Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for KDM5B

Gene Name Gene ID Reads Annotation
KDM5B ENSGALG00000038948 50645 lysine demethylase 5B [Source:NCBI gene;Acc:421168]











Genes with expression patterns similar to KDM5B

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. KDM5B ENSGALG00000038948 50645 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 lysine demethylase 5B [Source:NCBI gene;Acc:421168]
2. MRPL20 ENSGALG00000001542 28764 2.315 - - - - 0.768 0.726 0.821 - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
3. TUBB2C TUBB2C 44249 2.312 - - - - 0.749 0.733 0.830 - - -
4. SRSF6 ENSGALG00000000990 12424 1.709 - - - - 0.825 - 0.884 - - - serine and arginine rich splicing factor 6 [Source:NCBI gene;Acc:419116]
5. TLK1 ENSGALG00000009569 5446 1.685 - - - - 0.849 - 0.836 - - - tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
6. CDR2L ENSGALG00000026295 4142 1.661 - - - - 0.872 - 0.789 - - - cerebellar degeneration related protein 2 like [Source:HGNC Symbol;Acc:HGNC:29999]
7. PSMD12 ENSGALG00000026225 17473 1.646 - - - - 0.802 - 0.844 - - - proteasome 26S subunit, non-ATPase 12 [Source:NCBI gene;Acc:417425]
8. RANBP1 ENSGALG00000002107 17715 1.642 - - - - 0.771 - 0.871 - - - RAN binding protein 1 [Source:NCBI gene;Acc:416787]
9. TMEM167A ENSGALG00000027332 13862 1.639 - - - - 0.857 - 0.782 - - - transmembrane protein 167A [Source:NCBI gene;Acc:770790]
10. NDUFB4 ENSGALG00000027688 8951 1.637 - - - - 0.837 - 0.800 - - - NADH:ubiquinone oxidoreductase subunit B4 [Source:HGNC Symbol;Acc:HGNC:7699]
11. HNRNPLL ENSGALG00000008504 14719 1.635 - - - - 0.787 - 0.848 - - - heterogeneous nuclear ribonucleoprotein L like [Source:NCBI gene;Acc:416702]
12. BUB1 ENSGALG00000008233 11536 1.633 - - - - 0.784 - 0.849 - - - BUB1 mitotic checkpoint serine/threonine kinase [Source:NCBI gene;Acc:421226]
13. COPB2 ENSGALG00000005357 15208 1.631 - - - - 0.810 - 0.821 - - - coatomer protein complex subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:2232]
14. MOCS2 ENSGALG00000014906 4974 1.63 - - - - 0.862 - 0.768 - - - molybdenum cofactor synthesis 2 [Source:HGNC Symbol;Acc:HGNC:7193]
15. GMNN ENSGALG00000013626 15838 1.624 - - - - 0.764 - 0.860 - - - geminin, DNA replication inhibitor [Source:NCBI gene;Acc:421004]
16. ADSL ENSGALG00000012034 10280 1.621 - - - - 0.870 - 0.751 - - - adenylosuccinate lyase [Source:NCBI gene;Acc:396540]
17. GPALPP1 ENSGALG00000031567 4221 1.6 - - - - 0.863 - 0.737 - - - GPALPP motifs containing 1 [Source:NCBI gene;Acc:418842]
18. EIF2B EIF2B 28702 1.593 - - - - - 0.742 0.851 - - -
19. SMS ENSGALG00000016379 11607 1.59 - - - - 0.838 - 0.752 - - - spermine synthase [Source:NCBI gene;Acc:418602]
20. CKAP5 ENSGALG00000008325 8494 1.582 - - - - 0.870 - 0.712 - - - cytoskeleton associated protein 5 [Source:NCBI gene;Acc:423190]
21. MPPED1 ENSGALG00000014186 5726 1.579 - - - - 0.868 - 0.711 - - - metallophosphoesterase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1306]
22. FAM18B1 ENSGALG00000001335 5177 1.578 - - - - 0.859 - 0.719 - - - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
23. AIP ENSGALG00000040247 4166 1.576 - - - - 0.861 - 0.715 - - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
24. BRP44 BRP44 17093 1.576 - - - - 0.813 - 0.763 - - -
25. RAB11B ENSGALG00000000613 20696 1.574 - - - - 0.762 - 0.812 - - - RAB11B, member RAS oncogene family [Source:NCBI gene;Acc:420063]
26. PAXIP1 ENSGALG00000036064 3120 1.569 - - - - 0.860 - 0.709 - - - PAX interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:8624]
27. MAP2K4 ENSGALG00000032178 5982 1.569 - - - - 0.838 - 0.731 - - - mitogen-activated protein kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6844]
28. WSB2 ENSGALG00000008151 13246 1.566 - - - - 0.854 - 0.712 - - - WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
29. KDM1A ENSGALG00000033469 20632 1.553 - - - - 0.846 - 0.707 - - - lysine demethylase 1A [Source:HGNC Symbol;Acc:HGNC:29079]
30. ZNF593 ENSGALG00000000542 79105 1.543 - - - - 0.744 - 0.799 - - - zinc finger protein 593 [Source:NCBI gene;Acc:419549]
31. PDIA6 ENSGALG00000016447 51308 1.543 - - - - - 0.746 0.797 - - - protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
32. LSM6 ENSGALG00000009985 18582 1.542 - - - - 0.791 - 0.751 - - - LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:422466]
33. MRPL37 ENSGALG00000010761 10596 1.535 - - - - 0.808 - 0.727 - - - mitochondrial ribosomal protein L37 [Source:NCBI gene;Acc:772313]
34. MTA1 ENSGALG00000002803 11572 1.532 - - - - 0.818 - 0.714 - - - metastasis associated 1 [Source:NCBI gene;Acc:429060]
35. FCF1 ENSGALG00000010275 24928 1.524 - - - - - 0.725 0.799 - - - FCF1, rRNA-processing protein [Source:HGNC Symbol;Acc:HGNC:20220]
36. TPRKB ENSGALG00000013018 8687 1.518 - - - - - 0.742 0.776 - - - TP53RK binding protein [Source:HGNC Symbol;Acc:HGNC:24259]
37. CYC CYC 8740 1.515 - - - - - 0.769 0.746 - - -
38. GOLGA7 ENSGALG00000003483 26525 1.501 - - - - 0.778 - 0.723 - - - golgin A7 [Source:NCBI gene;Acc:426787]
39. LLPH ENSGALG00000019358 20976 1.494 - - - - - 0.727 0.767 - - - LLP homolog, long-term synaptic facilitation [Source:NCBI gene;Acc:771027]
40. TMED2 ENSGALG00000003307 20704 1.491 - - - - 0.769 - 0.722 - - - transmembrane p24 trafficking protein 2 [Source:NCBI gene;Acc:416821]
41. AHSA1 ENSGALG00000010463 15252 1.466 - - - - - 0.731 0.735 - - - activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]
42. VPS29 ENSGALG00000004529 22509 1.458 - - - - 0.705 - 0.753 - - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
43. ATP1A1 ENSGALG00000032247 15898 1.424 - - - - - - 0.715 - - 0.709 ATPase Na+/K+ transporting subunit alpha 1 [Source:NCBI gene;Acc:396530]
44. SLC25A17 ENSGALG00000012013 13948 0.921 - - - - - - 0.921 - - - solute carrier family 25 member 17 [Source:HGNC Symbol;Acc:HGNC:10987]
45. SSU72 ENSGALG00000001489 7589 0.908 - - - - - - 0.908 - - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:419410]
46. CASP3 ENSGALG00000010638 11572 0.906 - - - - - - 0.906 - - - caspase 3 [Source:NCBI gene;Acc:395476]
47. RAD21 ENSGALG00000029523 25658 0.904 - - - - - - 0.904 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
48. SRRM1 ENSGALG00000001283 23820 0.903 - - - - - - 0.903 - - - serine and arginine repetitive matrix 1 [Source:NCBI gene;Acc:428216]
49. MRPL54 ENSGALG00000027611 39450 0.898 - - - - - - 0.898 - - - mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
50. UQCRC2 ENSGALG00000002490 23477 0.896 - - - - - - 0.896 - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
51. PTP4A2 ENSGALG00000003265 24826 0.896 - - - - - - 0.896 - - - protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
52. EIF4A2 ENSGALG00000008684 58507 0.895 - - - - - - 0.895 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
53. CPSF6 ENSGALG00000019355 7634 0.894 - - - - - - 0.894 - - - cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
54. MCTS1 ENSGALG00000008517 27514 0.893 - - - - - - 0.893 - - - MCTS1, re-initiation and release factor [Source:NCBI gene;Acc:422363]
55. SLC25A3 ENSGALG00000011514 62606 0.892 - - - - - - 0.892 - - - solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
56. LEPROT ENSGALG00000011047 7132 0.888 - - - - - - 0.888 - - - leptin receptor overlapping transcript [Source:NCBI gene;Acc:424699]
57. TMPO ENSGALG00000011504 14454 0.887 - - - - - - 0.887 - - - thymopoietin [Source:NCBI gene;Acc:417923]
58. ARPC1A ENSGALG00000004693 11583 0.885 - - - - - - 0.885 - - - actin related protein 2/3 complex subunit 1A [Source:NCBI gene;Acc:770269]
59. RCN2 ENSGALG00000039284 17848 0.885 - - - - - - 0.885 - - - reticulocalbin 2 [Source:NCBI gene;Acc:415350]
60. MAP3K13 ENSGALG00000006655 632 0.884 - - - - 0.884 - - - - - mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
61. PSMA2 ENSGALG00000039387 23620 0.883 - - - - - - 0.883 - - - proteasome subunit alpha 2 [Source:NCBI gene;Acc:420772]
62. CSNK1E ENSGALG00000032257 2165 0.882 - - - - 0.882 - - - - - casein kinase 1 epsilon [Source:NCBI gene;Acc:378891]
63. TMEM65 ENSGALG00000037371 776 0.882 - - - - 0.882 - - - - - transmembrane protein 65 [Source:NCBI gene;Acc:428387]
64. PCIF1 ENSGALG00000023547 867 0.882 - - - - 0.882 - - - - - PDX1 C-terminal inhibiting factor 1 [Source:HGNC Symbol;Acc:HGNC:16200]
65. PARP1 ENSGALG00000009228 39433 0.88 - - - - - - 0.880 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
66. ENSGALG00000005720 ENSGALG00000005720 1666 0.879 - - - - 0.879 - - - - -
67. MXD4 ENSGALG00000015688 1472 0.878 - - - - 0.878 - - - - - MAX dimerization protein 4 [Source:NCBI gene;Acc:422890]
68. NOL12 ENSGALG00000012410 5658 0.878 - - - - 0.878 - - - - - nucleolar protein 12
69. PNRC2 ENSGALG00000004122 19228 0.878 - - - - - - 0.878 - - - proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]
70. UQCRC1 ENSGALG00000005789 23201 0.878 - - - - - - 0.878 - - - ubiquinol-cytochrome c reductase core protein 1 [Source:HGNC Symbol;Acc:HGNC:12585]
71. BRCC3 ENSGALG00000005383 4844 0.878 - - - - 0.878 - - - - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
72. C9orf89 C9orf89 3056 0.878 - - - - 0.878 - - - - -
73. KAT6A ENSGALG00000003641 2631 0.878 - - - - 0.878 - - - - - lysine acetyltransferase 6A [Source:HGNC Symbol;Acc:HGNC:13013]
74. AEN ENSGALG00000044204 2633 0.878 - - - - 0.878 - - - - - apoptosis enhancing nuclease, transcript variant X1
75. RHBDF1 ENSGALG00000007434 2359 0.877 - - - - 0.877 - - - - - rhomboid 5 homolog 1 [Source:HGNC Symbol;Acc:HGNC:20561]
76. CLSPN ENSGALG00000002346 2590 0.876 - - - - 0.876 - - - - - claspin [Source:NCBI gene;Acc:428223]
77. FOCAD ENSGALG00000015071 3677 0.875 - - - - 0.875 - - - - - focadhesin [Source:NCBI gene;Acc:427233]
78. PDXP ENSGALG00000023131 2663 0.875 - - - - 0.875 - - - - - pyridoxal phosphatase [Source:HGNC Symbol;Acc:HGNC:30259]
79. NMT1 ENSGALG00000000857 5770 0.875 - - - - 0.875 - - - - - N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7857]
80. TIMM21 ENSGALG00000013709 3215 0.874 - - - - 0.874 - - - - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
81. LSMD1 LSMD1 2562 0.874 - - - - 0.874 - - - - -
82. TPD52L2 ENSGALG00000004683 13624 0.874 - - - - - - 0.874 - - - tumor protein D52 like 2 [Source:NCBI gene;Acc:419257]
83. MTG1 ENSGALG00000003549 5032 0.874 - - - - 0.874 - - - - - mitochondrial ribosome associated GTPase 1 [Source:NCBI gene;Acc:791224]
84. PIK3CD ENSGALG00000002583 1036 0.874 - - - - 0.874 - - - - - phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta [Source:NCBI gene;Acc:419444]
85. DARS ENSGALG00000012355 2887 0.873 - - - - 0.873 - - - - - aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
86. COPG2 ENSGALG00000008144 4542 0.873 - - - - 0.873 - - - - - coatomer protein complex subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:2237]
87. LFNG ENSGALG00000038515 5178 0.872 - - - - 0.872 - - - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
88. FBXW7 ENSGALG00000010103 5982 0.871 - - - - 0.871 - - - - - F-box and WD repeat domain containing 7 [Source:HGNC Symbol;Acc:HGNC:16712]
89. KDELR2 ENSGALG00000040793 29669 0.871 - - - - - - 0.871 - - - KDEL endoplasmic reticulum protein retention receptor 2 [Source:NCBI gene;Acc:771927]
90. ATP5F1 80590 0.871 - - - - - - 0.871 - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
91. CENPH ENSGALG00000014788 10601 0.871 - - - - - - 0.871 - - - centromere protein H [Source:NCBI gene;Acc:395316]
92. ITPK1 ENSGALG00000034898 4212 0.87 - - - - 0.870 - - - - - inositol-tetrakisphosphate 1-kinase [Source:NCBI gene;Acc:423421]
93. HABP4 ENSGALG00000012628 2894 0.869 - - - - 0.869 - - - - - hyaluronan binding protein 4 [Source:NCBI gene;Acc:395444]
94. RBBP4 ENSGALG00000003522 72455 0.869 - - - - - - 0.869 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
95. RRP9 ENSGALG00000043359 9747 0.868 - - - - - - 0.868 - - - ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]
96. GLB1L2 ENSGALG00000001604 4057 0.868 - - - - 0.868 - - - - - galactosidase beta 1 like 2 [Source:HGNC Symbol;Acc:HGNC:25129]
97. TDRD3 ENSGALG00000016936 3412 0.868 - - - - 0.868 - - - - - tudor domain containing 3 [Source:NCBI gene;Acc:418823]
98. CRIPT ENSGALG00000010014 4311 0.867 - - - - 0.867 - - - - - CXXC repeat containing interactor of PDZ3 domain [Source:NCBI gene;Acc:421412]
99. RPL35 ENSGALG00000035677 252113 0.866 - - - - - - 0.866 - - - ribosomal protein L35 [Source:NCBI gene;Acc:374133]
100. WDR61 ENSGALG00000003221 11352 0.866 - - - - - - 0.866 - - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]

There are 707 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA