Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LDHB

Gene Name Gene ID Reads Annotation
LDHB ENSGALG00000035836 169726 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]











Genes with expression patterns similar to LDHB

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LDHB ENSGALG00000035836 169726 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
2. HES5 ENSGALG00000001141 6514 3.831 - - 0.722 0.700 - 0.859 - - 0.812 0.738 hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
3. CRABP-I ENSGALG00000003193 67258 3.172 - - 0.793 - - 0.875 - - 0.775 0.729 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
4. MIF ENSGALG00000006326 109683 2.465 - - 0.816 - - 0.905 - - 0.744 - macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
5. HES6 ENSGALG00000028415 4830 2.328 - - - - - 0.847 - - 0.701 0.780 hes family bHLH transcription factor 6
6. ENSGALG00000027002 ENSGALG00000027002 7570 2.265 - - - - - 0.835 - - 0.703 0.727
7. TAGLN3 ENSGALG00000015379 7865 2.263 - - - - - 0.814 - - 0.747 0.702 transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
8. MARCKSL1 ENSGALG00000032335 88728 1.654 - - - - - 0.866 - - 0.788 - MARCKS like 1 [Source:NCBI gene;Acc:770764]
9. ENO1 ENSGALG00000002377 251226 1.619 - 0.834 - - - 0.785 - - - - enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
10. CCT4 ENSGALG00000008812 78267 1.605 - - - - - 0.791 - - 0.814 - chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
11. CKB ENSGALG00000011511 2100 1.594 - - - - - 0.836 - - - 0.758 creatine kinase B [Source:NCBI gene;Acc:396248]
12. PTPRZ1 ENSGALG00000040114 3410 1.548 - - - - - 0.804 - - - 0.744 protein tyrosine phosphatase, receptor type Z1 [Source:NCBI gene;Acc:396403]
13. TMSB4X ENSGALG00000026383 293046 1.547 - - - - - 0.788 - - 0.759 - Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
14. PROCA1 668 1.54 - - - - - 0.831 - - - 0.709 protein interacting with cyclin A1
15. ENPP2 ENSGALG00000032746 6086 1.539 - - - - - 0.776 - - 0.763 - ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:NCBI gene;Acc:420361]
16. CCT5 ENSGALG00000013041 56190 1.529 - 0.718 - - 0.811 - - - - - chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
17. HSPA8 ENSGALG00000006512 124825 1.527 - 0.708 - - - 0.819 - - - - heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
18. RGMA ENSGALG00000039173 12874 1.515 - - - - - 0.784 - - 0.731 - repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
19. SLC35F1 ENSGALG00000029011 14728 1.515 - - - - - 0.783 - - - 0.732 solute carrier family 35 member F1 [Source:HGNC Symbol;Acc:HGNC:21483]
20. DLL1 ENSGALG00000011182 1613 1.515 - - - - - 0.760 - - - 0.755 delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
21. ENSGALG00000027373 ENSGALG00000027373 2129 1.511 - - - - - 0.794 - - - 0.717
22. SRGAP3 ENSGALG00000008378 4331 1.51 - - - - - 0.757 - - 0.753 - SLIT-ROBO Rho GTPase activating protein 3 [Source:NCBI gene;Acc:416115]
23. PAX3 ENSGALG00000030944 2987 1.486 - - - - - 0.780 - - 0.706 - paired box 3 [Source:NCBI gene;Acc:374127]
24. CIRBP ENSGALG00000030918 309258 1.475 - 0.713 - - - 0.762 - - - - cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. FZD3 ENSGALG00000042308 3356 1.435 - - - - - 0.708 - - 0.727 - frizzled class receptor 3 [Source:NCBI gene;Acc:395572]
26. EIF5A2 ENSGALG00000009309 143671 1.423 - - - - - 0.720 - - 0.703 - eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
27. H2AFZ ENSGALG00000014023 117824 1.42 - 0.705 - - - - - - 0.715 - H2A histone family, member Z [Source:NCBI gene;Acc:426361]
28. G3BP1 ENSGALG00000004160 36795 1.415 - 0.707 - - - - - 0.708 - - G3BP stress granule assembly factor 1 [Source:NCBI gene;Acc:416265]
29. GADD45_1 GADD45_1 1433 1.402 - - - - - 0.700 - - - 0.702
30. SMOC1 ENSGALG00000009415 2403 0.898 - - - - - 0.898 - - - - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
31. MYL4 ENSGALG00000000585 16982 0.896 - - - - - 0.896 - - - - myosin, light chain 4, alkali; atrial, embryonic [Source:NCBI gene;Acc:396472]
32. TUBB2C TUBB2C 44249 0.892 - - - - - 0.892 - - - -
33. GPR176 ENSGALG00000009619 5804 0.876 - - - - - 0.876 - - - - G protein-coupled receptor 176 [Source:HGNC Symbol;Acc:HGNC:32370]
34. PRTG ENSGALG00000037336 34665 0.859 - - - - - 0.859 - - - - protogenin [Source:NCBI gene;Acc:415407]
35. OPTC ENSGALG00000003554 3698 0.849 - - - - - 0.849 - - - - opticin [Source:NCBI gene;Acc:395130]
36. LASP-2 LASP-2 4415 0.849 - - - - - 0.849 - - - -
37. PKM ENSGALG00000001992 93960 0.848 - - - - - - - - 0.848 - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
38. JSC JSC 7982 0.842 - - - - - 0.842 - - - -
39. ALDOC ENSGALG00000026077 106910 0.842 - - - - - 0.842 - - - - aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
40. HEY1 ENSGALG00000035031 8795 0.84 - - - - - - - - 0.840 - hes related family bHLH transcription factor with YRPW motif 1 [Source:HGNC Symbol;Acc:HGNC:4880]
41. RBM38 ENSGALG00000026081 7115 0.839 - - - - - 0.839 - - - - RNA binding motif protein 38 [Source:NCBI gene;Acc:768866]
42. AHSA1 ENSGALG00000010463 15252 0.834 - - - - - 0.834 - - - - activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]
43. PGK1 ENSGALG00000007936 70101 0.834 - - - - - 0.834 - - - - phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
44. CERCAM ENSGALG00000004986 5158 0.827 - - - - - 0.827 - - - - cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
45. AKAP1 ENSGALG00000005575 12051 0.822 - - - - 0.822 - - - - - A-kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:367]
46. ZBTB16 ENSGALG00000038540 5544 0.812 - - - - - 0.812 - - - - Gallus gallus zinc finger and BTB domain containing 32 (ZBTB32), mRNA. [Source:RefSeq mRNA;Acc:NM_001321488]
47. COL14A1 ENSGALG00000037675 2652 0.809 - - - - - 0.809 - - - - collagen type XIV alpha 1 chain [Source:NCBI gene;Acc:396276]
48. LGR5 ENSGALG00000010163 2931 0.809 - - - - - 0.809 - - - - leucine rich repeat containing G protein-coupled receptor 5 [Source:HGNC Symbol;Acc:HGNC:4504]
49. ZRANB2 ENSGALG00000011340 18994 0.805 - - - - 0.805 - - - - - zinc finger RANBP2-type containing 2 [Source:NCBI gene;Acc:424717]
50. GNG10 ENSGALG00000015683 6905 0.804 - - - - - 0.804 - - - - G protein subunit gamma 10 [Source:NCBI gene;Acc:769603]
51. EYA2 ENSGALG00000004508 939 0.801 - - - - - 0.801 - - - - Gallus gallus EYA transcriptional coactivator and phosphatase 2 (EYA2), mRNA. [Source:RefSeq mRNA;Acc:NM_204915]
52. SRPR SRPR 21067 0.799 - - - - - 0.799 - - - -
53. HOXD4 ENSGALG00000023419 6073 0.799 - - - - - 0.799 - - - - homeobox D4 [Source:NCBI gene;Acc:424139]
54. PDCD5 ENSGALG00000004648 22576 0.797 - - - - 0.797 - - - - - programmed cell death 5 [Source:NCBI gene;Acc:415765]
55. FABP7 ENSGALG00000038933 6780 0.794 - - - - - 0.794 - - - - fatty acid binding protein 7 [Source:NCBI gene;Acc:396246]
56. GRM4 ENSGALG00000002840 2250 0.793 - - - - - 0.793 - - - - glutamate receptor, metabotropic 4, transcript variant X2
57. WSCD2 ENSGALG00000004849 477 0.79 - - - - - 0.790 - - - - WSC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29117]
58. IRX2 ENSGALG00000013193 2170 0.787 - - - - - 0.787 - - - - iroquois homeobox 2 [Source:NCBI gene;Acc:373975]
59. NCAM1 ENSGALG00000007839 19929 0.784 - - - - - 0.784 - - - - Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001242604]
60. TMEM108 ENSGALG00000036412 2903 0.784 - - - - - 0.784 - - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
61. ACVR2B ENSGALG00000006158 8692 0.783 - - - - - - - - 0.783 - activin A receptor type 2B [Source:NCBI gene;Acc:374213]
62. SDC1 ENSGALG00000016480 13737 0.781 0.781 - - - - - - - - - syndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
63. EIF5 ENSGALG00000011464 62584 0.779 - 0.779 - - - - - - - - eukaryotic translation initiation factor 5 [Source:NCBI gene;Acc:423479]
64. KIF23 ENSGALG00000008095 9919 0.777 - - - - - - - 0.777 - - kinesin family member 23 [Source:NCBI gene;Acc:415567]
65. FST ENSGALG00000014908 3182 0.776 - - - - - 0.776 - - - - follistatin [Source:NCBI gene;Acc:396119]
66. FGFR3 ENSGALG00000015708 16853 0.774 - - - - - 0.774 - - - - fibroblast growth factor receptor 3 [Source:NCBI gene;Acc:396515]
67. ZIC1 ENSGALG00000040532 6543 0.772 - - - - - - - - 0.772 - Zic family member 1 [Source:NCBI gene;Acc:374103]
68. EIF3M ENSGALG00000012109 38661 0.77 - - - - 0.770 - - - - - eukaryotic translation initiation factor 3 subunit M [Source:NCBI gene;Acc:421602]
69. MT-CYB MT-CYB 882159 0.77 - - - - 0.770 - - - - -
70. SOX10 ENSGALG00000012290 3942 0.768 - - - - - 0.768 - - - - SRY-box 10 [Source:NCBI gene;Acc:395573]
71. PAX-7 PAX-7 3856 0.768 - - - - - 0.768 - - - -
72. USPL1 ENSGALG00000017079 6263 0.766 - - - - - - - 0.766 - - ubiquitin specific peptidase like 1 [Source:NCBI gene;Acc:395436]
73. DPYSL4 ENSGALG00000010490 3431 0.765 - - - - - - - - 0.765 - dihydropyrimidinase like 4 [Source:HGNC Symbol;Acc:HGNC:3016]
74. LFNG ENSGALG00000038515 5178 0.764 - - - - - 0.764 - - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
75. RPS23 ENSGALG00000015617 430299 0.764 0.764 - - - - - - - - - ribosomal protein S23
76. MRPL20 ENSGALG00000001542 28764 0.763 - - - - - 0.763 - - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
77. COLGALT2 ENSGALG00000038320 854 0.758 - - - - - 0.758 - - - - collagen beta(1-O)galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16790]
78. USP14 ENSGALG00000014920 18778 0.757 - - - - - 0.757 - - - - ubiquitin specific peptidase 14 [Source:HGNC Symbol;Acc:HGNC:12612]
79. WDR70 ENSGALG00000003708 5835 0.755 - - - - - - - 0.755 - - WD repeat domain 70 [Source:NCBI gene;Acc:427444]
80. LIPG ENSGALG00000043734 2490 0.755 - - - - - 0.755 - - - - lipase G, endothelial type [Source:HGNC Symbol;Acc:HGNC:6623]
81. TSPAN3 ENSGALG00000002774 28811 0.754 - - - - - 0.754 - - - - tetraspanin 3 [Source:NCBI gene;Acc:415348]
82. CHN1 ENSGALG00000009293 6415 0.754 - - - - - - - - - 0.754 chimerin 1 [Source:NCBI gene;Acc:429021]
83. TCF15 ENSGALG00000026276 3646 0.754 - - - - - - - 0.754 - - transcription factor 15 [Source:NCBI gene;Acc:395788]
84. C1QTNF3 ENSGALG00000027887 8646 0.754 - - - - - 0.754 - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
85. SLC25A33 ENSGALG00000002519 4173 0.754 - - - - - - - 0.754 - - solute carrier family 25 member 33 [Source:HGNC Symbol;Acc:HGNC:29681]
86. KRR1 ENSGALG00000010227 11783 0.754 - - - - 0.754 - - - - - KRR1, small subunit processome component homolog [Source:NCBI gene;Acc:417863]
87. APCDD1 ENSGALG00000000894 1482 0.753 - - - - - - - 0.753 - - APC down-regulated 1 [Source:NCBI gene;Acc:426765]
88. TTYH2 ENSGALG00000026940 15628 0.753 - - - - - - - - 0.753 - tweety family member 2 [Source:HGNC Symbol;Acc:HGNC:13877]
89. MTFR1L ENSGALG00000000998 3457 0.753 - - - - - - - 0.753 - - mitochondrial fission regulator 1 like [Source:HGNC Symbol;Acc:HGNC:28836]
90. ORAI2 ENSGALG00000001837 2528 0.752 - - - - - - - 0.752 - - ORAI calcium release-activated calcium modulator 2 [Source:NCBI gene;Acc:417509]
91. CDC42 ENSGALG00000004796 59878 0.752 - - - - - - 0.752 - - - cell division cycle 42 [Source:NCBI gene;Acc:395917]
92. NFASC ENSGALG00000031776 4264 0.752 - - - - - 0.752 - - - - neurofascin [Source:NCBI gene;Acc:419824]
93. HIAT1 HIAT1 447 0.752 - - - - - - - 0.752 - -
94. ENSGALG00000026592 ENSGALG00000026592 4331 0.751 - - - - - - - 0.751 - -
95. ECHDC1 ENSGALG00000014828 958 0.75 - - - - - - - 0.750 - - ethylmalonyl-CoA decarboxylase 1 [Source:NCBI gene;Acc:769021]
96. FAM171B ENSGALG00000002646 837 0.75 - - - - - 0.750 - - - - family with sequence similarity 171 member B [Source:HGNC Symbol;Acc:HGNC:29412]
97. SNRNP25 ENSGALG00000026559 2097 0.75 - - - - - - - 0.750 - - small nuclear ribonucleoprotein U11/U12 subunit 25 [Source:HGNC Symbol;Acc:HGNC:14161]
98. DR1 ENSGALG00000005858 8016 0.75 - - - - - - - 0.750 - - down-regulator of transcription 1 [Source:NCBI gene;Acc:424496]
99. CSRNP1 ENSGALG00000027905 3141 0.75 - - - - - - - 0.750 - - cysteine and serine rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
100. CHMP7 ENSGALG00000000409 8967 0.749 - - - - - - - 0.749 - - charged multivesicular body protein 7 [Source:NCBI gene;Acc:419535]

There are 94 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA