Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LDB1

Gene Name Gene ID Reads Annotation
LDB1 ENSGALG00000007641 2 LIM domain binding 1 [Source:NCBI gene;Acc:395952]











Genes with expression patterns similar to LDB1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LDB1 ENSGALG00000007641 2 4 - - 1.000 1.000 - 1.000 - - - 1.000 LIM domain binding 1 [Source:NCBI gene;Acc:395952]
2. RPS6KA2 ENSGALG00000011473 2 2 - - 1.000 - - 1.000 - - - - ribosomal protein S6 kinase A2 [Source:HGNC Symbol;Acc:HGNC:10431]
3. KLHL23 ENSGALG00000020737 13 2 - - - 1.000 - - - - - 1.000 kelch like family member 23 [Source:HGNC Symbol;Acc:HGNC:27506]
4. SP-A SP-A 9 1.937 - - 0.937 - - 1.000 - - - -
5. ZMAT3 ENSGALG00000040948 4 1.883 - - - 1.000 - - - - - 0.883 zinc finger matrin-type 3 [Source:HGNC Symbol;Acc:HGNC:29983]
6. VWC2L ENSGALG00000003472 13 1 - - - 1.000 - - - - - - von Willebrand factor C domain containing protein 2 like [Source:HGNC Symbol;Acc:HGNC:37203]
7. ENSGALG00000027162 ENSGALG00000027162 8 1 - - - 1.000 - - - - - -
8. GRHL2 ENSGALG00000037687 3 1 - - - - - - - - - 1.000 grainyhead like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:2799]
9. GTF3C3 ENSGALG00000007958 6 1 - - - - - 1.000 - - - - general transcription factor IIIC subunit 3 [Source:NCBI gene;Acc:424052]
10. OVST_1 ENSGALG00000011930 9 1 - - - - - 1.000 - - - - ovostatin [Source:NCBI gene;Acc:396151]
11. PITPNC1L ENSGALG00000002610 3 1 - - - - - 1.000 - - - - phosphatidylinositol transfer protein, cytoplasmic 1-like, transcript variant X2
12. GPA33 ENSGALG00000044138 1 1 - - 1.000 - - - - - - - glycoprotein A33 [Source:HGNC Symbol;Acc:HGNC:4445]
13. gga-mir-301a ENSGALG00000029989 5 1 - - - - - 1.000 - - - - gga-mir-301a [Source:miRBase;Acc:MI0001240]
14. POMGNT1 ENSGALG00000010351 3 1 - - 1.000 - - - - - - - protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [Source:HGNC Symbol;Acc:HGNC:19139]
15. CARF ENSGALG00000008474 6 1 - - - - - 1.000 - - - - calcium responsive transcription factor [Source:HGNC Symbol;Acc:HGNC:14435]
16. PRKG2 ENSGALG00000010909 1 1 - - - - - 1.000 - - - - protein kinase cGMP-dependent 2 [Source:HGNC Symbol;Acc:HGNC:9416]
17. C20orf85 ENSGALG00000027484 3 1 - - - - - - - - - 1.000 chromosome 20 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:16216]
18. UST ENSGALG00000012345 7 1 - - 1.000 - - - - - - - uronyl 2-sulfotransferase [Source:HGNC Symbol;Acc:HGNC:17223]
19. MTMR7 13 1 - - - - - - - - - 1.000 myotubularin related protein 7, transcript variant X1
20. TRIM25 ENSGALG00000003144 12 1 - - - - - 1.000 - - - - Gallus gallus tripartite motif containing 25 (TRIM25), mRNA. [Source:RefSeq mRNA;Acc:NM_001318458]
21. LRRC58 ENSGALG00000033186 15 1 - - - - - - - - - 1.000 leucine rich repeat containing 58 [Source:HGNC Symbol;Acc:HGNC:26968]
22. PPP1R1B ENSGALG00000044406 6 1 - - - - - 1.000 - - - - protein phosphatase 1 regulatory inhibitor subunit 1B [Source:HGNC Symbol;Acc:HGNC:9287]
23. CSF2RA ENSGALG00000016693 5 1 - - 1.000 - - - - - - - colony stimulating factor 2 receptor alpha subunit [Source:NCBI gene;Acc:418666]
24. MAGI1 ENSGALG00000007431 23 1 - - - - - 1.000 - - - - membrane associated guanylate kinase, WW and PDZ domain containing 1 [Source:HGNC Symbol;Acc:HGNC:946]
25. LPP ENSGALG00000007337 18 1 - - - - - 1.000 - - - - LIM domain containing preferred translocation partner in lipoma [Source:NCBI gene;Acc:429148]
26. GBE ENSGALG00000011859, ENSGALG00000028016 2 1 - - - - - 1.000 - - - - eye-globin, transcript variant X3
27. MGAT4C ENSGALG00000000225, ENSGALG00000028360 358 1 - - - - - - - - - 1.000 MGAT4 family member C [Source:HGNC Symbol;Acc:HGNC:30871]
28. SLC13A1 ENSGALG00000008874 2 1 - - - - - - - - - 1.000 solute carrier family 13 member 1 [Source:HGNC Symbol;Acc:HGNC:10916]
29. PGBD5 ENSGALG00000011111 1 1 - - - 1.000 - - - - - - piggyBac transposable element derived 5 [Source:HGNC Symbol;Acc:HGNC:19405]
30. GPR65 ENSGALG00000010595 2 1 - - - - - - - - - 1.000 G protein-coupled receptor 65 [Source:HGNC Symbol;Acc:HGNC:4517]
31. RHBDF2 ENSGALG00000001943 1 1 - - - - - 1.000 - - - - rhomboid 5 homolog 2 [Source:HGNC Symbol;Acc:HGNC:20788]
32. LTC4S ENSGALG00000021275 1 1 - - 1.000 - - - - - - - leukotriene C4 synthase [Source:HGNC Symbol;Acc:HGNC:6719]
33. DNMBP ENSGALG00000007304 4 1 - - - - - 1.000 - - - - dynamin binding protein
34. AK4 ENSGALG00000011035 9 1 - - - - - 1.000 - - - - adenylate kinase 4 [Source:HGNC Symbol;Acc:HGNC:363]
35. ATP6V0D1 ENSGALG00000002237 13 1 - - - - - - - - - 1.000 ATPase H+ transporting V0 subunit d1 [Source:NCBI gene;Acc:415674]
36. ADMP ENSGALG00000037408 24 1 - - - 1.000 - - - - - - anti-dorsalizing morphogenetic protein [Source:NCBI gene;Acc:395622]
37. ENSGALG00000024292 ENSGALG00000024292 2 1 - - 1.000 - - - - - - -
38. CNTN6 ENSGALG00000007927 1 1 - - 1.000 - - - - - - - contactin 6 [Source:HGNC Symbol;Acc:HGNC:2176]
39. PDE11A ENSGALG00000042374 1 1 - - 1.000 - - - - - - - phosphodiesterase 11A
40. gga-mir-1801 ENSGALG00000025241 13 1 - - - - - - - - - 1.000 gga-mir-1801 [Source:miRBase;Acc:MI0007545]
41. NME4 ENSGALG00000002688 1 1 - - - - - 1.000 - - - - NME/NM23 nucleoside diphosphate kinase 4 [Source:NCBI gene;Acc:395915]
42. KATNAL2 ENSGALG00000041882 1 1 - - - - - 1.000 - - - - katanin catalytic subunit A1 like 2 [Source:HGNC Symbol;Acc:HGNC:25387]
43. AFTPH ENSGALG00000008828 21 1 - - - - - 1.000 - - - - aftiphilin [Source:HGNC Symbol;Acc:HGNC:25951]
44. P2RY1 ENSGALG00000010357 11 1 - - - 1.000 - - - - - - purinergic receptor P2Y1 [Source:NCBI gene;Acc:396275]
45. VPS37D 3 1 - - - - - 1.000 - - - - VPS37D, ESCRT-I subunit
46. HTR5A ENSGALG00000006362 1 1 - - - 1.000 - - - - - - 5-hydroxytryptamine receptor 5A [Source:HGNC Symbol;Acc:HGNC:5300]
47. FGA ENSGALG00000009266 291 1 - - - - - - - - - 1.000 fibrinogen alpha chain [Source:NCBI gene;Acc:396307]
48. PPP1R12B ENSGALG00000000336 16 1 - - - - - 1.000 - - - - protein phosphatase 1 regulatory subunit 12B [Source:NCBI gene;Acc:395478]
49. KDM1B ENSGALG00000012685 11 1 - - 1.000 - - - - - - - lysine demethylase 1B [Source:HGNC Symbol;Acc:HGNC:21577]
50. IL17REL ENSGALG00000008554 5 1 - - 1.000 - - - - - - - interleukin 17 receptor E like [Source:HGNC Symbol;Acc:HGNC:33808]
51. ENTPD1 ENSGALG00000007078 5 1 - - 1.000 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 1 [Source:NCBI gene;Acc:423826]
52. TLR7 ENSGALG00000016590 6 1 - - 1.000 - - - - - - - toll like receptor 7 [Source:NCBI gene;Acc:418638]
53. CASP18 ENSGALG00000008346 23 1 - - 1.000 - - - - - - - initiator caspase [Source:NCBI gene;Acc:693266]
54. TMEM163 ENSGALG00000012190 72 1 - - - - - 1.000 - - - - transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
55. COQ2 ENSGALG00000041294 25 1 - - - 1.000 - - - - - - coenzyme Q2, polyprenyltransferase [Source:HGNC Symbol;Acc:HGNC:25223]
56. ENSGALG00000013079 ENSGALG00000013079 12 1 - - - - - 1.000 - - - -
57. gga-mir-133a-2 ENSGALG00000018293 1 1 - - 1.000 - - - - - - - gga-mir-133a-2 [Source:miRBase;Acc:MI0001248]
58. SNORA24 SNORA24 2 1 - - - - - 1.000 - - - -
59. PCDH7 ENSGALG00000033883 6 1 - - - - - - - - - 1.000 protocadherin 7 [Source:HGNC Symbol;Acc:HGNC:8659]
60. LY96 ENSGALG00000032701 18 1 - - 1.000 - - - - - - - lymphocyte antigen 96 [Source:HGNC Symbol;Acc:HGNC:17156]
61. SLC22A7 ENSGALG00000001661 9 1 - - 1.000 - - - - - - - solute carrier family 22 member 7 [Source:NCBI gene;Acc:416712]
62. C9orf152 C9orf152 3 1 - - 1.000 - - - - - - -
63. ENSGALG00000014888 ENSGALG00000014888 3 1 - - 1.000 - - - - - - -
64. ENPP4 ENSGALG00000016708 18 1 - - - - - 1.000 - - - - ectonucleotide pyrophosphatase/phosphodiesterase 4 [Source:NCBI gene;Acc:422055]
65. PABPN1L ENSGALG00000006242 3 1 - - - - - 1.000 - - - - poly(A) binding protein nuclear 1 like, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:37237]
66. GAMT ENSGALG00000040182 5 1 - - - - - 1.000 - - - - guanidinoacetate N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4136]
67. RIT2 ENSGALG00000033353 3 1 - - 1.000 - - - - - - - Ras like without CAAX 2 [Source:HGNC Symbol;Acc:HGNC:10017]
68. WDR41 ENSGALG00000004350 16 1 - - - - - 1.000 - - - - WD repeat domain 41 [Source:HGNC Symbol;Acc:HGNC:25601]
69. SLC26A6 ENSGALG00000026089 3 1 - - - - - 1.000 - - - - solute carrier family 26 member 6 [Source:NCBI gene;Acc:416012]
70. PLD4 ENSGALG00000011646 0 1 - - - 1.000 - - - - - - phospholipase D family member 4 [Source:HGNC Symbol;Acc:HGNC:23792]
71. ENSGALG00000012382 ENSGALG00000012382 10 1 - - 1.000 - - - - - - -
72. AATK ENSGALG00000006901 1 1 - - - - - 1.000 - - - - apoptosis associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:21]
73. INHBB ENSGALG00000028770 2 1 - - - 1.000 - - - - - - inhibin subunit beta B [Source:NCBI gene;Acc:396126]
74. C1orf170 C1orf170 7 1 - - - - - - - - - 1.000
75. MFSD6 ENSGALG00000041884 1 1 - - - - - 1.000 - - - - major facilitator superfamily domain containing 6 [Source:HGNC Symbol;Acc:HGNC:24711]
76. PPM1F ENSGALG00000039121 26 1 - - - - - 1.000 - - - - protein phosphatase, Mg2+/Mn2+ dependent 1F [Source:HGNC Symbol;Acc:HGNC:19388]
77. STRA8 ENSGALG00000011722 4 1 - - - - - 1.000 - - - - stimulated by retinoic acid 8 [Source:HGNC Symbol;Acc:HGNC:30653]
78. PLEKHF1 ENSGALG00000004474 8 1 - - - - - - - - - 1.000 pleckstrin homology and FYVE domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20764]
79. ATG7 ENSGALG00000004932 8 1 - - - - - - - - - 1.000 autophagy related 7 [Source:NCBI gene;Acc:415961]
80. DLGAP1 ENSGALG00000014793 1 1 - - 1.000 - - - - - - - DLG associated protein 1 [Source:HGNC Symbol;Acc:HGNC:2905]
81. MNOC MNOC 1 1 - - - - - 1.000 - - - -
82. ARHGAP22 ENSGALG00000006137 4 1 - - - - - - - - - 1.000 Rho GTPase activating protein 22, transcript variant X3
83. SIX6 ENSGALG00000020359 4 1 - - - - - - - - - 1.000 SIX homeobox 6 [Source:NCBI gene;Acc:395843]
84. PRUNE2 ENSGALG00000015167 37 1 - - - 1.000 - - - - - - prune homolog 2, transcript variant X5
85. USH1G ENSGALG00000038769 4 1 - - - 1.000 - - - - - - USH1 protein network component sans [Source:HGNC Symbol;Acc:HGNC:16356]
86. ENSGALG00000010376 ENSGALG00000010376 1 1 - - 1.000 - - - - - - -
87. VWA3A 6 1 - - - 1.000 - - - - - - von Willebrand factor A domain containing 3A, transcript variant X4
88. LICOS LICOS 13 1 - - - 1.000 - - - - - -
89. C1H7ORF60 C1H7ORF60 3 1 - - - - - 1.000 - - - -
90. CDHR5 CDHR5 1 1 - - - 1.000 - - - - - -
91. TBX15 0 1 - - - - - 1.000 - - - - T-box 15
92. FAM160A2 ENSGALG00000003416 23 1 - - - - - 1.000 - - - - family with sequence similarity 160 member A2 [Source:HGNC Symbol;Acc:HGNC:25378]
93. JAKMIP3 ENSGALG00000010486 2 1 - - - - - - - - - 1.000 Janus kinase and microtubule interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23523]
94. VSTM2A ENSGALG00000041764 2 1 - - - - - 1.000 - - - - V-set and transmembrane domain containing 2A [Source:HGNC Symbol;Acc:HGNC:28499]
95. ENSGALG00000026342 ENSGALG00000026342 1 1 - - 1.000 - - - - - - -
96. PSTPIP1 ENSGALG00000002786 9 1 - - - - - 1.000 - - - - proline-serine-threonine phosphatase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9580]
97. DSCAML1 ENSGALG00000007314 1 1 - - - - - 1.000 - - - - DS cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
98. VLDL VLDL 13 1 - - - 1.000 - - - - - -
99. ENSGALG00000021682 ENSGALG00000021682 0 1 - - - - - 1.000 - - - -
100. NKAIN4 ENSGALG00000005774 10 1 - - - - - - - - - 1.000 sodium/potassium transporting ATPase interacting 4 [Source:HGNC Symbol;Acc:HGNC:16191]

There are 202 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA