Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LDB2

Gene Name Gene ID Reads Annotation
LDB2 ENSGALG00000014485 22490 LIM domain binding 2 [Source:NCBI gene;Acc:395631]











Genes with expression patterns similar to LDB2

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LDB2 ENSGALG00000014485 22490 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 LIM domain binding 2 [Source:NCBI gene;Acc:395631]
2. PCNP ENSGALG00000015330 15750 1.616 - - - - - - 0.864 - - 0.752 PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
3. MRPL20 ENSGALG00000001542 28764 1.571 - - - - - - 0.850 0.721 - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
4. NIFK ENSGALG00000011650 14990 1.571 - - - - - - 0.823 0.748 - - nucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]
5. Mar-05 Mar-05 6330 1.562 - - - - - - 0.808 0.754 - -
6. SMC4 ENSGALG00000009553 15715 1.543 - - - - - - 0.757 - - 0.786 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
7. ENSGALG00000009044 ENSGALG00000009044 14492 1.524 - - - - - - 0.736 - - 0.788
8. PGD ENSGALG00000002797 15115 1.517 - - - - - - 0.705 - - 0.812 phosphogluconate dehydrogenase [Source:NCBI gene;Acc:419450]
9. MAN2A1 ENSGALG00000000255 4543 1.516 - - - - - - 0.716 - - 0.800 mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
10. TMED7 ENSGALG00000028484 21008 1.516 - - - - - - 0.808 - - 0.708 Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
11. ELOVL5 ENSGALG00000016314 18163 1.509 - - - - - - 0.769 0.740 - - ELOVL fatty acid elongase 5 [Source:NCBI gene;Acc:428646]
12. FANCL ENSGALG00000030022 7423 1.504 - - - - - - 0.726 - - 0.778 FA complementation group L [Source:NCBI gene;Acc:421202]
13. SVIL ENSGALG00000007331 12032 1.494 - - - - 0.722 - - - - 0.772 supervillin [Source:HGNC Symbol;Acc:HGNC:11480]
14. GXYLT1 ENSGALG00000009532 5682 1.492 - - - - - - 0.701 - - 0.791 glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
15. TMX3 ENSGALG00000013757 6387 1.491 - - - - - - 0.738 - - 0.753 Gallus gallus thioredoxin related transmembrane protein 3 (TMX3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001321606]
16. GPX8 ENSGALG00000026704 4497 1.47 - - - - - - 0.712 - - 0.758 glutathione peroxidase 8 (putative) [Source:HGNC Symbol;Acc:HGNC:33100]
17. ZBED4 ENSGALG00000032659 5313 1.445 - - - - - - 0.709 - - 0.736 zinc finger BED-type containing 4 [Source:NCBI gene;Acc:417734]
18. PTP4A2 ENSGALG00000003265 24826 1.437 - - - - - - 0.717 - - 0.720 protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
19. COL5A2 ENSGALG00000031112 18358 1.424 - - - - - - 0.700 - - 0.724 collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210]
20. SERINC1 ENSGALG00000014868 12484 0.881 - - - - - - 0.881 - - - serine incorporator 1 [Source:NCBI gene;Acc:421722]
21. MMD ENSGALG00000003078 21311 0.867 - - - - - - 0.867 - - - monocyte to macrophage differentiation associated [Source:NCBI gene;Acc:417397]
22. PEX2 ENSGALG00000035752 4427 0.86 - - - - - - - - - 0.860 peroxisomal biogenesis factor 2 [Source:NCBI gene;Acc:420192]
23. TMEM123 ENSGALG00000017185 6798 0.857 - - - - - - 0.857 - - - transmembrane protein 123 [Source:NCBI gene;Acc:418984]
24. EIF2S1 ENSGALG00000009565 63906 0.853 - - - - - - 0.853 - - - eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
25. TRPC4AP ENSGALG00000003147 3967 0.851 - - - - - - - - - 0.851 transient receptor potential cation channel subfamily C member 4 associated protein [Source:NCBI gene;Acc:428134]
26. PPIH ENSGALG00000004874 25558 0.847 - - - - - - 0.847 - - - peptidylprolyl isomerase H [Source:NCBI gene;Acc:419507]
27. CRCP ENSGALG00000002587 8809 0.846 - - - - - - - - - 0.846 CGRP receptor component [Source:NCBI gene;Acc:396022]
28. SLC25A3 ENSGALG00000011514 62606 0.846 - - - - - - 0.846 - - - solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
29. TXNDC5 ENSGALG00000012784 4678 0.846 - - - - - - - - - 0.846 thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
30. SEC14L1 ENSGALG00000001684 2776 0.842 - - - - - - - - - 0.842 SEC14 like lipid binding 1 [Source:HGNC Symbol;Acc:HGNC:10698]
31. RBBP8 ENSGALG00000014982 3255 0.842 - - - - - - - - - 0.842 RB binding protein 8, endonuclease [Source:HGNC Symbol;Acc:HGNC:9891]
32. BLMH ENSGALG00000004259 36907 0.842 - - - - - - 0.842 - - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
33. GLO1 ENSGALG00000010127 31662 0.84 - - - - - - 0.840 - - - glyoxalase I [Source:HGNC Symbol;Acc:HGNC:4323]
34. ULK2 ENSGALG00000004727 10729 0.84 - - - - - - 0.840 - - - unc-51 like autophagy activating kinase 2 [Source:HGNC Symbol;Acc:HGNC:13480]
35. UQCRC2 ENSGALG00000002490 23477 0.84 - - - - - - 0.840 - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
36. RALB ENSGALG00000026493 14590 0.839 - - - - - - 0.839 - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
37. PDCD10 ENSGALG00000009477 7061 0.839 - - - - - - 0.839 - - - programmed cell death 10 [Source:NCBI gene;Acc:425003]
38. SRI ENSGALG00000008985 13865 0.838 - - - - - - 0.838 - - - sorcin [Source:NCBI gene;Acc:420538]
39. SEC11A ENSGALG00000037553 32123 0.837 - - - - - - 0.837 - - - SEC11 homolog A, signal peptidase complex subunit [Source:NCBI gene;Acc:415334]
40. PPP1R7 ENSGALG00000031766 22187 0.837 - - - - - - 0.837 - - - protein phosphatase 1 regulatory subunit 7 [Source:NCBI gene;Acc:424844]
41. EIF4A2 ENSGALG00000008684 58507 0.836 - - - - - - 0.836 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
42. COG5 ENSGALG00000042764 4205 0.835 - - - - - - - - - 0.835 component of oligomeric golgi complex 5 [Source:NCBI gene;Acc:417704]
43. XBP1 ENSGALG00000005796 14007 0.835 - - - - - - 0.835 - - - X-box binding protein 1 [Source:NCBI gene;Acc:416918]
44. ENSGALG00000006463 ENSGALG00000006463 45151 0.833 - - - - - - 0.833 - - -
45. TMEM9B ENSGALG00000005908 14074 0.832 - - - - - - - - - 0.832 TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
46. MORF4L1 ENSGALG00000008146 29940 0.831 - - - - - - 0.831 - - - mortality factor 4 like 1 [Source:NCBI gene;Acc:554283]
47. HMGB2 ENSGALG00000010745 89235 0.829 - - - - - - 0.829 - - - high mobility group box 2 [Source:NCBI gene;Acc:396482]
48. MRPS31 ENSGALG00000017033 9287 0.828 - - - - - - - - - 0.828 mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
49. NDUFS7 ENSGALG00000009703 19674 0.828 - - - - - - 0.828 - - - NADH:ubiquinone oxidoreductase core subunit S7 [Source:HGNC Symbol;Acc:HGNC:7714]
50. DEK ENSGALG00000012684 14179 0.827 - - - - - - 0.827 - - - DEK proto-oncogene [Source:NCBI gene;Acc:420828]
51. PPP2R5C ENSGALG00000029996 5759 0.827 - - - - - - 0.827 - - - protein phosphatase 2 regulatory subunit B'gamma [Source:NCBI gene;Acc:423460]
52. PPM1E ENSGALG00000005061 2606 0.825 - - - - - - - - - 0.825 protein phosphatase, Mg2+/Mn2+ dependent 1E [Source:HGNC Symbol;Acc:HGNC:19322]
53. PALLD ENSGALG00000009650 10803 0.824 - - - - - - - 0.824 - - palladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]
54. UTP23 ENSGALG00000032400 3601 0.824 - - - - - - - - - 0.824 UTP23, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:28224]
55. CSE1L ENSGALG00000004707 20653 0.823 - - - - - - 0.823 - - - chromosome segregation 1 like [Source:HGNC Symbol;Acc:HGNC:2431]
56. CCNA2 ENSGALG00000011881 2574 0.822 - - - - - - - - - 0.822 cyclin A2 [Source:NCBI gene;Acc:396172]
57. COX7A2 ENSGALG00000015906 62347 0.82 - - - - - - - - - 0.820 cytochrome c oxidase subunit 7A2 [Source:NCBI gene;Acc:772260]
58. HSPA4 ENSGALG00000040882 20966 0.819 - - - - - - 0.819 - - - heat shock protein family A (Hsp70) member 4 [Source:HGNC Symbol;Acc:HGNC:5237]
59. NCBP1 ENSGALG00000002087 8907 0.819 - - - - - - - - - 0.819 nuclear cap binding protein subunit 1 [Source:NCBI gene;Acc:427379]
60. RAD18 ENSGALG00000008368 7214 0.819 - - - - - - - - - 0.819 RAD18, E3 ubiquitin protein ligase [Source:NCBI gene;Acc:416114]
61. ENSGALG00000028992 ENSGALG00000028992 185077 0.819 - - - - - - - - - 0.819
62. EIF3B ENSGALG00000040999 49971 0.818 - - - - - - 0.818 - - - eukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]
63. GSTAL2 ENSGALG00000028551 4899 0.818 - - - - - - - - - 0.818 glutathione S-transferase alpha-like 2, transcript variant X4
64. RAMP2 ENSGALG00000024449 5860 0.817 - - - - - - - - - 0.817 receptor activity modifying protein 2 [Source:NCBI gene;Acc:420022]
65. CPT2 ENSGALG00000010681 3211 0.817 - - - - - - - - - 0.817 carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
66. CDH5 ENSGALG00000032349 8526 0.816 - - - - - - - - - 0.816 cadherin 5 [Source:NCBI gene;Acc:374068]
67. LPCAT2 ENSGALG00000003574 893 0.816 - - - - - - - - - 0.816 lysophosphatidylcholine acyltransferase 2 [Source:NCBI gene;Acc:415716]
68. SMC6 ENSGALG00000016467 3321 0.816 - - - - - - - - - 0.816 Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
69. SPDL1 ENSGALG00000001942 4403 0.815 - - - - - - - - - 0.815 spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
70. RAD21 ENSGALG00000029523 25658 0.814 - - - - - - 0.814 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
71. PLEKHG1 ENSGALG00000012395 2708 0.813 - - - - - - - - - 0.813 pleckstrin homology and RhoGEF domain containing G1 [Source:HGNC Symbol;Acc:HGNC:20884]
72. ODZ3 ODZ3 2213 0.813 - - - - - - - - - 0.813
73. RER1 ENSGALG00000021683 9074 0.813 - - - - - - - - - 0.813 retention in endoplasmic reticulum sorting receptor 1 [Source:NCBI gene;Acc:419397]
74. TM9SF2 ENSGALG00000016878 11548 0.812 - - - - - - 0.812 - - - transmembrane 9 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11865]
75. ARPC1B ENSGALG00000032588 2407 0.812 - - - - - - - - - 0.812 actin related protein 2/3 complex subunit 1B [Source:NCBI gene;Acc:416490]
76. SMAP1 ENSGALG00000015959 4665 0.812 - - - - - - - - - 0.812 small ArfGAP 1 [Source:HGNC Symbol;Acc:HGNC:19651]
77. PARP1 ENSGALG00000009228 39433 0.811 - - - - - - 0.811 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
78. RTN4R ENSGALG00000007732 1515 0.811 - - - - - - - - - 0.811 reticulon 4 receptor
79. TANGO2 ENSGALG00000002056 1971 0.811 - - - - - - - - - 0.811 transport and golgi organization 2 homolog [Source:NCBI gene;Acc:416784]
80. TACC3 ENSGALG00000015709 17336 0.81 - - - - - - 0.810 - - - transforming acidic coiled-coil containing protein 3 [Source:NCBI gene;Acc:422899]
81. CLINT1 ENSGALG00000003702 11269 0.81 - - - - - - 0.810 - - - clathrin interactor 1 [Source:NCBI gene;Acc:416240]
82. USP7 ENSGALG00000007307 2973 0.809 - - - - - - - - - 0.809 ubiquitin specific peptidase 7 [Source:NCBI gene;Acc:395126]
83. STRN3 ENSGALG00000040464 9045 0.809 - - - - - - 0.809 - - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
84. ARL13B ENSGALG00000015412 2968 0.808 - - - - - - - - - 0.808 ADP ribosylation factor like GTPase 13B [Source:HGNC Symbol;Acc:HGNC:25419]
85. DNAJC1 ENSGALG00000007914 8028 0.807 - - - - - - - - - 0.807 DnaJ heat shock protein family (Hsp40) member C1 [Source:HGNC Symbol;Acc:HGNC:20090]
86. RBX1 ENSGALG00000011993 26090 0.807 - - - - - - - - - 0.807 ring-box 1 [Source:NCBI gene;Acc:418001]
87. RABGGTB ENSGALG00000011388 11654 0.807 - - - - - - 0.807 - - - Rab geranylgeranyltransferase subunit beta [Source:HGNC Symbol;Acc:HGNC:9796]
88. NAA38 ENSGALG00000045783 11229 0.805 - - - - - - 0.805 - - - N(alpha)-acetyltransferase 38, NatC auxiliary subunit, transcript variant X3
89. SP3 ENSGALG00000031796 8997 0.805 - - - - - - - - - 0.805 Sp3 transcription factor [Source:NCBI gene;Acc:395302]
90. HOXA7 ENSGALG00000026989 6746 0.805 - - - - - - 0.805 - - - homeobox A7 [Source:NCBI gene;Acc:395290]
91. GRTP1 ENSGALG00000016828 3145 0.804 - - - - - - - - - 0.804 growth hormone regulated TBC protein 1 [Source:HGNC Symbol;Acc:HGNC:20310]
92. C14orf80 C14orf80 1921 0.803 - - - - - - - - - 0.803
93. YWHAZ ENSGALG00000031387 84985 0.803 - - - - - - 0.803 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
94. SNRNP48 ENSGALG00000013005 1468 0.803 - - - - - - - - - 0.803 small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
95. BCAP29 ENSGALG00000008009 8519 0.803 - - - - - - - 0.803 - - B cell receptor associated protein 29 [Source:NCBI gene;Acc:417702]
96. TMEM243 ENSGALG00000006633 1592 0.803 - - - - - - - - - 0.803 transmembrane protein 243 [Source:HGNC Symbol;Acc:HGNC:21707]
97. HYAL3 ENSGALG00000029000 712 0.802 - - - - - - - - - 0.802 hyaluronoglucosaminidase 3 [Source:HGNC Symbol;Acc:HGNC:5322]
98. CTSO ENSGALG00000009373 4186 0.802 - - - - - - - - - 0.802 cathepsin O [Source:NCBI gene;Acc:422410]
99. CPNE1 ENSGALG00000040856 610 0.802 - - - - - - - - - 0.802 copine 1 [Source:NCBI gene;Acc:419134]
100. PPDPF ENSGALG00000005849 16711 0.802 - - - - - - 0.802 - - - pancreatic progenitor cell differentiation and proliferation factor [Source:NCBI gene;Acc:419245]

There are 577 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA