 wu:fq41a10 7009 2.486 - - - 0.752 0.959 - 0.775 - -
25. pabpn1 ENSDARG00000045373 4876 2.482 - - - - 0.729 - 0.827 - 0.926 poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]
26. nrn1a ENSDARG00000071860 1311 2.472 - - - - 0.907 - 0.708 - 0.857 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
27. arid1b ENSDARG00000092503 1376 2.463 - - - - - 0.737 0.811 - 0.915 AT rich interactive domain 1B (SWI1-like) [Source:ZFIN;Acc:ZDB-GENE-030131-4459]
28. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.46 - - - 0.752 - - 0.860 - 0.848 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
29. kifc1 ENSDARG00000001558 6658 2.458 - - - - - 0.747 0.762 - 0.949 kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
30. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 2.454 - - - - 0.746 0.779 0.929 - - chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
31. srsf6b ENSDARG00000016783 9926 2.453 - - - 0.730 - - 0.808 - 0.915 serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
32. tle2 5014 2.448 0.789 - - 0.827 - - 0.832 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
33. CLSPN 2054 2.433 - - - 0.732 0.904 - 0.797 - - claspin
34. abcf2a ENSDARG00000038785 2065 2.431 0.769 - - - 0.895 - 0.767 - - ATP-binding cassette, sub-family F (GCN20), member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8714]
35. tuba1c ENSDARG00000055216 8384 2.43 0.728 0.994 - - - - 0.708 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
36. znf865 ENSDARG00000036698 15532 2.428 - - - 0.809 - 0.710 0.909 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
37. fzd3a ENSDARG00000021664 1958 2.425 0.742 - - 0.854 - - 0.829 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
38. tfap4 ENSDARG00000103923 2203 2.423 - - - 0.706 0.955 - 0.762 - - transcription factor AP-4 (activating enhancer binding protein 4) [Source:ZFIN;Acc:ZDB-GENE-090810-1]
39. ank2b ENSDARG00000043313 3065 2.419 0.770 - - - - - 0.757 - 0.892 ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
40. fscn1a ENSDARG00000059680 3999 2.418 - - - 0.754 - - 0.859 - 0.805 fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
41. usp7 ENSDARG00000073710 7017 2.41 - - - 0.793 - - 0.725 0.892 - ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
42. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 2.404 - - - 0.723 - - 0.751 - 0.930 protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
43. kif15 ENSDARG00000012073 1936 2.391 - - - 0.732 - - 0.742 - 0.917 kinesin family member 15 [Source:ZFIN;Acc:ZDB-GENE-050622-16]
44. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.387 0.751 - - 0.828 - - 0.808 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
45. cspg5a ENSDARG00000069981 1699 2.386 - - - 0.822 - - 0.747 - 0.817 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
46. pou3f3a ENSDARG00000042032 2835 2.384 0.758 - - 0.840 - - 0.786 - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
47. smg5 ENSDARG00000041481 1286 2.381 - - - - 0.888 0.712 0.781 - - SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]
48. puf60a ENSDARG00000032175 5618 2.377 - - - 0.815 0.707 - 0.855 - - poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
49. zswim5 ENSDARG00000055900 4243 2.377 0.704 - - - 0.801 - 0.872 - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
50. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.376 0.834 - - - - - 0.772 - 0.770 amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
51. rnaseh2a ENSDARG00000018891 1979 2.369 - - - 0.713 0.910 - 0.746 - - ribonuclease H2, subunit A [Source:ZFIN;Acc:ZDB-GENE-040426-976]
52. CR936437.1 CR936437.1 6465 2.367 0.858 - - - 0.708 - 0.801 - -
53. si:dkey-19e4.5 ENSDARG00000089886 2562 2.365 0.781 - - - - - 0.719 - 0.865 si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
54. carm1 ENSDARG00000018698 5599 2.363 - - - - - - 0.770 0.862 0.731 coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
55. abi2b ENSDARG00000014875 2259 2.357 - - - 0.732 - - 0.718 - 0.907 abl-interactor 2b [Source:ZFIN;Acc:ZDB-GENE-060519-5]
56. lsm14ab ENSDARG00000100553 3837 2.357 0.715 - - - - 0.786 0.856 - - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
57. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 2.356 0.714 - - - 0.763 - 0.879 - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
58. slbp ENSDARG00000100558 3405 2.35 - - - 0.700 0.853 - - - 0.797 stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
59. rheb ENSDARG00000090213 1432 2.347 0.756 - - - - - 0.737 - 0.854 Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
60. aspm ENSDARG00000103754 5708 2.343 - - - 0.826 0.734 - 0.783 - - abnormal spindle microtubule assembly [Source:ZFIN;Acc:ZDB-GENE-050208-620]
61. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 2.338 - - - - 0.739 - 0.755 - 0.844 heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
62. smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 2.332 - - - 0.721 0.789 - - - 0.822 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]
63. TUBA1A ENSDARG00000001889 25294 2.322 - - - 0.799 - - 0.751 0.772 - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
64. tubb5 ENSDARG00000037997 18691 2.319 - - - 0.840 - - 0.748 0.731 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
65. abcf1 ENSDARG00000031795 8635 2.318 - - - 0.760 - - 0.798 - 0.760 ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
66. ANKRD11 ENSDARG00000051886 10024 2.309 0.722 - - - - 0.784 0.803 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
67. smarcd1 ENSDARG00000019004 6028 2.309 - - - 0.802 - 0.708 0.799 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
68. pomp ENSDARG00000032296 4439 2.308 - - - - 0.722 - 0.781 - 0.805 proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
69. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 2.305 - 0.824 - 0.714 - - 0.767 - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
70. CABZ01111990.1 CABZ01111990.1 4374 2.295 0.728 - - - - - 0.738 - 0.829
71. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.294 0.749 - - 0.732 - - 0.813 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
72. mdkb ENSDARG00000020708 5393 2.29 - - - 0.727 - - 0.801 - 0.762 midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
73. rrm1 ENSDARG00000014017 7296 2.27 0.752 - - 0.817 - - - - 0.701 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
74. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.26 0.716 - - 0.828 - - 0.716 - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
75. uba1 ENSDARG00000037559 11579 2.258 0.750 - - - - 0.711 0.797 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
76. plp1a ENSDARG00000103732 3544 2.255 - - - 0.775 - - 0.714 - 0.766 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
77. pfn2l ENSDARG00000012682 21690 2.252 0.705 - - 0.791 - - 0.756 - - profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
78. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 2.25 0.769 - - - 0.753 - 0.728 - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
79. slc18a3a ENSDARG00000006356 1285 2.242 0.723 - - - 0.813 - 0.706 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
80. neurog1 ENSDARG00000056130 3924 2.235 0.721 - - - - - 0.707 - 0.807 neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
81. ephb3a ENSDARG00000031548 1872 2.225 0.703 - - - - - 0.733 - 0.789 eph receptor B3a [Source:ZFIN;Acc:ZDB-GENE-990415-60]
82. MDC1 ENSDARG00000086764 1851 2.201 0.716 - - 0.746 - - 0.739 - - mediator of DNA damage checkpoint 1 [Source:ZFIN;Acc:ZDB-GENE-060810-185]
83. dla ENSDARG00000010791 9281 2.186 0.771 - - - - - 0.712 0.703 - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
84. AGO1 ENSDARG00000092644 4521 2.181 0.721 - - - 0.731 - 0.729 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
85. pebp1 ENSDARG00000042069 6651 2.177 0.719 - - - - - 0.709 - 0.749 phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
86. gnao1a ENSDARG00000016676 8184 2.158 0.704 - - - - - 0.725 - 0.729 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
87. ptena ENSDARG00000071018, ENSDARG00000114986, ENSDARG00000115966 6610 2.149 - - - 0.735 - 0.714 0.700 - - phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]
88. lemd3 ENSDARG00000015824 2868 2.133 0.707 - - - - 0.714 0.712 - - LEM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-490]
89. utp23 ENSDARG00000105012 1346 1.903 - 0.994 - - 0.909 - - - - UTP23, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-353]
90. sdad1 ENSDARG00000105117 2819 1.869 - 0.995 - - - - - - 0.874 SDA1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-021213-1]
91. cped1 ENSDARG00000045747 1024 1.858 - 0.994 - - 0.864 - - - - cadherin-like and PC-esterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041210-247]
92. mrpl13 ENSDARG00000056903 2768 1.84 - 0.995 - - - - - - 0.845 mitochondrial ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-050522-167]
93. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.837 - 0.983 - - - - 0.854 - - EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
94. ptges3b_1 ENSDARG00000089626 1670 1.827 - - - - - - - 0.927 0.900 prostaglandin E synthase 3b (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040625-144]
95. akirin1 ENSDARG00000039969, ENSDARG00000116670 2533 1.824 - 0.996 - - - - 0.828 - - akirin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2178]
96. ehmt1b ENSDARG00000026634, ENSDARG00000116921 1261 1.822 - - - - 0.916 - - - 0.906 euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
97. LPL_1 LPL_1 1150 1.818 - - - - 0.920 - - - 0.898
98. usp49 ENSDARG00000000229 706 1.814 - - - - 0.917 - - - 0.897 ubiquitin specific peptidase 49 [Source:ZFIN;Acc:ZDB-GENE-050208-484]
99. rbb4 rbb4 15541 1.812 - 0.993 - - - - 0.819 - -
100. cwc22 ENSDARG00000014008 2385 1.797 - - - - - - - 0.936 0.861 CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]

There are 2169 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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