Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LDB1

Gene Name Gene ID Reads Annotation
LDB1 ENSGALG00000007641 2 LIM domain binding 1 [Source:NCBI gene;Acc:395952]











Genes with expression patterns similar to LDB1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LDB1 ENSGALG00000007641 2 4 - - 1.000 1.000 - 1.000 - - - 1.000 LIM domain binding 1 [Source:NCBI gene;Acc:395952]
2. RPS6KA2 ENSGALG00000011473 2 2 - - 1.000 - - 1.000 - - - - ribosomal protein S6 kinase A2 [Source:HGNC Symbol;Acc:HGNC:10431]
3. KLHL23 ENSGALG00000020737 13 2 - - - 1.000 - - - - - 1.000 kelch like family member 23 [Source:HGNC Symbol;Acc:HGNC:27506]
4. SP-A SP-A 9 1.937 - - 0.937 - - 1.000 - - - -
5. ZMAT3 ENSGALG00000040948 4 1.883 - - - 1.000 - - - - - 0.883 zinc finger matrin-type 3 [Source:HGNC Symbol;Acc:HGNC:29983]
6. ENSGALG00000026782 ENSGALG00000026782 0 1 - - - 1.000 - - - - - -
7. PTPN3 ENSGALG00000022909 6 1 - - - - - 1.000 - - - - protein tyrosine phosphatase, non-receptor type 3 [Source:HGNC Symbol;Acc:HGNC:9655]
8. SOD3 ENSGALG00000018557 16 1 - - - - - 1.000 - - - - superoxide dismutase 3 [Source:HGNC Symbol;Acc:HGNC:11181]
9. ENSGALG00000002444 ENSGALG00000002444 4 1 - - 1.000 - - - - - - -
10. COR7A COR7A 3 1 - - 1.000 - - - - - - -
11. SCARNA14 SCARNA14 1 1 - - 1.000 - - - - - - -
12. C17orf105 C17orf105 11 1 - - - - - 1.000 - - - -
13. BICD2 ENSGALG00000005249 17 1 - - - - - - - - - 1.000 BICD cargo adaptor 2 [Source:HGNC Symbol;Acc:HGNC:17208]
14. C12orf50 ENSGALG00000045093 9 1 - - 1.000 - - - - - - - chromosome 12 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:26665]
15. CDH8 ENSGALG00000005319 2 1 - - - - - - - - - 1.000 cadherin 8 [Source:NCBI gene;Acc:427553]
16. F-KER ENSGALG00000028706 0 1 - - - - - 1.000 - - - - feather keratin I [Source:NCBI gene;Acc:769269]
17. RNF217 ENSGALG00000013651 1 1 - - - - - 1.000 - - - - ring finger protein 217 [Source:HGNC Symbol;Acc:HGNC:21487]
18. C2 ENSGALG00000035721 5 1 - - - 1.000 - - - - - - complement C2 [Source:HGNC Symbol;Acc:HGNC:1248]
19. AGRP ENSGALG00000002244 27 1 - - - - - 1.000 - - - - agouti related neuropeptide [Source:NCBI gene;Acc:427535]
20. TEKT1 ENSGALG00000006064 18 1 - - - 1.000 - - - - - - tektin 1 [Source:HGNC Symbol;Acc:HGNC:15534]
21. SEC16A ENSGALG00000002364 19 1 - - - - - 1.000 - - - - SEC16 homolog A, endoplasmic reticulum export factor, transcript variant X1
22. ENSGALG00000028116 ENSGALG00000028116 0 1 - - - - - 1.000 - - - -
23. ENSGALG00000003611 ENSGALG00000003611 22 1 - - 1.000 - - - - - - -
24. ENSGALG00000010657 ENSGALG00000010657 1 1 - - 1.000 - - - - - - -
25. MINPP1 ENSGALG00000003695 1 1 - - - - - 1.000 - - - - multiple inositol-polyphosphate phosphatase 1 [Source:NCBI gene;Acc:395356]
26. ITGB6 ENSGALG00000011141 2 1 - - 1.000 - - - - - - - integrin subunit beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]
27. ODF2L ENSGALG00000006804 10 1 - - - - - - - - - 1.000 outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
28. ARHGEF17 6 1 - - - - - 1.000 - - - - Rho guanine nucleotide exchange factor 17
29. FAM83A ENSGALG00000041748 8 1 - - - - - - - - - 1.000 family with sequence similarity 83 member A [Source:HGNC Symbol;Acc:HGNC:28210]
30. GDNF ENSGALG00000003716 7 1 - - - 1.000 - - - - - - glial cell derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:4232]
31. PAPOLG ENSGALG00000007853 1 1 - - 1.000 - - - - - - - poly(A) polymerase gamma [Source:HGNC Symbol;Acc:HGNC:14982]
32. ENSGALG00000018626 ENSGALG00000018626 1 1 - - - - - - - - - 1.000
33. SLC15A2 ENSGALG00000011671 1 1 - - 1.000 - - - - - - - Gallus gallus solute carrier family 15 member 2 (SLC15A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319028]
34. NOXO1 ENSGALG00000005572 14 1 - - 1.000 - - - - - - - NADPH oxidase organizer 1 [Source:HGNC Symbol;Acc:HGNC:19404]
35. CACNA1H ENSGALG00000005215 110 1 - - - - - - - - - 1.000 calcium voltage-gated channel subunit alpha1 H [Source:HGNC Symbol;Acc:HGNC:1395]
36. VMO1 ENSGALG00000017172 1 1 - - - 1.000 - - - - - - vitelline membrane outer layer 1 homolog [Source:NCBI gene;Acc:418974]
37. VTG2 ENSGALG00000001863 1 1 - - - 1.000 - - - - - - vitellogenin 2 [Source:NCBI gene;Acc:424533]
38. BAFF BAFF 40 1 - - - - - 1.000 - - - -
39. LIN52 ENSGALG00000020419 37 1 - - - - - - - - - 1.000 lin-52 DREAM MuvB core complex component [Source:NCBI gene;Acc:423346]
40. RAB37 ENSGALG00000027789 17 1 - - - - - - - - - 1.000 RAB37, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30268]
41. TMEM52B ENSGALG00000034698 169 1 - - - 1.000 - - - - - - transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
42. ENSGALG00000002074 ENSGALG00000002074 1 1 - - 1.000 - - - - - - -
43. MFSD11 ENSGALG00000001777 8 1 - - - - - 1.000 - - - - major facilitator superfamily domain containing 11 [Source:HGNC Symbol;Acc:HGNC:25458]
44. MARCO ENSGALG00000012119 5 1 - - - - - - - - - 1.000 macrophage receptor with collagenous structure [Source:NCBI gene;Acc:395488]
45. CBL ENSGALG00000029077 6 1 - - - - - 1.000 - - - - Cbl proto-oncogene [Source:NCBI gene;Acc:374038]
46. SLC4A2 ENSGALG00000034284 3 1 - - - - - - - - - 1.000 solute carrier family 4 member 2 [Source:NCBI gene;Acc:395809]
47. WFDC2 ENSGALG00000031164 37 1 - - - - - 1.000 - - - - WAP four-disulfide core domain 2 [Source:HGNC Symbol;Acc:HGNC:15939]
48. SLC16A3 ENSGALG00000002728 323 1 - - 1.000 - - - - - - - solute carrier family 16 member 3 [Source:NCBI gene;Acc:395383]
49. IMPG1 ENSGALG00000015897 4 1 - - - - - - - - - 1.000 interphotoreceptor matrix proteoglycan 1 [Source:NCBI gene;Acc:374088]
50. CNKSR3 ENSGALG00000027159 41 1 - - - 1.000 - - - - - - CNKSR family member 3, transcript variant X2
51. BCAS1 ENSGALG00000007796 379 1 - - - - - - - - - 1.000 breast carcinoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:974]
52. RBKS ENSGALG00000010043 3 1 - - - - - - - - - 1.000 ribokinase [Source:HGNC Symbol;Acc:HGNC:30325]
53. FXR FXR 52 1 - - - 1.000 - - - - - -
54. SNX8 ENSGALG00000004255 4 1 - - - - - 1.000 - - - - sorting nexin 8 [Source:HGNC Symbol;Acc:HGNC:14972]
55. TMEM259 ENSGALG00000002029 8 1 - - - - - - - - - 1.000 transmembrane protein 259 [Source:HGNC Symbol;Acc:HGNC:17039]
56. LRRC72 9 1 - - - 1.000 - - - - - - leucine rich repeat containing 72, transcript variant X4
57. SLC28A3 ENSGALG00000012593 131 1 - - 1.000 - - - - - - - solute carrier family 28 member 3 [Source:HGNC Symbol;Acc:HGNC:16484]
58. ERI3 ENSGALG00000010106 995 1 - - - - - 1.000 - - - - ERI1 exoribonuclease family member 3 [Source:HGNC Symbol;Acc:HGNC:17276]
59. ENSGALG00000002252 ENSGALG00000002252 19 1 - - - - - - - - - 1.000
60. ENSGALG00000021836 ENSGALG00000021836 1 1 - - 1.000 - - - - - - -
61. TMEM189 ENSGALG00000026906 14 1 - - - - - 1.000 - - - - transmembrane protein 189 [Source:NCBI gene;Acc:100538348]
62. MAVS ENSGALG00000040428 1 1 - - - - - 1.000 - - - - mitochondrial antiviral signaling protein [Source:NCBI gene;Acc:422936]
63. THBD ENSGALG00000044442 6 1 - - - 1.000 - - - - - - thrombomodulin
64. gga-mir-10a ENSGALG00000021952 4 1 - - - - - 1.000 - - - - gga-mir-10a [Source:miRBase;Acc:MI0007559]
65. FLI1 ENSGALG00000001161 2 1 - - - 1.000 - - - - - - Fli-1 proto-oncogene, ETS transcription factor [Source:NCBI gene;Acc:419723]
66. SH3PXD2B ENSGALG00000002831 7 1 - - 1.000 - - - - - - - SH3 and PX domains 2B [Source:HGNC Symbol;Acc:HGNC:29242]
67. BFGF BFGF 1 1 - - - - - - - - - 1.000
68. UMODL1 ENSGALG00000016157 1 1 - - - 1.000 - - - - - - uromodulin like 1 [Source:HGNC Symbol;Acc:HGNC:12560]
69. STX3 ENSGALG00000035153 1 1 - - - - - 1.000 - - - - syntaxin 3
70. HOXD9 ENSGALG00000027513 89 1 - - - - - - - - - 1.000 homeobox D9 [Source:HGNC Symbol;Acc:HGNC:5140]
71. ADCY1 ENSGALG00000031170 4 1 - - - - - - - - - 1.000 adenylate cyclase 1 [Source:HGNC Symbol;Acc:HGNC:232]
72. EFCAB7 ENSGALG00000010998 13 1 - - 1.000 - - - - - - - EF-hand calcium binding domain 7 [Source:HGNC Symbol;Acc:HGNC:29379]
73. GRID2 ENSGALG00000010397 6 1 - - - 1.000 - - - - - - glutamate ionotropic receptor delta type subunit 2 [Source:HGNC Symbol;Acc:HGNC:4576]
74. NOL4 ENSGALG00000015198 1 1 - - 1.000 - - - - - - - nucleolar protein 4 [Source:HGNC Symbol;Acc:HGNC:7870]
75. ANKRD34B ENSGALG00000044727 9 1 - - 1.000 - - - - - - - ankyrin repeat domain 34B [Source:HGNC Symbol;Acc:HGNC:33736]
76. MADCAM1 ENSGALG00000028341 6 1 - - - 1.000 - - - - - - mucosal vascular addressin cell adhesion molecule 1
77. LNX2 LNX2 4 1 - - - - - - - - - 1.000
78. PLD5 ENSGALG00000010737 5 1 - - - - - 1.000 - - - - phospholipase D family member 5 [Source:NCBI gene;Acc:421501]
79. ADAM33 ENSGALG00000030602 7 1 - - - - - - - - - 1.000 ADAM metallopeptidase domain 33 [Source:NCBI gene;Acc:422948]
80. ABCD4 ENSGALG00000010229 3 1 - - - - - - - - - 1.000 ATP binding cassette subfamily D member 4 [Source:HGNC Symbol;Acc:HGNC:68]
81. ENSGALG00000020676 ENSGALG00000020676 2 1 - - 1.000 - - - - - - -
82. FARP2 ENSGALG00000005788 6 1 - - - - - 1.000 - - - - FERM, ARH/RhoGEF and pleckstrin domain protein 2 [Source:HGNC Symbol;Acc:HGNC:16460]
83. TSHB ENSGALG00000002550 0 1 - - - 1.000 - - - - - - thyroid stimulating hormone beta [Source:NCBI gene;Acc:395937]
84. CCDC60 ENSGALG00000046262 0 1 - - - 1.000 - - - - - - coiled-coil domain containing 60 [Source:HGNC Symbol;Acc:HGNC:28610]
85. ENSGALG00000021106 ENSGALG00000021106 35 1 - - - - - - - - - 1.000
86. ENSGALG00000023927 ENSGALG00000023927 0 1 - - - 1.000 - - - - - -
87. HID1 ENSGALG00000007808 2 1 - - - - - 1.000 - - - - HID1 domain containing [Source:HGNC Symbol;Acc:HGNC:15736]
88. RBM46 ENSGALG00000009278 98 1 - - 1.000 - - - - - - - RNA binding motif protein 46 [Source:HGNC Symbol;Acc:HGNC:28401]
89. CORO6 ENSGALG00000028949 21 1 - - - - - 1.000 - - - - coronin 6 [Source:HGNC Symbol;Acc:HGNC:21356]
90. ZNRF2 ENSGALG00000031163 0 1 - - - - - 1.000 - - - - zinc and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:22316]
91. DLGAP2 ENSGALG00000032937 2 1 - - 1.000 - - - - - - - DLG associated protein 2 [Source:HGNC Symbol;Acc:HGNC:2906]
92. ENSGALG00000015905 ENSGALG00000015905 5 1 - - 1.000 - - - - - - -
93. FBXO43 ENSGALG00000038940 7 1 - - - - - - - - - 1.000 F-box protein 43 [Source:HGNC Symbol;Acc:HGNC:28521]
94. ENSGALG00000010222 ENSGALG00000010222 4 1 - - - - - - - - - 1.000
95. FKHR FKHR 1 1 - - - - - 1.000 - - - -
96. CHSY1 ENSGALG00000026468 4 1 - - - - - - - - - 1.000 chondroitin sulfate synthase 1 [Source:HGNC Symbol;Acc:HGNC:17198]
97. ENSGALG00000013409 ENSGALG00000013409 4 1 - - - - - 1.000 - - - -
98. MGAT4C ENSGALG00000000225, ENSGALG00000028360 358 1 - - - - - - - - - 1.000 MGAT4 family member C [Source:HGNC Symbol;Acc:HGNC:30871]
99. SLC13A1 ENSGALG00000008874 2 1 - - - - - - - - - 1.000 solute carrier family 13 member 1 [Source:HGNC Symbol;Acc:HGNC:10916]
100. PGBD5 ENSGALG00000011111 1 1 - - - 1.000 - - - - - - piggyBac transposable element derived 5 [Source:HGNC Symbol;Acc:HGNC:19405]

There are 202 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA