Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for Ihh

Gene Name Gene ID Reads Annotation
Ihh ENSMUSG00000006538 57 Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]







Genes with expression patterns similar to Ihh

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Ihh ENSMUSG00000006538 57 6 1.000 1.000 1.000 1.000 1.000 1.000 Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]
2. Nepn ENSMUSG00000038624 1442 2.492 - 0.871 - 0.732 0.889 - nephrocan [Source:MGI Symbol;Acc:MGI:1913900]
3. Gm13824 Gm13824 26 1.706 - - 0.828 0.878 - -
4. Foxa1 ENSMUSG00000035451 548 1.681 - 0.783 - 0.898 - - forkhead box A1 [Source:MGI Symbol;Acc:MGI:1347472]
5. Rfx6 ENSMUSG00000019900 46 1.592 - - 0.874 - 0.718 - regulatory factor X, 6 [Source:MGI Symbol;Acc:MGI:2445208]
6. Folr1 ENSMUSG00000001827 12 1.586 - - 0.873 - 0.713 - folate receptor 1 (adult) [Source:MGI Symbol;Acc:MGI:95568]
7. Phlda2 ENSMUSG00000010760 429 1.523 - - 0.792 0.731 - - pleckstrin homology like domain, family A, member 2 [Source:MGI Symbol;Acc:MGI:1202307]
8. Rbp4 ENSMUSG00000024990 1171 1.406 - 0.702 0.704 - - - retinol binding protein 4, plasma [Source:MGI Symbol;Acc:MGI:97879]
9. Oas1b ENSMUSG00000029605 24 1 1.000 - - - - - 2'-5' oligoadenylate synthetase 1B [Source:MGI Symbol;Acc:MGI:97430]
10. Nkx6-3 ENSMUSG00000063672 20 0.969 - - - 0.969 - - NK6 homeobox 3 [Source:MGI Symbol;Acc:MGI:1921811]
11. Tspan8 ENSMUSG00000034127 107 0.943 - - - - 0.943 - tetraspanin 8 [Source:MGI Symbol;Acc:MGI:2384918]
12. St8sia3 ENSMUSG00000056812 268 0.939 - - - 0.939 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:MGI Symbol;Acc:MGI:106019]
13. Cdx2 ENSMUSG00000029646 39 0.929 - - - - 0.929 - caudal type homeobox 2 [Source:MGI Symbol;Acc:MGI:88361]
14. Gpbar1 ENSMUSG00000064272 7 0.922 - - - - - 0.922 G protein-coupled bile acid receptor 1 [Source:MGI Symbol;Acc:MGI:2653863]
15. Dnaaf1 ENSMUSG00000031831 2 0.922 - - - - - 0.922 dynein, axonemal assembly factor 1 [Source:MGI Symbol;Acc:MGI:1915520]
16. Gm216 Gm216 18 0.922 - - - - - 0.922
17. Fendrr ENSMUSG00000097336 430 0.917 - - 0.917 - - - Foxf1 adjacent non-coding developmental regulatory RNA [Source:MGI Symbol;Acc:MGI:1916040]
18. Enpp1 ENSMUSG00000037370 109 0.916 - - - 0.916 - - ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:MGI Symbol;Acc:MGI:97370]
19. Smim6 ENSMUSG00000075420 6 0.913 - - 0.913 - - - small integral membrane protein 6 [Source:MGI Symbol;Acc:MGI:1915778]
20. Lrfn5 ENSMUSG00000035653 60 0.913 - - 0.913 - - - leucine rich repeat and fibronectin type III domain containing 5 [Source:MGI Symbol;Acc:MGI:2144814]
21. Unc80 ENSMUSG00000055567 16 0.911 - - 0.911 - - - unc-80, NALCN activator [Source:MGI Symbol;Acc:MGI:2652882]
22. Carf ENSMUSG00000026017 38 0.908 - - - 0.908 - - calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]
23. Sfrp5 ENSMUSG00000018822 686 0.905 - - 0.905 - - - secreted frizzled-related sequence protein 5 [Source:MGI Symbol;Acc:MGI:1860298]
24. Akr1c19 ENSMUSG00000071551 132 0.904 - - - - 0.904 - aldo-keto reductase family 1, member C19 [Source:MGI Symbol;Acc:MGI:2653678]
25. Krt8 ENSMUSG00000049382 2446 0.902 - - - 0.902 - - keratin 8 [Source:MGI Symbol;Acc:MGI:96705]
26. Lgals2 ENSMUSG00000043501 95 0.902 - - - - 0.902 - lectin, galactose-binding, soluble 2 [Source:MGI Symbol;Acc:MGI:895068]
27. Tmem51 ENSMUSG00000040616, ENSMUSG00000116465 382 0.897 - - - 0.897 - - transmembrane protein 51 [Source:MGI Symbol;Acc:MGI:2384874]
28. Gstt2 ENSMUSG00000033318 125 0.889 - - - 0.889 - - glutathione S-transferase, theta 2 [Source:MGI Symbol;Acc:MGI:106188]
29. Dusp26 ENSMUSG00000039661 148 0.888 - - - 0.888 - - dual specificity phosphatase 26 (putative) [Source:MGI Symbol;Acc:MGI:1914209]
30. Sorbs3 ENSMUSG00000022091 397 0.888 - - - 0.888 - - sorbin and SH3 domain containing 3 [Source:MGI Symbol;Acc:MGI:700013]
31. Tex16 ENSMUSG00000034555 42 0.887 - - - 0.887 - - testis expressed gene 16 [Source:MGI Symbol;Acc:MGI:1890545]
32. Cysltr1 ENSMUSG00000052821 121 0.887 - - - 0.887 - - cysteinyl leukotriene receptor 1 [Source:MGI Symbol;Acc:MGI:1926218]
33. Smcr8 ENSMUSG00000049323 230 0.884 - - - 0.884 - - Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) [Source:MGI Symbol;Acc:MGI:2444720]
34. Gm22806 ENSMUSG00000064672 11 0.881 0.881 - - - - - predicted gene, 22806 [Source:MGI Symbol;Acc:MGI:5452583]
35. 1600014C23Rik ENSMUSG00000094690 35 0.881 - - - 0.881 - - RIKEN cDNA 1600014C23 gene [Source:MGI Symbol;Acc:MGI:1919490]
36. Cftr ENSMUSG00000041301 43 0.88 - - - - 0.880 - cystic fibrosis transmembrane conductance regulator [Source:MGI Symbol;Acc:MGI:88388]
37. Gm14401 ENSMUSG00000078872 17 0.878 - - - 0.878 - - predicted gene 14401 [Source:MGI Symbol;Acc:MGI:3650075]
38. Nlrp6 ENSMUSG00000038745 18 0.875 - - - 0.875 - - NLR family, pyrin domain containing 6 [Source:MGI Symbol;Acc:MGI:2141990]
39. Cldn23 ENSMUSG00000055976 75 0.875 - - - 0.875 - - claudin 23 [Source:MGI Symbol;Acc:MGI:1919158]
40. Cyp2s1 ENSMUSG00000040703 116 0.875 - - - 0.875 - - cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1921384]
41. H2-Oa ENSMUSG00000024334 12 0.874 - - 0.874 - - - histocompatibility 2, O region alpha locus [Source:MGI Symbol;Acc:MGI:95924]
42. Cckbr ENSMUSG00000030898 19 0.872 - - - 0.872 - - cholecystokinin B receptor [Source:MGI Symbol;Acc:MGI:99479]
43. 4930431F12Rik ENSMUSG00000062496 29 0.871 - - - 0.871 - - RIKEN cDNA 4930431F12 gene [Source:MGI Symbol;Acc:MGI:1923033]
44. 9130230L23Rik ENSMUSG00000054598 47 0.87 - - - 0.870 - - RIKEN cDNA 9130230L23 gene [Source:MGI Symbol;Acc:MGI:3041166]
45. Sptssb ENSMUSG00000043461 113 0.869 - - - 0.869 - - serine palmitoyltransferase, small subunit B [Source:MGI Symbol;Acc:MGI:1913433]
46. Parp9 ENSMUSG00000022906 53 0.867 - - - 0.867 - - poly (ADP-ribose) polymerase family, member 9 [Source:MGI Symbol;Acc:MGI:1933117]
47. Krt20 ENSMUSG00000035775 230 0.866 - - 0.866 - - - keratin 20 [Source:MGI Symbol;Acc:MGI:1914059]
48. Scnn1a ENSMUSG00000030340 83 0.865 - - - 0.865 - - sodium channel, nonvoltage-gated 1 alpha [Source:MGI Symbol;Acc:MGI:101782]
49. Crkl ENSMUSG00000006134 56 0.865 - - - 0.865 - - v-crk avian sarcoma virus CT10 oncogene homolog-like [Source:MGI Symbol;Acc:MGI:104686]
50. Tmem229a ENSMUSG00000048022 46 0.864 - - - 0.864 - - transmembrane protein 229A [Source:MGI Symbol;Acc:MGI:2442812]
51. Gm4890 ENSMUSG00000097174 45 0.864 - - - 0.864 - - predicted gene 4890 [Source:MGI Symbol;Acc:MGI:3779445]
52. Rhpn2 ENSMUSG00000030494 243 0.863 - - - 0.863 - - rhophilin, Rho GTPase binding protein 2 [Source:MGI Symbol;Acc:MGI:1289234]
53. Gm13436 ENSMUSG00000083716 141 0.862 - - - 0.862 - - predicted gene 13436 [Source:MGI Symbol;Acc:MGI:3651005]
54. Opcml ENSMUSG00000062257 231 0.861 - - - 0.861 - - opioid binding protein/cell adhesion molecule-like [Source:MGI Symbol;Acc:MGI:97397]
55. Iqsec2 ENSMUSG00000041115 97 0.86 - - - 0.860 - - IQ motif and Sec7 domain 2 [Source:MGI Symbol;Acc:MGI:3528396]
56. Slc5a5 ENSMUSG00000000792 39 0.86 - - 0.860 - - - solute carrier family 5 (sodium iodide symporter), member 5 [Source:MGI Symbol;Acc:MGI:2149330]
57. Lmo1 ENSMUSG00000036111 350 0.859 - - - 0.859 - - LIM domain only 1 [Source:MGI Symbol;Acc:MGI:102812]
58. Gm11895 ENSMUSG00000084018 124 0.859 - - - 0.859 - - predicted gene 11895 [Source:MGI Symbol;Acc:MGI:3651868]
59. Spink3 Spink3 30 0.856 - - - 0.856 - -
60. Gm17251 ENSMUSG00000090952 115 0.854 - - - 0.854 - - predicted gene, 17251 [Source:MGI Symbol;Acc:MGI:4936885]
61. Actl6a ENSMUSG00000027671 174 0.854 - - - 0.854 - - actin-like 6A [Source:MGI Symbol;Acc:MGI:1861453]
62. Gm26547 ENSMUSG00000097095 181 0.854 - - - 0.854 - - predicted gene, 26547 [Source:MGI Symbol;Acc:MGI:5477041]
63. 4933431E20Rik ENSMUSG00000086968 381 0.854 - - - 0.854 - - RIKEN cDNA 4933431E20 gene [Source:MGI Symbol;Acc:MGI:3584041]
64. Acacb ENSMUSG00000042010 73 0.853 - - - 0.853 - - acetyl-Coenzyme A carboxylase beta [Source:MGI Symbol;Acc:MGI:2140940]
65. Rnf149 ENSMUSG00000048234 240 0.851 - - - 0.851 - - ring finger protein 149 [Source:MGI Symbol;Acc:MGI:2677438]
66. Ffar4 ENSMUSG00000054200 29 0.849 - - - - 0.849 - free fatty acid receptor 4 [Source:MGI Symbol;Acc:MGI:2147577]
67. Hkdc1 ENSMUSG00000020080 23 0.849 - - - - 0.849 - hexokinase domain containing 1 [Source:MGI Symbol;Acc:MGI:2384910]
68. Lyl1 ENSMUSG00000034041 123 0.848 - - - 0.848 - - lymphoblastomic leukemia 1 [Source:MGI Symbol;Acc:MGI:96891]
69. Zdhhc24 ENSMUSG00000006463 295 0.847 - - - 0.847 - - zinc finger, DHHC domain containing 24 [Source:MGI Symbol;Acc:MGI:1917855]
70. Ap1m2 ENSMUSG00000003309 104 0.847 - - - 0.847 - - adaptor protein complex AP-1, mu 2 subunit [Source:MGI Symbol;Acc:MGI:1336974]
71. Oit3 ENSMUSG00000009654 48 0.843 - - - - - 0.843 oncoprotein induced transcript 3 [Source:MGI Symbol;Acc:MGI:1201782]
72. Palm2 ENSMUSG00000090053 57 0.842 - - - 0.842 - - paralemmin 2 [Source:MGI Symbol;Acc:MGI:1934601]
73. 5730596B20Rik ENSMUSG00000056468 173 0.842 - - - 0.842 - - RIKEN cDNA 5730596B20 gene [Source:MGI Symbol;Acc:MGI:1924830]
74. P2ry13 ENSMUSG00000036362 46 0.842 - - - 0.842 - - purinergic receptor P2Y, G-protein coupled 13 [Source:MGI Symbol;Acc:MGI:1921441]
75. Tmprss2 ENSMUSG00000000385 70 0.842 - - 0.842 - - - transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
76. Oit1 ENSMUSG00000021749 8 0.841 - - 0.841 - - - oncoprotein induced transcript 1 [Source:MGI Symbol;Acc:MGI:1201784]
77. AA986860 ENSMUSG00000042510 48 0.84 - - 0.840 - - - expressed sequence AA986860 [Source:MGI Symbol;Acc:MGI:2138143]
78. Gm10248 ENSMUSG00000068680 65 0.838 - - - 0.838 - - predicted gene 10248 [Source:MGI Symbol;Acc:MGI:3641931]
79. Kcnn4 ENSMUSG00000054342 49 0.835 - - - 0.835 - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 [Source:MGI Symbol;Acc:MGI:1277957]
80. Acot2 ENSMUSG00000021226 266 0.834 - - - 0.834 - - acyl-CoA thioesterase 2 [Source:MGI Symbol;Acc:MGI:2159605]
81. Otub2 ENSMUSG00000021203 157 0.831 - - - 0.831 - - OTU domain, ubiquitin aldehyde binding 2 [Source:MGI Symbol;Acc:MGI:1915399]
82. Apitd1 412 0.831 - - - 0.831 - - apoptosis-inducing, TAF9-like domain 1
83. Pdzd4 ENSMUSG00000002006 400 0.83 - - - 0.830 - - PDZ domain containing 4 [Source:MGI Symbol;Acc:MGI:2443483]
84. 4933421O10Rik ENSMUSG00000085037 144 0.83 - - - 0.830 - - RIKEN cDNA 4933421O10 gene [Source:MGI Symbol;Acc:MGI:1918323]
85. Paqr3 ENSMUSG00000055725 34 0.829 - - 0.829 - - - progestin and adipoQ receptor family member III [Source:MGI Symbol;Acc:MGI:2679683]
86. Kcnh2 ENSMUSG00000038319 806 0.829 - - - 0.829 - - potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
87. Gypa ENSMUSG00000051839 214 0.829 - - - 0.829 - - glycophorin A [Source:MGI Symbol;Acc:MGI:95880]
88. Gm13736 ENSMUSG00000082908 67 0.828 - - - 0.828 - - predicted gene 13736 [Source:MGI Symbol;Acc:MGI:3650137]
89. Phox2b ENSMUSG00000012520 407 0.827 - - - 0.827 - - paired-like homeobox 2b [Source:MGI Symbol;Acc:MGI:1100882]
90. 6720401G13Rik 6720401G13Rik 312 0.827 - - - 0.827 - -
91. Gpank1 ENSMUSG00000092417 271 0.826 - - - 0.826 - - G patch domain and ankyrin repeats 1 [Source:MGI Symbol;Acc:MGI:2148975]
92. Mettl22 ENSMUSG00000039345 225 0.825 - - - 0.825 - - methyltransferase like 22 [Source:MGI Symbol;Acc:MGI:2384301]
93. Clic6 ENSMUSG00000022949 78 0.825 - - 0.825 - - - chloride intracellular channel 6 [Source:MGI Symbol;Acc:MGI:2146607]
94. AA987161 AA987161 597 0.824 - - - 0.824 - -
95. Mfsd2b ENSMUSG00000037336 122 0.823 - - - 0.823 - - major facilitator superfamily domain containing 2B [Source:MGI Symbol;Acc:MGI:3583946]
96. Hpx ENSMUSG00000030895 75 0.823 - - - 0.823 - - hemopexin [Source:MGI Symbol;Acc:MGI:105112]
97. Fuca2 ENSMUSG00000019810 864 0.823 - - - 0.823 - - fucosidase, alpha-L- 2, plasma [Source:MGI Symbol;Acc:MGI:1914098]
98. Rin1 ENSMUSG00000024883 588 0.822 - - - 0.822 - - Ras and Rab interactor 1 [Source:MGI Symbol;Acc:MGI:2385695]
99. Ttpal ENSMUSG00000017679 922 0.822 - - - 0.822 - - tocopherol (alpha) transfer protein-like [Source:MGI Symbol;Acc:MGI:1923330]
100. Syce1 ENSMUSG00000025480 13 0.82 - - - - 0.820 - synaptonemal complex central element protein 1 [Source:MGI Symbol;Acc:MGI:1921325]

There are 225 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA