Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LDLR

Gene Name Gene ID Reads Annotation
LDLR LDLR 838










Genes with expression patterns similar to LDLR

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. LDLR LDLR 838 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. SVIL SVIL 2589 2.38 0.760 - - - - 0.721 - - 0.899
3. tnfaip8l2b ENSDARG00000046148 1133 1.907 - 0.988 - - - - - - 0.919 tumor necrosis factor, alpha-induced protein 8-like 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1359]
4. fmr1 ENSDARG00000037433 5132 1.897 - 0.984 - - - - - - 0.913 fragile X mental retardation 1 [Source:ZFIN;Acc:ZDB-GENE-020731-6]
5. dhrs3b ENSDARG00000044803 2931 1.844 0.865 - - - - - - - 0.979 dehydrogenase/reductase (SDR family) member 3b [Source:ZFIN;Acc:ZDB-GENE-041010-172]
6. SLC12A6 SLC12A6 883 1.831 - 0.991 - - - - - - 0.840
7. carhsp1 ENSDARG00000053129 2100 1.826 0.837 0.989 - - - - - - - calcium regulated heat stable protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1479]
8. amot ENSDARG00000078335 1757 1.824 - 0.993 - - - - 0.831 - - angiomotin [Source:ZFIN;Acc:ZDB-GENE-030131-7487]
9. mpv17 ENSDARG00000032431 1225 1.806 0.827 - - - - - - - 0.979 MpV17 mitochondrial inner membrane protein [Source:ZFIN;Acc:ZDB-GENE-040426-1168]
10. zgc:194839 ENSDARG00000078550 4003 1.79 - 0.825 - - - - - - 0.965 zgc:194839 [Source:ZFIN;Acc:ZDB-GENE-081022-153]
11. C19H1orf85 C19H1orf85 1587 1.789 0.796 0.993 - - - - - - -
12. traf4b ENSDARG00000038964 346 1.785 - 0.994 - - - - 0.791 - - tnf receptor-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-040305-2]
13. atp2a3 ENSDARG00000060978 1408 1.784 0.831 - - - - - - - 0.953 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 [Source:ZFIN;Acc:ZDB-GENE-060531-103]
14. sh3yl1 ENSDARG00000074393 815 1.769 0.798 - - - - - - - 0.971 SH3 and SYLF domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040128-16]
15. mvp ENSDARG00000021242 6875 1.768 0.865 - - - - - - - 0.903 major vault protein [Source:ZFIN;Acc:ZDB-GENE-030826-33]
16. mir205 2147 1.753 0.768 - - - - - - - 0.985 microRNA 205
17. CU655970.1 CU655970.1 2123 1.753 0.768 0.985 - - - - - - -
18. ak3 ENSDARG00000058226 3160 1.747 - 0.978 - - - - 0.769 - - adenylate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2142]
19. bcl6a ENSDARG00000070864, ENSDARG00000111395, ENSDARG00000112502, ENSDARG00000116260 657 1.733 0.738 0.995 - - - - - - - B-cell CLL/lymphoma 6a (zinc finger protein 51) [Source:ZFIN;Acc:ZDB-GENE-040426-1696]
20. gfer ENSDARG00000070061 1119 1.732 0.742 0.990 - - - - - - - growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-186]
21. ahr2 ENSDARG00000021833 762 1.729 - 0.994 - - - 0.735 - - - aryl hydrocarbon receptor 2 [Source:ZFIN;Acc:ZDB-GENE-990714-16]
22. zgc:101569 ENSDARG00000038876 1525 1.726 - 0.991 - - - - 0.735 - - zgc:101569 [Source:ZFIN;Acc:ZDB-GENE-041010-72]
23. slc3a2a ENSDARG00000036427, ENSDARG00000112231 2967 1.726 - 0.983 - - - - 0.743 - - solute carrier family 3 (amino acid transporter heavy chain), member 2a [Source:ZFIN;Acc:ZDB-GENE-000831-3]
24. RNF5 ENSDARG00000075606 1730 1.722 0.738 - - - - - - - 0.984 ring finger protein 5 [Source:HGNC Symbol;Acc:HGNC:10068]
25. HIP1R HIP1R 490 1.721 - - - - 0.735 - - - 0.986
26. hbegfa ENSDARG00000075121 1865 1.72 0.782 - - - - - - - 0.938 heparin-binding EGF-like growth factor a [Source:ZFIN;Acc:ZDB-GENE-080204-119]
27. gata5 ENSDARG00000017821 1146 1.72 - 0.973 - - - - 0.747 - - GATA binding protein 5 [Source:ZFIN;Acc:ZDB-GENE-980526-340]
28. helz ENSDARG00000030560 3259 1.719 - 0.989 - - - - - - 0.730 helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
29. dlg5a ENSDARG00000074059 1834 1.704 0.737 - - - - - - - 0.967 discs, large homolog 5a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-3149]
30. SRGAP3 ENSDARG00000060309 5353 1.702 0.742 0.960 - - - - - - - SLIT-ROBO Rho GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-060524-4]
31. lamtor5 ENSDARG00000090194, ENSDARG00000115255 2539 1.693 0.755 - - - - - - - 0.938 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:ZFIN;Acc:ZDB-GENE-110411-193]
32. gna12a ENSDARG00000025826 1769 1.686 - - - - - 0.732 - - 0.954 guanine nucleotide binding protein (G protein) alpha 12a [Source:ZFIN;Acc:ZDB-GENE-050221-1]
33. id3 ENSDARG00000054823 3484 1.683 0.783 - - - - - - - 0.900 inhibitor of DNA binding 3 [Source:ZFIN;Acc:ZDB-GENE-020515-1]
34. si:dkey-52k20.13 si:dkey-52k20.13 428 1.668 0.848 - - - - 0.820 - - -
35. CPAMD8 ENSDARG00000056530 3481 1.66 0.733 - - - - - - - 0.927 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-050208-428]
36. camk2n1a ENSDARG00000025855 1467 1.645 0.802 - - - - - 0.843 - - calcium/calmodulin-dependent protein kinase II inhibitor 1a [Source:ZFIN;Acc:ZDB-GENE-050522-319]
37. fam89a ENSDARG00000079979 4375 1.631 0.862 - - - - - - - 0.769 family with sequence similarity 89, member A [Source:ZFIN;Acc:ZDB-GENE-111019-1]
38. nme3 ENSDARG00000100990 3889 1.63 0.779 - - - - - - - 0.851 NME/NM23 nucleoside diphosphate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-000210-34]
39. aldh4a1 ENSDARG00000038207 4639 1.63 - 0.880 - - - - 0.750 - - aldehyde dehydrogenase 4 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1179]
40. ftr82 ENSDARG00000055647 3302 1.629 0.717 0.912 - - - - - - - finTRIM family, member 82 [Source:ZFIN;Acc:ZDB-GENE-030219-207]
41. ugt1ab 545 1.623 - 0.909 - - - - 0.714 - - UDP glucuronosyltransferase 1 family a, b
42. krt17 ENSDARG00000094041 7683 1.596 0.824 - - - - - - - 0.772 keratin 17 [Source:ZFIN;Acc:ZDB-GENE-060503-86]
43. otud5a ENSDARG00000059006 2073 1.59 0.738 - - - - 0.852 - - - OTU deubiquitinase 5a [Source:ZFIN;Acc:ZDB-GENE-030616-61]
44. zgc:92313 ENSDARG00000040513 790 1.587 0.788 - - - - 0.799 - - - zgc:92313 [Source:ZFIN;Acc:ZDB-GENE-040718-339]
45. MPC2 ENSDARG00000024478 4194 1.566 0.853 - - - - - 0.713 - - mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
46. col12a1a ENSDARG00000078322 1833 1.549 - - - - - 0.731 0.818 - - collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
47. zgc:101663 ENSDARG00000037852 830 1.53 0.783 - - - - 0.747 - - - zgc:101663 [Source:ZFIN;Acc:ZDB-GENE-041114-149]
48. frem2b ENSDARG00000102626 1416 1.529 - - - - - 0.702 - - 0.827 Fras1 related extracellular matrix protein 2b [Source:ZFIN;Acc:ZDB-GENE-081119-4]
49. miox ENSDARG00000002764 588 1.529 0.800 - - - - 0.729 - - - myo-inositol oxygenase [Source:ZFIN;Acc:ZDB-GENE-050913-113]
50. abat ENSDARG00000006031 2143 1.52 0.806 - - - - - 0.714 - - 4-aminobutyrate aminotransferase [Source:ZFIN;Acc:ZDB-GENE-031006-4]
51. sec23b ENSDARG00000019360 6210 1.516 0.772 0.744 - - - - - - - Sec23 homolog B, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-030131-5479]
52. pvrl3l pvrl3l 943 1.515 0.811 - - 0.704 - - - - -
53. lims1 ENSDARG00000026985 2072 1.508 - - - - - 0.709 - - 0.799 LIM and senescent cell antigen-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-050522-236]
54. golga3 ENSDARG00000062511 588 1.499 - - - 0.758 - 0.741 - - - golgin A3 [Source:ZFIN;Acc:ZDB-GENE-060526-252]
55. zgc:158309 zgc:158309 2696 1.497 - - - - - 0.732 0.765 - -
56. rhov ENSDARG00000070434 808 1.496 0.788 - - - - 0.708 - - - ras homolog family member V [Source:ZFIN;Acc:ZDB-GENE-031002-10]
57. orc1 ENSDARG00000039217, ENSDARG00000115400 795 1.486 0.750 - - - - - - 0.736 - origin recognition complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6960]
58. cdh6 ENSDARG00000014522 5492 1.484 - - - - - 0.751 0.733 - - cadherin 6 [Source:ZFIN;Acc:ZDB-GENE-050320-92]
59. pycr1 pycr1 1258 1.482 0.773 - - - - - 0.709 - -
60. coro1ca ENSDARG00000035598 9278 1.465 0.709 - - - - - - - 0.756 coronin, actin binding protein, 1Ca [Source:ZFIN;Acc:ZDB-GENE-030114-6]
61. rnf170 ENSDARG00000104069 838 1.46 0.756 - - - - 0.704 - - - ring finger protein 170 [Source:ZFIN;Acc:ZDB-GENE-040426-2572]
62. rnf11a ENSDARG00000010442 592 1.45 0.740 - - - - - 0.710 - - ring finger protein 11a [Source:ZFIN;Acc:ZDB-GENE-040426-1277]
63. si:dkey-183n20.15 ENSDARG00000094265 190 1.444 - - - - - 0.707 0.737 - - si:dkey-183n20.15 [Source:ZFIN;Acc:ZDB-GENE-041001-160]
64. itgb1b.2 ENSDARG00000022689 523 1.443 - - - - - 0.727 0.716 - - integrin, beta 1b.2 [Source:ZFIN;Acc:ZDB-GENE-040426-2598]
65. sh3d19 ENSDARG00000088202, ENSDARG00000114126, ENSDARG00000117115 340 1.433 - - - - - - 0.733 0.700 - SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
66. igf2r ENSDARG00000006094 1578 1.432 0.729 - - - - 0.703 - - - insulin-like growth factor 2 receptor [Source:ZFIN;Acc:ZDB-GENE-041014-300]
67. pon2 ENSDARG00000016856 1382 0.997 - 0.997 - - - - - - - paraoxonase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7116]
68. plrg1 ENSDARG00000037283, ENSDARG00000110921 1552 0.997 - 0.997 - - - - - - - pleiotropic regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2787]
69. mapk12a ENSDARG00000042021 1573 0.996 - 0.996 - - - - - - - mitogen-activated protein kinase 12a [Source:ZFIN;Acc:ZDB-GENE-990415-257]
70. zgc:171759_4 ENSDARG00000100259, ENSDARG00000109737, ENSDARG00000111964, ENSDARG00000114195, ENSDARG00000115938 327 0.996 - 0.996 - - - - - - - zgc:171759 [Source:ZFIN;Acc:ZDB-GENE-071004-32]
71. tbc1d23 ENSDARG00000044357, ENSDARG00000109696 6272 0.996 - 0.996 - - - - - - - TBC1 domain family, member 23 [Source:ZFIN;Acc:ZDB-GENE-040426-1253]
72. CABZ01057907.1 CABZ01057907.1 1140 0.995 - 0.995 - - - - - - -
73. CR293507.1 ENSDARG00000112572 3198 0.995 - 0.995 - - - - - - -
74. si:ch211-133l11.10 ENSDARG00000005626 381 0.995 - 0.995 - - - - - - - si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
75. si:ch211-129c21.1 ENSDARG00000024775 371 0.995 - 0.995 - - - - - - - si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
76. cdc14b ENSDARG00000021483 4958 0.995 - 0.995 - - - - - - - cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
77. tex2 ENSDARG00000078186 2467 0.995 - 0.995 - - - - - - - testis expressed 2 [Source:ZFIN;Acc:ZDB-GENE-070615-7]
78. STARD7 ENSDARG00000074858 889 0.995 - 0.995 - - - - - - - StAR-related lipid transfer (START) domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-2310]
79. HEATR6 ENSDARG00000073686 241 0.995 - 0.995 - - - - - - - HEAT repeat containing 6 [Source:ZFIN;Acc:ZDB-GENE-080204-118]
80. PDPR ENSDARG00000103288 711 0.995 - 0.995 - - - - - - - pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
81. snx16 ENSDARG00000046072 931 0.995 - 0.995 - - - - - - - sorting nexin 16 [Source:ZFIN;Acc:ZDB-GENE-040426-1832]
82. marveld2a ENSDARG00000025076 917 0.995 - 0.995 - - - - - - - MARVEL domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-050411-59]
83. lpar2b ENSDARG00000042561 1086 0.995 - 0.995 - - - - - - - lysophosphatidic acid receptor 2b [Source:ZFIN;Acc:ZDB-GENE-051120-99]
84. uck2a ENSDARG00000006074 1554 0.995 - 0.995 - - - - - - - uridine-cytidine kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7158]
85. lemd3 ENSDARG00000015824 2868 0.995 - 0.995 - - - - - - - LEM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-490]
86. nucb2b ENSDARG00000036291 911 0.995 - 0.995 - - - - - - - nucleobindin 2b [Source:ZFIN;Acc:ZDB-GENE-030131-4775]
87. ITFG1 ENSDARG00000075584, ENSDARG00000110264 615 0.995 - 0.995 - - - - - - - integrin alpha FG-GAP repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-121003-3]
88. zgc:154006 ENSDARG00000061797 152 0.995 - - - - - - - - 0.995 zgc:154006 [Source:ZFIN;Acc:ZDB-GENE-061013-134]
89. exoc1 ENSDARG00000043019 819 0.995 - 0.995 - - - - - - - exocyst complex component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1057]
90. SLC6A16_1 SLC6A16_1 1130 0.995 - 0.995 - - - - - - -
91. acmsd ENSDARG00000062549 201 0.995 - 0.995 - - - - - - - aminocarboxymuconate semialdehyde decarboxylase [Source:ZFIN;Acc:ZDB-GENE-070410-103]
92. mxf ENSDARG00000026049 195 0.995 - 0.995 - - - - - - - myxovirus (influenza virus) resistance F [Source:ZFIN;Acc:ZDB-GENE-030721-9]
93. prmt6 ENSDARG00000069706 484 0.994 - 0.994 - - - - - - - protein arginine methyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040914-7]
94. arih1 ENSDARG00000003616, ENSDARG00000109413 1739 0.994 - 0.994 - - - - - - - ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5213]
95. zgc:113208 ENSDARG00000035610, ENSDARG00000109302 1095 0.994 - 0.994 - - - - - - - zgc:113208 [Source:ZFIN;Acc:ZDB-GENE-050417-450]
96. C13H10orf54 C13H10orf54 450 0.994 - 0.994 - - - - - - -
97. kif3a ENSDARG00000087538, ENSDARG00000109880, ENSDARG00000117005 1216 0.994 - 0.994 - - - - - - - kinesin family member 3A [Source:ZFIN;Acc:ZDB-GENE-050417-71]
98. CASK CASK 1750 0.994 - 0.994 - - - - - - -
99. wu:fb12e11 wu:fb12e11 2332 0.994 - 0.994 - - - - - - -
100. dnajb5 ENSDARG00000052881, ENSDARG00000116664 885 0.994 - 0.994 - - - - - - - DnaJ (Hsp40) homolog, subfamily B, member 5 [Source:ZFIN;Acc:ZDB-GENE-070705-308]

There are 1065 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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