Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LBR

Gene Name Gene ID Reads Annotation
LBR 6686 lamin B receptor, transcript variant X4











Genes with expression patterns similar to LBR

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LBR 6686 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 lamin B receptor, transcript variant X4
2. SHMT1 ENSGALG00000005046 1430 1.648 - - 0.891 - - - 0.757 - - - serine hydroxymethyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10850]
3. MIB1 ENSGALG00000014974 3583 1.625 - - 0.881 - - - - 0.744 - - mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
4. TRAF3IP1 ENSGALG00000004236 7094 1.624 - - 0.912 - - - - 0.712 - - TRAF3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:17861]
5. BTBD9 ENSGALG00000010131 1870 1.622 - - 0.868 - - - - 0.754 - - BTB domain containing 9 [Source:NCBI gene;Acc:421429]
6. ZC3H11A ENSGALG00000000541 2712 1.604 0.704 - 0.900 - - - - - - - zinc finger CCCH-type containing 11A [Source:NCBI gene;Acc:421172]
7. ABHD13 ENSGALG00000016853 4975 1.602 - - 0.860 - - - - 0.742 - - abhydrolase domain containing 13 [Source:NCBI gene;Acc:418763]
8. SPCS1 ENSGALG00000001655 7718 1.572 - - 0.858 - - - - 0.714 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
9. MAEA ENSGALG00000013310 13230 1.57 - - 0.842 - - - - 0.728 - - macrophage erythroblast attacher [Source:NCBI gene;Acc:426024]
10. PRKACB ENSGALG00000028530 12506 1.563 - - 0.799 - - - - 0.764 - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
11. POMP ENSGALG00000017090 5504 1.559 - - 0.762 - - - - 0.797 - - proteasome maturation protein [Source:HGNC Symbol;Acc:HGNC:20330]
12. PICK1 ENSGALG00000041823 3843 1.554 - - 0.830 - - - - 0.724 - - protein interacting with PRKCA 1 [Source:HGNC Symbol;Acc:HGNC:9394]
13. HINT3 ENSGALG00000044342 5674 1.549 - - 0.820 - - - - 0.729 - - histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:HGNC:18468]
14. VTA1 ENSGALG00000013810 4998 1.501 - - 0.706 - - - - 0.795 - - vesicle trafficking 1 [Source:HGNC Symbol;Acc:HGNC:20954]
15. SPDL1 ENSGALG00000001942 4403 1.5 - - 0.787 - - - - 0.713 - - spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
16. PHF3 ENSGALG00000016267 4148 1.483 0.724 - 0.759 - - - - - - - PHD finger protein 3 [Source:HGNC Symbol;Acc:HGNC:8921]
17. PSMD13 ENSGALG00000043684 14720 1.459 - - 0.718 - - - - 0.741 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
18. YBX1 ENSGALG00000004848 20992 1.454 0.707 - 0.747 - - - - - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
19. RSRC1 ENSGALG00000009669 5829 1.442 - - 0.738 - - - - 0.704 - - arginine and serine rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24152]
20. ARHGAP5 ENSGALG00000009992 3485 1.429 0.706 - 0.723 - - - - - - - Rho GTPase activating protein 5 [Source:HGNC Symbol;Acc:HGNC:675]
21. CREB3L2 ENSGALG00000012877 2515 1.418 0.715 - 0.703 - - - - - - - cAMP responsive element binding protein 3 like 2 [Source:HGNC Symbol;Acc:HGNC:23720]
22. ADI1 ENSGALG00000025796 8636 1.417 - - - - - - 0.705 0.712 - - acireductone dioxygenase 1 [Source:NCBI gene;Acc:421918]
23. NAP1L1 ENSGALG00000010238 14506 1.416 0.711 - - - - - - - - 0.705 nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
24. PCYT1B 190 0.972 - - 0.972 - - - - - - - phosphate cytidylyltransferase 1, choline, beta, transcript variant X4
25. TFAP2C ENSGALG00000007690 768 0.96 - - 0.960 - - - - - - - transcription factor AP-2 gamma [Source:HGNC Symbol;Acc:HGNC:11744]
26. GGT7 ENSGALG00000001062 476 0.959 - - 0.959 - - - - - - - gamma-glutamyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4259]
27. BBX ENSGALG00000015353 1281 0.955 - - 0.955 - - - - - - - BBX, HMG-box containing [Source:HGNC Symbol;Acc:HGNC:14422]
28. GTF2H2 ENSGALG00000002399 2361 0.953 - - 0.953 - - - - - - - general transcription factor IIH subunit 2, transcript variant X2
29. PCDH17 ENSGALG00000016941 1006 0.952 - - 0.952 - - - - - - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
30. WHSC1 1712 0.951 - - 0.951 - - - - - - - Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
31. SMARCAD1 ENSGALG00000037339 149 0.95 - - 0.950 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
32. RQCD1 RQCD1 110 0.95 - - 0.950 - - - - - - -
33. SZT2 ENSGALG00000028561 255 0.95 - - 0.950 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
34. TDRD6 48 0.95 - - 0.950 - - - - - - - tudor domain containing 6
35. ITGB4 ENSGALG00000002389 44 0.95 - - 0.950 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
36. MRC2 ENSGALG00000000461 48 0.95 - - 0.950 - - - - - - - mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
37. CDC14B ENSGALG00000012627 110 0.95 - - 0.950 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
38. ENSGALG00000028964 ENSGALG00000028964 46 0.95 - - 0.950 - - - - - - -
39. MED12 ENSGALG00000036322 814 0.949 - - 0.949 - - - - - - - mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
40. ATF7IP ENSGALG00000011814 1571 0.949 - - 0.949 - - - - - - - activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
41. CLEC16A ENSGALG00000007167 66 0.949 - - 0.949 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
42. NXPE3 ENSGALG00000015344 111 0.949 - - 0.949 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
43. ENSGALG00000020103 ENSGALG00000020103 64 0.949 - - 0.949 - - - - - - -
44. UEVLD ENSGALG00000006342 164 0.948 - - 0.948 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
45. TRIM13 ENSGALG00000017011 92 0.948 - - 0.948 - - - - - - - tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
46. ENSGALG00000004703 ENSGALG00000004703 112 0.948 - - 0.948 - - - - - - -
47. AKAP10 ENSGALG00000004679 103 0.948 - - 0.948 - - - - - - - A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
48. OSGIN2 ENSGALG00000042840 83 0.948 - - 0.948 - - - - - - - oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]
49. F2R ENSGALG00000014983 106 0.948 - - 0.948 - - - - - - - coagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]
50. ENSGALG00000002020 ENSGALG00000002020 183 0.947 - - 0.947 - - - - - - -
51. ABCC3 ENSGALG00000007522 340 0.947 - - 0.947 - - - - - - - ATP binding cassette subfamily C member 3, transcript variant X5
52. GFER ENSGALG00000005579 1367 0.947 - - 0.947 - - - - - - - growth factor, augmenter of liver regeneration [Source:HGNC Symbol;Acc:HGNC:4236]
53. SLC3A1 ENSGALG00000009973 608 0.947 - - 0.947 - - - - - - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
54. TTPAL ENSGALG00000004244 2734 0.947 - - 0.947 - - - - - - - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
55. SNN ENSGALG00000028876 1687 0.947 - - 0.947 - - - - - - - stannin [Source:NCBI gene;Acc:416429]
56. U4 U4 69 0.947 - - 0.947 - - - - - - -
57. PTDSS2 ENSGALG00000004300 682 0.947 - - 0.947 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
58. L3MBTL3 ENSGALG00000034030 113 0.947 - - 0.947 - - - - - - - L3MBTL3, histone methyl-lysine binding protein [Source:HGNC Symbol;Acc:HGNC:23035]
59. TOP2A ENSGALG00000003922 7726 0.946 - - 0.946 - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
60. FBXL5 ENSGALG00000014510 245 0.946 - - 0.946 - - - - - - - F-box and leucine rich repeat protein 5 [Source:HGNC Symbol;Acc:HGNC:13602]
61. RAD54L2 ENSGALG00000003243 187 0.945 - - 0.945 - - - - - - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
62. TCTN2 ENSGALG00000023683 3596 0.944 - - 0.944 - - - - - - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
63. TUBGCP3 ENSGALG00000016836 332 0.944 - - 0.944 - - - - - - - tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
64. DBN1 ENSGALG00000033405 216 0.944 - - 0.944 - - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
65. CHALK5 CHALK5 1351 0.944 - - 0.944 - - - - - - -
66. ITM2B ENSGALG00000016996 1112 0.943 - - 0.943 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
67. SETD1B ENSGALG00000004324 2897 0.943 - - 0.943 - - - - - - - SET domain containing 1B [Source:NCBI gene;Acc:416851]
68. GCC2 ENSGALG00000016806 1085 0.943 - - 0.943 - - - - - - - GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
69. KCTD3 ENSGALG00000009678 335 0.942 - - 0.942 - - - - - - - potassium channel tetramerization domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21305]
70. LRRC42 ENSGALG00000010743 384 0.942 - - 0.942 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
71. ATP10D ENSGALG00000014192 94 0.942 - - 0.942 - - - - - - - ATPase phospholipid transporting 10D (putative) [Source:HGNC Symbol;Acc:HGNC:13549]
72. RPS6KB1 ENSGALG00000005198 169 0.942 - - 0.942 - - - - - - - ribosomal protein S6 kinase B1 [Source:NCBI gene;Acc:417637]
73. SOBP ENSGALG00000043047 147 0.94 - - 0.940 - - - - - - - sine oculis binding protein homolog [Source:NCBI gene;Acc:421775]
74. SLK ENSGALG00000008318 2220 0.94 - - 0.940 - - - - - - - STE20 like kinase [Source:HGNC Symbol;Acc:HGNC:11088]
75. CHAMP1 ENSGALG00000016813 508 0.94 - - 0.940 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
76. PRUNE PRUNE 452 0.939 - - 0.939 - - - - - - -
77. ADK ENSGALG00000005057 199 0.939 - - 0.939 - - - - - - - adenosine kinase [Source:NCBI gene;Acc:423735]
78. BBS5 ENSGALG00000009846 344 0.939 - - 0.939 - - - - - - - Bardet-Biedl syndrome 5 [Source:NCBI gene;Acc:424165]
79. RALGDS ENSGALG00000003412 4478 0.938 - - 0.938 - - - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
80. IFT81 ENSGALG00000003854 2534 0.936 - - 0.936 - - - - - - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
81. NGF ENSGALG00000002556 122 0.936 - - 0.936 - - - - - - - nerve growth factor [Source:NCBI gene;Acc:396466]
82. DCP1B 1306 0.935 - - 0.935 - - - - - - - decapping mRNA 1B
83. LRRC71 ENSGALG00000027351 695 0.935 - - 0.935 - - - - - - - leucine rich repeat containing 71 [Source:HGNC Symbol;Acc:HGNC:26556]
84. ABCE1 ENSGALG00000009961 958 0.935 - - 0.935 - - - - - - - ATP binding cassette subfamily E member 1 [Source:NCBI gene;Acc:422462]
85. MLLT3 ENSGALG00000015078 502 0.934 - - 0.934 - - - - - - - MLLT3, super elongation complex subunit [Source:HGNC Symbol;Acc:HGNC:7136]
86. ATP8B4 ENSGALG00000002326 456 0.933 - - 0.933 - - - - - - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
87. ENSGALG00000008689 ENSGALG00000008689 232 0.932 - - 0.932 - - - - - - -
88. NACAD 679 0.931 - - 0.931 - - - - - - - NAC alpha domain containing, transcript variant X1
89. SMOC2 ENSGALG00000011205 340 0.93 - - 0.930 - - - - - - - SPARC related modular calcium binding 2 [Source:HGNC Symbol;Acc:HGNC:20323]
90. FAM134C 860 0.93 - - 0.930 - - - - - - - family with sequence similarity 134 member C
91. CGNL1 ENSGALG00000004294 1177 0.929 - - 0.929 - - - - - - - cingulin like 1 [Source:HGNC Symbol;Acc:HGNC:25931]
92. SENP6 ENSGALG00000015901 8013 0.929 - - 0.929 - - - - - - - SUMO specific peptidase 6 [Source:HGNC Symbol;Acc:HGNC:20944]
93. GDPD4 ENSGALG00000000690 824 0.929 - - 0.929 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
94. URM1 ENSGALG00000004971 17880 0.928 - - 0.928 - - - - - - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
95. AASDHPPT ENSGALG00000027981 1017 0.928 - - 0.928 - - - - - - - aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]
96. BTG1L ENSGALG00000004676 2293 0.926 - - 0.926 - - - - - - - protein BTG1-like
97. TMEM242 ENSGALG00000013689 377 0.926 - - 0.926 - - - - - - - transmembrane protein 242 [Source:HGNC Symbol;Acc:HGNC:17206]
98. WDR92 ENSGALG00000008760 3934 0.925 - - 0.925 - - - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
99. SURF6 ENSGALG00000038413 11178 0.924 - - 0.924 - - - - - - - surfeit 6 [Source:NCBI gene;Acc:417160]
100. APTX ENSGALG00000001954 692 0.923 - - 0.923 - - - - - - - aprataxin [Source:NCBI gene;Acc:395173]

There are 611 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA