Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LHX6

Gene Name Gene ID Reads Annotation
LHX6 ENSGALG00000001347 7 LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]











Genes with expression patterns similar to LHX6

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LHX6 ENSGALG00000001347 7 1 - - 1.000 - - - - - - - LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
2. ANKRD42 8 1 - - 1.000 - - - - - - - ankyrin repeat domain 42
3. SPTSSBL ENSGALG00000026131 70 1 - - 1.000 - - - - - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
4. ENSGALG00000000407 ENSGALG00000000407 32 0.999 - - 0.999 - - - - - - -
5. IKBIP ENSGALG00000026284 31 0.998 - - 0.998 - - - - - - - IKBKB interacting protein [Source:HGNC Symbol;Acc:HGNC:26430]
6. PLAG1 ENSGALG00000015407 17 0.998 - - 0.998 - - - - - - - PLAG1 zinc finger [Source:NCBI gene;Acc:429484]
7. LRRC56 ENSGALG00000041955 16 0.997 - - 0.997 - - - - - - - leucine rich repeat containing 56 [Source:HGNC Symbol;Acc:HGNC:25430]
8. ENSGALG00000026975 ENSGALG00000026975 8 0.997 - - 0.997 - - - - - - -
9. PSMD4 ENSGALG00000028505 16 0.996 - - 0.996 - - - - - - - proteasome 26S subunit, non-ATPase 4 [Source:NCBI gene;Acc:100216364]
10. HOXA9 ENSGALG00000028983 9298 0.995 - - 0.995 - - - - - - - homeobox A9 [Source:NCBI gene;Acc:396096]
11. SATB2 ENSGALG00000008135 347 0.991 - - 0.991 - - - - - - - SATB homeobox 2 [Source:NCBI gene;Acc:424063]
12. DNAH7 ENSGALG00000007841 32 0.991 - - 0.991 - - - - - - - dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
13. YDJC ENSGALG00000029198 14 0.99 - - 0.990 - - - - - - - YdjC chitooligosaccharide deacetylase homolog [Source:HGNC Symbol;Acc:HGNC:27158]
14. TMEM230 ENSGALG00000036876 55 0.986 - - 0.986 - - - - - - - transmembrane protein 230 [Source:NCBI gene;Acc:419518]
15. FNDC7 ENSGALG00000001983 24 0.977 - - 0.977 - - - - - - - fibronectin type III domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26668]
16. ENSGALG00000029120 ENSGALG00000029120 73 0.977 - - 0.977 - - - - - - -
17. MMP9 ENSGALG00000006992 78 0.977 - - 0.977 - - - - - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
18. ENSGALG00000006278 ENSGALG00000006278 202 0.97 - - 0.970 - - - - - - -
19. ENSGALG00000021882 ENSGALG00000021882 63 0.969 - - 0.969 - - - - - - -
20. PRKCZ ENSGALG00000001270 12 0.967 - - 0.967 - - - - - - - protein kinase C zeta [Source:HGNC Symbol;Acc:HGNC:9412]
21. CYP3A4 ENSGALG00000004436 75 0.963 - - 0.963 - - - - - - - Gallus gallus cytochrome P450 family 3 subfamily A member 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001329508]
22. SLCO4C1 ENSGALG00000026768 30 0.96 - - 0.960 - - - - - - - solute carrier organic anion transporter family member 4C1, transcript variant X4
23. XYLT1 ENSGALG00000006757 169 0.959 - - 0.959 - - - - - - - xylosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15516]
24. SAMSN1 ENSGALG00000040926 88 0.958 - - 0.958 - - - - - - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
25. ZBTB21 ENSGALG00000016147 13 0.958 - - 0.958 - - - - - - - zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]
26. TSPAN18 ENSGALG00000036901 14 0.958 - - 0.958 - - - - - - - tetraspanin 18 [Source:NCBI gene;Acc:395586]
27. B3GNTL1 ENSGALG00000001433 22 0.957 - - 0.957 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 [Source:HGNC Symbol;Acc:HGNC:21727]
28. SUSD4 ENSGALG00000009388 48 0.948 - - 0.948 - - - - - - - sushi domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25470]
29. DSG2 ENSGALG00000015142 67 0.948 - - 0.948 - - - - - - - desmoglein 2 [Source:HGNC Symbol;Acc:HGNC:3049]
30. LCOR ENSGALG00000028512 30 0.946 - - 0.946 - - - - - - - ligand dependent nuclear receptor corepressor, transcript variant X16
31. REEP2 ENSGALG00000017365 338 0.946 - - 0.946 - - - - - - - receptor accessory protein 2 [Source:HGNC Symbol;Acc:HGNC:17975]
32. C1orf131 C1orf131 141 0.935 - - 0.935 - - - - - - -
33. MTMR10 85 0.928 - - 0.928 - - - - - - - myotubularin related protein 10
34. PLEKHJ1 ENSGALG00000000835 55 0.926 - - 0.926 - - - - - - - pleckstrin homology domain containing J1 [Source:NCBI gene;Acc:428324]
35. LOC769139 ENSGALG00000026754 753 0.924 - - 0.924 - - - - - - - feather keratin 1-like, transcript variant X2
36. MDM2 ENSGALG00000009942 397 0.924 - - 0.924 - - - - - - - MDM2 proto-oncogene [Source:NCBI gene;Acc:395609]
37. UBE3C ENSGALG00000006461 57 0.921 - - 0.921 - - - - - - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
38. NSL1/DC31 NSL1/DC31 43 0.919 - - 0.919 - - - - - - -
39. ITGB2 ENSGALG00000007511 46 0.919 - - 0.919 - - - - - - - integrin subunit beta 2 [Source:NCBI gene;Acc:396181]
40. AFTPH ENSGALG00000008828 21 0.917 - - 0.917 - - - - - - - aftiphilin [Source:HGNC Symbol;Acc:HGNC:25951]
41. C3ORF64 C3ORF64 49 0.915 - - 0.915 - - - - - - -
42. DINB1 DINB1 113 0.913 - - 0.913 - - - - - - -
43. WDR48 ENSGALG00000006052 3575 0.91 - - 0.910 - - - - - - - WD repeat domain 48 [Source:NCBI gene;Acc:420427]
44. HNF4G ENSGALG00000042621 484 0.907 - - 0.907 - - - - - - - hepatocyte nuclear factor 4 gamma [Source:HGNC Symbol;Acc:HGNC:5026]
45. STK38 ENSGALG00000000523 44 0.905 - - 0.905 - - - - - - - serine/threonine kinase 38 [Source:HGNC Symbol;Acc:HGNC:17847]
46. KIAA1549 ENSGALG00000012796 60 0.902 - - 0.902 - - - - - - - KIAA1549 [Source:HGNC Symbol;Acc:HGNC:22219]
47. gga-mir-2954 ENSGALG00000026107 462 0.902 - - 0.902 - - - - - - - gga-mir-2954 [Source:miRBase;Acc:MI0013634]
48. PPARGC1A ENSGALG00000042851 364 0.901 - - 0.901 - - - - - - - PPARG coactivator 1 alpha [Source:NCBI gene;Acc:422815]
49. PDCD6IP ENSGALG00000033500 580 0.901 - - 0.901 - - - - - - - programmed cell death 6 interacting protein [Source:NCBI gene;Acc:420725]
50. MYT1L ENSGALG00000016384 147 0.9 - - 0.900 - - - - - - - myelin transcription factor 1 like [Source:HGNC Symbol;Acc:HGNC:7623]
51. KIF9 ENSGALG00000005517 70 0.9 - - 0.900 - - - - - - - kinesin family member 9 [Source:HGNC Symbol;Acc:HGNC:16666]
52. CNTF ENSGALG00000026207 47 0.898 - - 0.898 - - - - - - - ciliary neurotrophic factor [Source:NCBI gene;Acc:396488]
53. LIN54 ENSGALG00000011133 75 0.896 - - 0.896 - - - - - - - lin-54 DREAM MuvB core complex component [Source:HGNC Symbol;Acc:HGNC:25397]
54. TMEM150C ENSGALG00000011175 218 0.894 - - 0.894 - - - - - - - transmembrane protein 150C [Source:HGNC Symbol;Acc:HGNC:37263]
55. IQGAP1 ENSGALG00000030162 1047 0.886 - - 0.886 - - - - - - - IQ motif containing GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:6110]
56. BTBD6 ENSGALG00000033813 163 0.886 - - 0.886 - - - - - - - BTB domain containing 6 [Source:HGNC Symbol;Acc:HGNC:19897]
57. SUPT20H ENSGALG00000017047 59 0.881 - - 0.881 - - - - - - - SPT20 homolog, SAGA complex component [Source:NCBI gene;Acc:418896]
58. DAB2IP ENSGALG00000001419 100 0.88 - - 0.880 - - - - - - - DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
59. IMPG2 ENSGALG00000015322 74 0.88 - - 0.880 - - - - - - - interphotoreceptor matrix proteoglycan 2 [Source:NCBI gene;Acc:418393]
60. TMEM159 ENSGALG00000027173 67 0.88 - - 0.880 - - - - - - - transmembrane protein 159 [Source:HGNC Symbol;Acc:HGNC:30136]
61. DNAAF1 ENSGALG00000003258 115 0.878 - - 0.878 - - - - - - - dynein axonemal assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:30539]
62. MGST2 ENSGALG00000009803 427 0.877 - - 0.877 - - - - - - - microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:HGNC:7063]
63. SPSB3 ENSGALG00000002285 1329 0.876 - - 0.876 - - - - - - - splA/ryanodine receptor domain and SOCS box containing 3 [Source:HGNC Symbol;Acc:HGNC:30629]
64. ROGDI ENSGALG00000001841 313 0.875 - - 0.875 - - - - - - - rogdi homolog [Source:HGNC Symbol;Acc:HGNC:29478]
65. ABHD14A 174 0.875 - - 0.875 - - - - - - - abhydrolase domain containing 14A
66. LOXL1 ENSGALG00000028247 672 0.873 - - 0.873 - - - - - - - lysyl oxidase like 1
67. RPS6KA6 ENSGALG00000007097 94 0.872 - - 0.872 - - - - - - - ribosomal protein S6 kinase A6 [Source:HGNC Symbol;Acc:HGNC:10435]
68. TPST2 ENSGALG00000005626 945 0.871 - - 0.871 - - - - - - - tyrosylprotein sulfotransferase 2 [Source:NCBI gene;Acc:416910]
69. SBF2 ENSGALG00000005716 134 0.866 - - 0.866 - - - - - - - SET binding factor 2 [Source:NCBI gene;Acc:423043]
70. HTR2C ENSGALG00000005853 90 0.866 - - 0.866 - - - - - - - Gallus gallus 5-hydroxytryptamine receptor 2C (HTR2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001318421]
71. NMRK1 ENSGALG00000015156 88 0.863 - - 0.863 - - - - - - - nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:HGNC:26057]
72. FAT3 ENSGALG00000017229 141 0.861 - - 0.861 - - - - - - - FAT atypical cadherin 3 [Source:NCBI gene;Acc:395167]
73. FAM105B 56 0.861 - - 0.861 - - - - - - - family with sequence similarity 105, member B, transcript variant X18
74. ITPKB ENSGALG00000009068 324 0.859 - - 0.859 - - - - - - - inositol-trisphosphate 3-kinase B [Source:HGNC Symbol;Acc:HGNC:6179]
75. TRMT44 ENSGALG00000015594 1490 0.857 - - 0.857 - - - - - - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
76. PDK1 ENSGALG00000013235 238 0.856 - - 0.856 - - - - - - - pyruvate dehydrogenase kinase 1 [Source:NCBI gene;Acc:425972]
77. NPY ENSGALG00000010983 441 0.855 - - 0.855 - - - - - - - neuropeptide Y [Source:NCBI gene;Acc:396464]
78. MAP9 ENSGALG00000020253 785 0.855 - - 0.855 - - - - - - - microtubule associated protein 9, transcript variant X7
79. RHOV ENSGALG00000028047 75 0.853 - - 0.853 - - - - - - - ras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]
80. CLIC3 ENSGALG00000038789 233 0.852 - - 0.852 - - - - - - - chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
81. MOB1B ENSGALG00000011573 567 0.845 - - 0.845 - - - - - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
82. CEP128 ENSGALG00000010562 133 0.842 - - 0.842 - - - - - - - centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]
83. SLC25A46 ENSGALG00000000253 226 0.839 - - 0.839 - - - - - - - solute carrier family 25 member 46 [Source:NCBI gene;Acc:415610]
84. LRP1B ENSGALG00000012407 125 0.836 - - 0.836 - - - - - - - LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
85. STK24 ENSGALG00000016885 442 0.834 - - 0.834 - - - - - - - serine/threonine kinase 24 [Source:NCBI gene;Acc:418780]
86. NAV3 ENSGALG00000010311 133 0.834 - - 0.834 - - - - - - - neuron navigator 3 [Source:NCBI gene;Acc:417869]
87. SLC9A7 ENSGALG00000016734 146 0.832 - - 0.832 - - - - - - - solute carrier family 9 member A7 [Source:HGNC Symbol;Acc:HGNC:17123]
88. FLRT3 ENSGALG00000008716 593 0.83 - - 0.830 - - - - - - - fibronectin leucine rich transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:3762]
89. UBXN6 ENSGALG00000001146 122 0.828 - - 0.828 - - - - - - - UBX domain protein 6 [Source:HGNC Symbol;Acc:HGNC:14928]
90. YIPF1 5945 0.828 - - 0.828 - - - - - - - Yip1 domain family member 1, transcript variant 4
91. SIRT1 ENSGALG00000002761 9028 0.825 - - 0.825 - - - - - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
92. IL4RA IL4RA 1237 0.815 - - 0.815 - - - - - - -
93. ECHDC3 ENSGALG00000006690 1299 0.814 - - 0.814 - - - - - - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
94. DUS4L ENSGALG00000023661 29 0.814 - - 0.814 - - - - - - - dihydrouridine synthase 4 like [Source:HGNC Symbol;Acc:HGNC:21517]
95. KRT14 ENSGALG00000003690 682 0.81 - - 0.810 - - - - - - - keratin 14 [Source:NCBI gene;Acc:408039]
96. CHM ENSGALG00000006906 4953 0.806 - - 0.806 - - - - - - - CHM, Rab escort protein 1 [Source:NCBI gene;Acc:422266]
97. SYDE2 ENSGALG00000038776 192 0.804 - - 0.804 - - - - - - - synapse defective Rho GTPase homolog 2 [Source:HGNC Symbol;Acc:HGNC:25841]
98. RICTOR ENSGALG00000003775 247 0.803 - - 0.803 - - - - - - - RPTOR independent companion of MTOR complex 2 [Source:HGNC Symbol;Acc:HGNC:28611]
99. RNF170 ENSGALG00000015386 296 0.801 - - 0.801 - - - - - - - ring finger protein 170 [Source:NCBI gene;Acc:427296]
100. ROPN1L ENSGALG00000013006 97 0.8 - - 0.800 - - - - - - - rhophilin associated tail protein 1 like [Source:HGNC Symbol;Acc:HGNC:24060]

There are 80 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA