Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for IRX1

Gene Name Gene ID Reads Annotation
IRX1 ENSGALG00000030991 1474 iroquois homeobox 1 [Source:NCBI gene;Acc:374185]











Genes with expression patterns similar to IRX1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. IRX1 ENSGALG00000030991 1474 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 iroquois homeobox 1 [Source:NCBI gene;Acc:374185]
2. HES5 ENSGALG00000001141 6514 3.159 - - - - - 0.786 0.806 - 0.739 0.828 hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
3. ENSGALG00000027373 ENSGALG00000027373 2129 2.959 - - - 0.718 - 0.798 - - 0.711 0.732
4. PTPRZ1 ENSGALG00000040114 3410 2.42 - - - - - 0.918 0.704 - - 0.798 protein tyrosine phosphatase, receptor type Z1 [Source:NCBI gene;Acc:396403]
5. CRABP-I ENSGALG00000003193 67258 2.341 - - - - - 0.856 - - 0.739 0.746 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
6. HES6 ENSGALG00000028415 4830 2.223 - - - - - 0.729 - - 0.703 0.791 hes family bHLH transcription factor 6
7. CSPG5 ENSGALG00000032184 991 2.181 - - - - - 0.755 0.726 - - 0.700 chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
8. ENSGALG00000022967 ENSGALG00000022967 240 1.629 - - - - - 0.852 - - - 0.777
9. MARCKSL1 ENSGALG00000032335 88728 1.599 - - - - - 0.861 - - - 0.738 MARCKS like 1 [Source:NCBI gene;Acc:770764]
10. SRGAP3 ENSGALG00000008378 4331 1.562 - - - - - 0.817 0.745 - - - SLIT-ROBO Rho GTPase activating protein 3 [Source:NCBI gene;Acc:416115]
11. DENND5B 4077 1.559 - - - - - 0.841 0.718 - - - DENN domain containing 5B, transcript variant X1
12. CKB ENSGALG00000011511 2100 1.556 - - - - - 0.777 - - - 0.779 creatine kinase B [Source:NCBI gene;Acc:396248]
13. COL14A1 ENSGALG00000037675 2652 1.541 - - - - - 0.837 0.704 - - - collagen type XIV alpha 1 chain [Source:NCBI gene;Acc:396276]
14. LASP-2 LASP-2 4415 1.537 - - - - - 0.829 0.708 - - -
15. PROCA1 668 1.534 - - - - - 0.789 - - - 0.745 protein interacting with cyclin A1
16. TAGLN3 ENSGALG00000015379 7865 1.527 - - - - - - - - 0.751 0.776 transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
17. ENSGALG00000027002 ENSGALG00000027002 7570 1.508 - - - - - - - - 0.736 0.772
18. ZBTB16 ENSGALG00000038540 5544 1.504 - - - - - 0.789 - - - 0.715 Gallus gallus zinc finger and BTB domain containing 32 (ZBTB32), mRNA. [Source:RefSeq mRNA;Acc:NM_001321488]
19. SLC1A3 ENSGALG00000003582 2283 1.492 - - - - - 0.701 0.791 - - - solute carrier family 1 member 3 [Source:HGNC Symbol;Acc:HGNC:10941]
20. DLL1 ENSGALG00000011182 1613 1.485 - - - - - 0.720 - - - 0.765 delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
21. NHLH1 ENSGALG00000025817 1617 1.485 - - - - - - - - 0.762 0.723 nescient helix-loop-helix 1 [Source:NCBI gene;Acc:373910]
22. PPP1R1C ENSGALG00000008896 378 1.46 - - - - - 0.732 0.728 - - - protein phosphatase 1 regulatory inhibitor subunit 1C [Source:HGNC Symbol;Acc:HGNC:14940]
23. SLC35F1 ENSGALG00000029011 14728 1.443 - - - - - 0.711 - - - 0.732 solute carrier family 35 member F1 [Source:HGNC Symbol;Acc:HGNC:21483]
24. CHGA ENSGALG00000010820 1028 1.429 - - - - - 0.700 0.729 - - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
25. RGS9 ENSGALG00000029610 112 0.998 - - - - - - - 0.998 - - regulator of G protein signaling 9 [Source:HGNC Symbol;Acc:HGNC:10004]
26. TRPC6 ENSGALG00000029416 281 0.998 - - - - - - - 0.998 - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
27. C5orf24 ENSGALG00000006371 1573 0.998 - - - - - - - 0.998 - - chromosome 5 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:26746]
28. RP9 ENSGALG00000035453 1186 0.997 - - - - - - - 0.997 - - retinitis pigmentosa 9 (autosomal dominant)
29. H3-I H3-I 1498 0.997 - - - - - - - 0.997 - -
30. INOS INOS 313 0.997 - - - - - - - 0.997 - -
31. PHLPP1 ENSGALG00000012888 398 0.997 - - - - - - - 0.997 - - PH domain and leucine rich repeat protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:20610]
32. ATP8B4 ENSGALG00000002326 456 0.996 - - - - - - - 0.996 - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
33. C7orf25 ENSGALG00000040161 694 0.996 - - - - - - - 0.996 - - chromosome 7 open reading frame 25 [Source:HGNC Symbol;Acc:HGNC:21703]
34. MYH15 ENSGALG00000015358 6304 0.996 - - - - - - - 0.996 - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
35. ITGA9 ENSGALG00000029378 415 0.996 - - - - - - - 0.996 - - integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
36. FIGN ENSGALG00000011069 311 0.996 - - - - - - - 0.996 - - fidgetin, microtubule severing factor [Source:HGNC Symbol;Acc:HGNC:13285]
37. GTDC1 ENSGALG00000012424 1446 0.996 - - - - - - - 0.996 - - glycosyltransferase like domain containing 1 [Source:NCBI gene;Acc:424304]
38. TFEB ENSGALG00000039878 881 0.995 - - - - - - - 0.995 - - transcription factor EB [Source:NCBI gene;Acc:419922]
39. ADIPOR1 ENSGALG00000000094 1862 0.995 - - - - - - - 0.995 - - adiponectin receptor 1 [Source:NCBI gene;Acc:421148]
40. DEPDC7 ENSGALG00000011681 1181 0.994 - - - - - - - 0.994 - - DEP domain containing 7 [Source:NCBI gene;Acc:421593]
41. ALG9 ENSGALG00000021174 745 0.994 - - - - - - - 0.994 - - ALG9, alpha-1,2-mannosyltransferase, transcript variant X5
42. APOOL ENSGALG00000006978 1953 0.994 - - - - - - - 0.994 - - apolipoprotein O like [Source:NCBI gene;Acc:422271]
43. RGS17 ENSGALG00000026034 707 0.994 - - - - - - - 0.994 - - regulator of G protein signaling 17 [Source:NCBI gene;Acc:395645]
44. NEMF ENSGALG00000012263 2250 0.993 - - - - - - - 0.993 - - nuclear export mediator factor [Source:NCBI gene;Acc:428926]
45. HDGFL2 ENSGALG00000027068 1300 0.993 - - - - - - - 0.993 - - HDGF like 2 [Source:NCBI gene;Acc:772302]
46. PNISR ENSGALG00000015483 7711 0.992 - - - - - - - 0.992 - - PNN interacting serine and arginine rich protein [Source:NCBI gene;Acc:421796]
47. BTG1L ENSGALG00000004676 2293 0.992 - - - - - - - 0.992 - - protein BTG1-like
48. ARRDC4 ENSGALG00000007012 1039 0.992 - - - - - - - 0.992 - - arrestin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28087]
49. ABCA3 ENSGALG00000037837 1606 0.991 - - - - - - - 0.991 - - ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]
50. CC2D2A ENSGALG00000014514 1180 0.99 - - - - - - - 0.990 - - coiled-coil and C2 domain containing 2A [Source:HGNC Symbol;Acc:HGNC:29253]
51. DNAJA1 ENSGALG00000023066 3820 0.989 - - - - - - - 0.989 - - DnaJ heat shock protein family (Hsp40) member A1 [Source:NCBI gene;Acc:427376]
52. SMARCC1 ENSGALG00000032642 4842 0.989 - - - - - - - 0.989 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
53. PKP4 ENSGALG00000012561 3087 0.989 - - - - - - - 0.989 - - plakophilin 4 [Source:NCBI gene;Acc:424328]
54. AMMECR1L ENSGALG00000026728 2134 0.989 - - - - - - - 0.989 - - AMMECR1 like [Source:HGNC Symbol;Acc:HGNC:28658]
55. NSRP1 ENSGALG00000004186 1683 0.989 - - - - - - - 0.989 - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
56. REXO1 ENSGALG00000001043 3179 0.989 - - - - - - - 0.989 - - RNA exonuclease 1 homolog [Source:HGNC Symbol;Acc:HGNC:24616]
57. METTL22 ENSGALG00000033603 696 0.989 - - - - - - - 0.989 - - methyltransferase like 22 [Source:NCBI gene;Acc:425865]
58. CARS2 ENSGALG00000016847 3814 0.988 - - - - - - - 0.988 - - cysteinyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25695]
59. MTMR9 ENSGALG00000016649 2055 0.987 - - - - - - - 0.987 - - myotubularin related protein 9 [Source:NCBI gene;Acc:422033]
60. FGF18 ENSGALG00000002203 551 0.987 - - - - - - - 0.987 - - fibroblast growth factor 18 [Source:NCBI gene;Acc:395453]
61. NGEF ENSGALG00000036327 1048 0.987 - - - - - - - 0.987 - - neuronal guanine nucleotide exchange factor [Source:NCBI gene;Acc:424744]
62. TRMT44 ENSGALG00000015594 1490 0.986 - - - - - - - 0.986 - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
63. DCTN5 ENSGALG00000006088 3113 0.986 - - - - - - - 0.986 - - dynactin subunit 5 [Source:NCBI gene;Acc:416574]
64. gga-mir-1772 ENSGALG00000025300 2892 0.984 - - - - - - - 0.984 - - gga-mir-1772 [Source:miRBase;Acc:MI0007515]
65. TMEM57 ENSGALG00000001067 3367 0.984 - - - - - - - 0.984 - - transmembrane protein 57 [Source:NCBI gene;Acc:419590]
66. STX18 ENSGALG00000015012 1489 0.983 - - - - - - - 0.983 - - syntaxin 18 [Source:NCBI gene;Acc:422848]
67. REV3L ENSGALG00000015033 1917 0.983 - - - - - - - 0.983 - - REV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]
68. CHAF1A ENSGALG00000001126 6506 0.983 - - - - - - - 0.983 - - chromatin assembly factor 1 subunit A [Source:NCBI gene;Acc:770217]
69. PYCR1 ENSGALG00000007300 7987 0.982 - - - - - - - 0.982 - - pyrroline-5-carboxylate reductase 1 [Source:NCBI gene;Acc:769203]
70. GOLGB1 ENSGALG00000041494 2376 0.981 - - - - - - - 0.981 - - golgin B1 [Source:HGNC Symbol;Acc:HGNC:4429]
71. TMEM59 ENSGALG00000010746 4669 0.98 - - - - - - - 0.980 - - transmembrane protein 59 [Source:NCBI gene;Acc:424656]
72. ZC3H3 ENSGALG00000043265 1638 0.98 - - - - - - - 0.980 - - zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:430349]
73. NUP210L 370 0.978 - - - - - - - 0.978 - - nucleoporin 210 like
74. DUSP14 ENSGALG00000027641 3662 0.977 - - - - - - - 0.977 - - dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]
75. NR2F2 ENSGALG00000007000 4911 0.976 - - - - - - - 0.976 - - nuclear receptor subfamily 2 group F member 2 [Source:NCBI gene;Acc:386585]
76. ENSGALG00000014190 ENSGALG00000014190 5735 0.974 - - - - - - - 0.974 - -
77. USP32 ENSGALG00000005350 1686 0.973 - - - - - - - 0.973 - - ubiquitin specific peptidase 32, transcript variant X2
78. ARHGEF4 ENSGALG00000002193 558 0.973 - - - - - - - 0.973 - - Rho guanine nucleotide exchange factor 4 [Source:HGNC Symbol;Acc:HGNC:684]
79. DMB2 ENSGALG00000038393 1257 0.971 - - - - - - - 0.971 - - major histocompatibility complex, class II, DM beta 2 [Source:NCBI gene;Acc:417051]
80. gga-mir-1306 ENSGALG00000025271 1231 0.971 - - - - - - - 0.971 - - gga-mir-1306 [Source:miRBase;Acc:MI0007057]
81. BRCC3 ENSGALG00000005383 4844 0.97 - - - - - - - 0.970 - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
82. UCK2 ENSGALG00000003510 2512 0.968 - - - - - - - 0.968 - - uridine-cytidine kinase 2 [Source:NCBI gene;Acc:424406]
83. BAZ1B ENSGALG00000029408 5921 0.968 - - - - - - - 0.968 - - bromodomain adjacent to zinc finger domain 1B [Source:HGNC Symbol;Acc:HGNC:961]
84. NET1 ENSGALG00000008437 9850 0.967 - - - - - - - 0.967 - - neuroepithelial cell transforming 1 [Source:NCBI gene;Acc:416693]
85. TRIM24 ENSGALG00000012823 2725 0.966 - - - - - - - 0.966 - - tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
86. RNF214 ENSGALG00000036993 3729 0.965 - - - - - - - 0.965 - - ring finger protein 214 [Source:HGNC Symbol;Acc:HGNC:25335]
87. ACSL1 ENSGALG00000010628 2560 0.964 - - - - - - - 0.964 - - acyl-CoA synthetase long chain family member 1 [Source:NCBI gene;Acc:422547]
88. KHDRBS1 ENSGALG00000003272 4249 0.963 - - - - - - - 0.963 - - KH RNA binding domain containing, signal transduction associated 1 [Source:NCBI gene;Acc:374071]
89. SRP72 ENSGALG00000011403 13666 0.963 - - - - - - - 0.963 - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
90. UBAC2 ENSGALG00000016880 1343 0.963 - - - - - - - 0.963 - - UBA domain containing 2 [Source:NCBI gene;Acc:418778]
91. TUBAL3 ENSGALG00000008444 2979 0.962 - - - - - - - 0.962 - - tubulin alpha like 3 [Source:NCBI gene;Acc:416694]
92. TCEA1 ENSGALG00000015274 2706 0.961 - - - - - - - 0.961 - - transcription elongation factor A1 [Source:NCBI gene;Acc:421119]
93. SMC6 ENSGALG00000016467 3321 0.959 - - - - - - - 0.959 - - Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
94. KDM4A ENSGALG00000010074 7219 0.958 - - - - - - - 0.958 - - lysine demethylase 4A
95. SMIM12 ENSGALG00000030261 5860 0.957 - - - - - - - 0.957 - - small integral membrane protein 12 [Source:NCBI gene;Acc:100858028]
96. PEO1 PEO1 6747 0.956 - - - - - - - 0.956 - -
97. SLC25A1 ENSGALG00000041760 4744 0.956 - - - - - - - 0.956 - - solute carrier family 25 member 1, transcript variant X2
98. EDEM1 ENSGALG00000008320 3117 0.955 - - - - - - - 0.955 - - ER degradation enhancing alpha-mannosidase like protein 1 [Source:NCBI gene;Acc:416110]
99. LIG3 ENSGALG00000002288 7198 0.954 - - - - - - - 0.954 - - DNA ligase 3 [Source:NCBI gene;Acc:417530]
100. MTERFD1 MTERFD1 3640 0.952 - - - - - - - 0.952 - -

There are 191 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA