Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Hoxd1

Gene Name Gene ID Reads Annotation
Hoxd1 ENSMUSG00000042448 332 homeobox D1 [Source:MGI Symbol;Acc:MGI:96201]







Genes with expression patterns similar to Hoxd1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Hoxd1 ENSMUSG00000042448 332 6 1.000 1.000 1.000 1.000 1.000 1.000 homeobox D1 [Source:MGI Symbol;Acc:MGI:96201]
2. Zic3 ENSMUSG00000067860 549 2.459 - - - 0.818 0.805 0.836 zinc finger protein of the cerebellum 3 [Source:MGI Symbol;Acc:MGI:106676]
3. Zic4 ENSMUSG00000036972 1968 2.343 - - 0.702 0.817 0.824 - zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
4. C130071C03Rik ENSMUSG00000050334 1582 1.564 - - - 0.789 - 0.775 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
5. Sox2 ENSMUSG00000074637 8409 1.544 - - - 0.830 0.714 - SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
6. Phyhipl ENSMUSG00000037747 636 1.531 - - - 0.794 0.737 - phytanoyl-CoA hydroxylase interacting protein-like [Source:MGI Symbol;Acc:MGI:1918161]
7. Nrarp ENSMUSG00000078202 1708 1.509 0.736 - - 0.773 - - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
8. Fzd10 ENSMUSG00000081683 998 1.508 - - - 0.798 0.710 - frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
9. Pou3f2 ENSMUSG00000095139 2416 1.503 - - - 0.741 - 0.762 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
10. Lmx1b ENSMUSG00000038765 683 1.455 - - - 0.709 0.746 - LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]
11. Jam2 ENSMUSG00000053062 1020 1.449 - - - 0.715 - 0.734 junction adhesion molecule 2 [Source:MGI Symbol;Acc:MGI:1933820]
12. Scube2 ENSMUSG00000007279 406 1.427 0.708 0.719 - - - - signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
13. Prdm13 ENSMUSG00000040478 193 0.826 - - - 0.826 - - PR domain containing 13 [Source:MGI Symbol;Acc:MGI:2448528]
14. Pax3 ENSMUSG00000004872 3095 0.809 - - - 0.809 - - paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
15. Fgf15 ENSMUSG00000031073 527 0.807 - - - - - 0.807 fibroblast growth factor 15 [Source:MGI Symbol;Acc:MGI:1096383]
16. Barhl2 ENSMUSG00000034384 99 0.807 - - - - - 0.807 BarH like homeobox 2 [Source:MGI Symbol;Acc:MGI:1859314]
17. Ptchd4 ENSMUSG00000042256 194 0.798 - - - - 0.798 - patched domain containing 4 [Source:MGI Symbol;Acc:MGI:1920485]
18. Hoxb9 ENSMUSG00000020875 2764 0.797 - - - 0.797 - - homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]
19. Zic1 ENSMUSG00000032368 7734 0.796 - - - 0.796 - - zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
20. Gbx2 ENSMUSG00000034486 478 0.792 - - - 0.792 - - gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
21. Ckb ENSMUSG00000001270 8443 0.773 - - - 0.773 - - creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
22. RMST RMST 10 0.771 - - 0.771 - - -
23. Robo3 ENSMUSG00000032128 389 0.768 - - - 0.768 - - roundabout guidance receptor 3 [Source:MGI Symbol;Acc:MGI:1343102]
24. Sox3 ENSMUSG00000045179 1137 0.767 - - - 0.767 - - SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
25. Rfx4 ENSMUSG00000020037 455 0.765 - - - - - 0.765 regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
26. Sox21 ENSMUSG00000061517 464 0.765 - - - 0.765 - - SRY (sex determining region Y)-box 21 [Source:MGI Symbol;Acc:MGI:2654070]
27. Gm12466 ENSMUSG00000083539 19 0.763 - - 0.763 - - - predicted gene 12466 [Source:MGI Symbol;Acc:MGI:3651763]
28. Msi1 ENSMUSG00000054256 13785 0.753 - - - 0.753 - - musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
29. Tlx3 ENSMUSG00000040610 161 0.752 - - - 0.752 - - T cell leukemia, homeobox 3 [Source:MGI Symbol;Acc:MGI:1351209]
30. Ildr2 ENSMUSG00000040612 1142 0.748 - - - 0.748 - - immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
31. Igfbpl1 ENSMUSG00000035551 856 0.747 - - - - - 0.747 insulin-like growth factor binding protein-like 1 [Source:MGI Symbol;Acc:MGI:1933198]
32. Pou3f3 ENSMUSG00000045515 5137 0.745 - - - 0.745 - - POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
33. E530001K10Rik E530001K10Rik 32 0.742 - - - - - 0.742
34. Otp ENSMUSG00000021685 170 0.741 - - - 0.741 - - orthopedia homeobox [Source:MGI Symbol;Acc:MGI:99835]
35. Dtx4 ENSMUSG00000039982 2901 0.74 - - - 0.740 - - deltex 4, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:2672905]
36. Cntn2 ENSMUSG00000053024 1798 0.731 - - - 0.731 - - contactin 2 [Source:MGI Symbol;Acc:MGI:104518]
37. Gm25363 ENSMUSG00000089475 4 0.726 - - 0.726 - - - predicted gene, 25363 [Source:MGI Symbol;Acc:MGI:5455140]
38. 2510009E07Rik ENSMUSG00000043391 672 0.725 - - - 0.725 - - RIKEN cDNA 2510009E07 gene [Source:MGI Symbol;Acc:MGI:1919440]
39. H2-K1 ENSMUSG00000061232 613 0.724 - - - - - 0.724 histocompatibility 2, K1, K region [Source:MGI Symbol;Acc:MGI:95904]
40. Sall3 ENSMUSG00000024565 449 0.722 - - - 0.722 - - spalt like transcription factor 3 [Source:MGI Symbol;Acc:MGI:109295]
41. Sox1 ENSMUSG00000096014 349 0.722 - - - 0.722 - - SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]
42. Enc1 ENSMUSG00000041773 2185 0.722 - - - 0.722 - - ectodermal-neural cortex 1 [Source:MGI Symbol;Acc:MGI:109610]
43. Trim2 ENSMUSG00000027993 3587 0.719 - - - 0.719 - - tripartite motif-containing 2 [Source:MGI Symbol;Acc:MGI:1933163]
44. Ndp ENSMUSG00000040138 63 0.719 - - 0.719 - - - Norrie disease (pseudoglioma) (human) [Source:MGI Symbol;Acc:MGI:102570]
45. Cyp46a1 ENSMUSG00000021259 157 0.716 - - - - - 0.716 cytochrome P450, family 46, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1341877]
46. Gm5678 ENSMUSG00000082815 1 0.714 - - 0.714 - - - predicted gene 5678 [Source:MGI Symbol;Acc:MGI:3646098]
47. Ulbp1 ENSMUSG00000079685, ENSMUSG00000115960 1 0.714 - - 0.714 - - - UL16 binding protein 1 [Source:MGI Symbol;Acc:MGI:1925027]
48. Gm24343 ENSMUSG00000089333 1 0.714 - - 0.714 - - - predicted gene, 24343 [Source:MGI Symbol;Acc:MGI:5454120]
49. Vsig2 ENSMUSG00000001943 11 0.714 - - 0.714 - - - V-set and immunoglobulin domain containing 2 [Source:MGI Symbol;Acc:MGI:1928009]
50. M6pr-ps ENSMUSG00000080832 3 0.714 - - 0.714 - - - mannose-6-phosphate receptor, pseudogene [Source:MGI Symbol;Acc:MGI:96905]
51. Hspb3 ENSMUSG00000051456 4 0.714 - - 0.714 - - - heat shock protein 3 [Source:MGI Symbol;Acc:MGI:1928479]
52. Gm14620 ENSMUSG00000083112 3 0.714 - - 0.714 - - - predicted gene 14620 [Source:MGI Symbol;Acc:MGI:3705421]
53. Gm14425 ENSMUSG00000081156 4 0.714 - - 0.714 - - - predicted gene 14425 [Source:MGI Symbol;Acc:MGI:3652020]
54. Fam154a Fam154a 8 0.714 - - 0.714 - - -
55. AW495222 ENSMUSG00000087334 5 0.714 - - 0.714 - - - expressed sequence AW495222 [Source:MGI Symbol;Acc:MGI:2145435]
56. Gm9506 ENSMUSG00000081086 4 0.714 - - 0.714 - - - predicted gene 9506 [Source:MGI Symbol;Acc:MGI:3779916]
57. Ak9 ENSMUSG00000091415 3 0.714 - - 0.714 - - - adenylate kinase 9 [Source:MGI Symbol;Acc:MGI:2685080]
58. BC021785 BC021785 11 0.714 - - 0.714 - - -
59. RP24-376I11.1 RP24-376I11.1 1 0.714 - - 0.714 - - -
60. Slc6a20a ENSMUSG00000036814 2 0.714 - - 0.714 - - - solute carrier family 6 (neurotransmitter transporter), member 20A [Source:MGI Symbol;Acc:MGI:2143217]
61. Gm24355 ENSMUSG00000064792 5 0.714 - - 0.714 - - - predicted gene, 24355 [Source:MGI Symbol;Acc:MGI:5454132]
62. Rtp3 ENSMUSG00000066319 3 0.714 - - 0.714 - - - receptor transporter protein 3 [Source:MGI Symbol;Acc:MGI:2446841]
63. Gm15698 4 0.714 - - 0.714 - - - predicted gene 15698
64. Gm6580 ENSMUSG00000083169 4 0.714 - - 0.714 - - - predicted gene 6580 [Source:MGI Symbol;Acc:MGI:3646421]
65. Slain1 ENSMUSG00000055717 237 0.714 - - - - - 0.714 SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
66. Gm13634 Gm13634 10 0.714 - - 0.714 - - -
67. Klra2 ENSMUSG00000030187 1 0.714 - - 0.714 - - - killer cell lectin-like receptor, subfamily A, member 2 [Source:MGI Symbol;Acc:MGI:101906]
68. Gm17296 14 0.712 - - 0.712 - - - predicted gene, 17296, transcript variant X1
69. Tbr1 ENSMUSG00000035033 11 0.71 - - 0.710 - - - T-box brain gene 1 [Source:MGI Symbol;Acc:MGI:107404]
70. AW822252 ENSMUSG00000085998 2 0.71 - - 0.710 - - - expressed sequence AW822252 [Source:MGI Symbol;Acc:MGI:2148030]
71. Fabp7 ENSMUSG00000019874 3183 0.71 - - - 0.710 - - fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
72. Gcnt4 ENSMUSG00000091387 60 0.71 0.710 - - - - - glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) [Source:MGI Symbol;Acc:MGI:2684919]
73. Ednrb ENSMUSG00000022122 1909 0.708 - - - 0.708 - - endothelin receptor type B [Source:MGI Symbol;Acc:MGI:102720]
74. Cmtm1 ENSMUSG00000110430 1 0.705 - - 0.705 - - - CKLF-like MARVEL transmembrane domain containing 1 [Source:MGI Symbol;Acc:MGI:2447159]
75. Slc39a12 ENSMUSG00000036949 16 0.704 - - - - - 0.704 solute carrier family 39 (zinc transporter), member 12 [Source:MGI Symbol;Acc:MGI:2139274]
76. Ptprn2 ENSMUSG00000056553 489 0.703 - 0.703 - - - - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:MGI Symbol;Acc:MGI:107418]
77. Zfp536 ENSMUSG00000043456 869 0.702 - - - 0.702 - - zinc finger protein 536 [Source:MGI Symbol;Acc:MGI:1926102]
78. Gsx1 ENSMUSG00000053129 137 0.702 - - - 0.702 - - GS homeobox 1 [Source:MGI Symbol;Acc:MGI:95842]
79. Slc1a2 ENSMUSG00000005089 830 0.701 - - - 0.701 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
80. Slc22a4 ENSMUSG00000020334 23 0.701 - - 0.701 - - - solute carrier family 22 (organic cation transporter), member 4 [Source:MGI Symbol;Acc:MGI:1353479]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA