Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Hoxc6

Gene Name Gene ID Reads Annotation
Hoxc6 ENSMUSG00000001661 9818 homeobox C6 [Source:MGI Symbol;Acc:MGI:96197]







Genes with expression patterns similar to Hoxc6

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Hoxc6 ENSMUSG00000001661 9818 6 1.000 1.000 1.000 1.000 1.000 1.000 homeobox C6 [Source:MGI Symbol;Acc:MGI:96197]
2. Miat ENSMUSG00000097767 4258 2.371 - - 0.710 0.815 - 0.846 myocardial infarction associated transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444886]
3. Fez1 ENSMUSG00000032118 2537 2.364 0.870 - - 0.755 0.739 - fasciculation and elongation protein zeta 1 (zygin I) [Source:MGI Symbol;Acc:MGI:2670976]
4. Sox2 ENSMUSG00000074637 8409 2.337 - - - 0.798 0.722 0.817 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
5. Zic4 ENSMUSG00000036972 1968 2.326 - - - 0.785 0.728 0.813 zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
6. Nhlh2 ENSMUSG00000048540 1310 2.266 - - - 0.768 0.794 0.704 nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
7. Gm3764 ENSMUSG00000097156 474 2.213 - - - 0.727 0.759 0.727 predicted gene 3764 [Source:MGI Symbol;Acc:MGI:3781938]
8. 2610017I09Rik 2610017I09Rik 1595 1.634 - - - 0.815 0.819 -
9. Pou3f3 ENSMUSG00000045515 5137 1.632 - - - 0.758 - 0.874 POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
10. Nes ENSMUSG00000004891 8017 1.608 - - 0.767 0.841 - - nestin [Source:MGI Symbol;Acc:MGI:101784]
11. Nrarp ENSMUSG00000078202 1708 1.598 - - - 0.771 0.827 - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
12. Hoxc9 ENSMUSG00000036139 4145 1.592 - - 0.723 0.869 - - homeobox C9 [Source:MGI Symbol;Acc:MGI:96199]
13. Zic1 ENSMUSG00000032368 7734 1.592 - - - 0.783 - 0.809 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
14. Phf21b ENSMUSG00000016624 849 1.591 - - - 0.803 - 0.788 PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
15. Apba2 ENSMUSG00000030519 840 1.577 - - - 0.767 0.810 - amyloid beta (A4) precursor protein-binding, family A, member 2 [Source:MGI Symbol;Acc:MGI:1261791]
16. Tubb2b ENSMUSG00000045136 41060 1.545 - - - 0.788 0.757 - tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
17. Soga3 ENSMUSG00000038916 3972 1.538 - - - 0.779 0.759 - SOGA family member 3 [Source:MGI Symbol;Acc:MGI:1914662]
18. Pou3f2 ENSMUSG00000095139 2416 1.534 - - - 0.823 - 0.711 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
19. Tmsb4x ENSMUSG00000049775 61014 1.525 - - - 0.758 0.767 - thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
20. Basp1 ENSMUSG00000045763 22946 1.507 0.799 - - - 0.708 - brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
21. Slc1a2 ENSMUSG00000005089 830 1.505 - - - 0.743 0.762 - solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
22. C130071C03Rik ENSMUSG00000050334 1582 1.504 - - - 0.790 - 0.714 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
23. Hes6 ENSMUSG00000067071 1692 1.497 - - 0.702 0.795 - - hairy and enhancer of split 6 [Source:MGI Symbol;Acc:MGI:1859852]
24. Zfp536 ENSMUSG00000043456 869 1.497 - - 0.705 0.792 - - zinc finger protein 536 [Source:MGI Symbol;Acc:MGI:1926102]
25. Dll1 ENSMUSG00000014773 633 1.494 - - - 0.738 0.756 - delta like canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:104659]
26. Rundc3a ENSMUSG00000006575 421 1.471 - - - 0.768 0.703 - RUN domain containing 3A [Source:MGI Symbol;Acc:MGI:1858752]
27. Rhbdl3 ENSMUSG00000017692 783 1.467 - - - 0.733 0.734 - rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
28. AI854517 AI854517 539 1.466 - - - 0.712 0.754 -
29. Pax6 ENSMUSG00000027168 2751 1.466 - - - - 0.762 0.704 paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
30. Myt1 ENSMUSG00000010505 661 1.462 - - - 0.709 0.753 - myelin transcription factor 1 [Source:MGI Symbol;Acc:MGI:1100535]
31. Crabp2 ENSMUSG00000004885 6976 1.45 - - 0.704 0.746 - - cellular retinoic acid binding protein II [Source:MGI Symbol;Acc:MGI:88491]
32. Btg2 ENSMUSG00000020423 1222 1.444 - - - 0.735 0.709 - B cell translocation gene 2, anti-proliferative [Source:MGI Symbol;Acc:MGI:108384]
33. Cntn2 ENSMUSG00000053024 1798 1.44 - - - 0.736 - 0.704 contactin 2 [Source:MGI Symbol;Acc:MGI:104518]
34. Fzd10 ENSMUSG00000081683 998 1.431 - - - 0.708 - 0.723 frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
35. Npas3 ENSMUSG00000021010 2049 1.431 - - - 0.703 - 0.728 neuronal PAS domain protein 3 [Source:MGI Symbol;Acc:MGI:1351610]
36. Tmbim6 ENSMUSG00000023010 7081 0.939 0.939 - - - - - transmembrane BAX inhibitor motif containing 6 [Source:MGI Symbol;Acc:MGI:99682]
37. Ssbp2 ENSMUSG00000003992 5516 0.928 0.928 - - - - - single-stranded DNA binding protein 2 [Source:MGI Symbol;Acc:MGI:1914220]
38. Mrps14 ENSMUSG00000058267 4994 0.914 0.914 - - - - - mitochondrial ribosomal protein S14 [Source:MGI Symbol;Acc:MGI:1928141]
39. Chd7 ENSMUSG00000041235 7625 0.902 0.902 - - - - - chromodomain helicase DNA binding protein 7 [Source:MGI Symbol;Acc:MGI:2444748]
40. Snrpc ENSMUSG00000024217 5601 0.887 0.887 - - - - - U1 small nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:109489]
41. Srsf6 ENSMUSG00000016921 23712 0.878 0.878 - - - - - serine/arginine-rich splicing factor 6 [Source:MGI Symbol;Acc:MGI:1915246]
42. Rgs12 ENSMUSG00000029101 3712 0.867 0.867 - - - - - regulator of G-protein signaling 12 [Source:MGI Symbol;Acc:MGI:1918979]
43. Ago1 ENSMUSG00000041530 7703 0.865 0.865 - - - - - argonaute RISC catalytic subunit 1 [Source:MGI Symbol;Acc:MGI:2446630]
44. Serinc1 ENSMUSG00000019877 7383 0.865 0.865 - - - - - serine incorporator 1 [Source:MGI Symbol;Acc:MGI:1926228]
45. Ccdc34 ENSMUSG00000027160 5334 0.865 0.865 - - - - - coiled-coil domain containing 34 [Source:MGI Symbol;Acc:MGI:1915451]
46. Tpd52 ENSMUSG00000027506 1885 0.864 0.864 - - - - - tumor protein D52 [Source:MGI Symbol;Acc:MGI:107749]
47. Mrpl9 ENSMUSG00000028140 1835 0.864 0.864 - - - - - mitochondrial ribosomal protein L9 [Source:MGI Symbol;Acc:MGI:2137211]
48. Med1 ENSMUSG00000018160 2865 0.863 0.863 - - - - - mediator complex subunit 1 [Source:MGI Symbol;Acc:MGI:1100846]
49. Neurog2 ENSMUSG00000027967 670 0.863 0.863 - - - - - neurogenin 2 [Source:MGI Symbol;Acc:MGI:109619]
50. Sgol2 Sgol2 2618 0.863 0.863 - - - - -
51. Sh3bgrl ENSMUSG00000031246 3900 0.862 0.862 - - - - - SH3-binding domain glutamic acid-rich protein like [Source:MGI Symbol;Acc:MGI:1930849]
52. Cnnm3 ENSMUSG00000001138 1820 0.862 0.862 - - - - - cyclin M3 [Source:MGI Symbol;Acc:MGI:2151055]
53. Lsm4 ENSMUSG00000031848, ENSMUSG00000110900 4991 0.862 0.862 - - - - - LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:1354692]
54. Jam2 ENSMUSG00000053062 1020 0.862 - - - 0.862 - - junction adhesion molecule 2 [Source:MGI Symbol;Acc:MGI:1933820]
55. Arl2 ENSMUSG00000024944 4376 0.861 0.861 - - - - - ADP-ribosylation factor-like 2 [Source:MGI Symbol;Acc:MGI:1928393]
56. Pfkl ENSMUSG00000020277 2200 0.861 0.861 - - - - - phosphofructokinase, liver, B-type [Source:MGI Symbol;Acc:MGI:97547]
57. Fam192a ENSMUSG00000031774 2091 0.861 0.861 - - - - - family with sequence similarity 192, member A [Source:MGI Symbol;Acc:MGI:1919637]
58. Tbc1d16 ENSMUSG00000039976 4754 0.86 0.860 - - - - - TBC1 domain family, member 16 [Source:MGI Symbol;Acc:MGI:2652878]
59. Aurkaip1 ENSMUSG00000065990 4804 0.86 0.860 - - - - - aurora kinase A interacting protein 1 [Source:MGI Symbol;Acc:MGI:1913327]
60. Jam3 ENSMUSG00000031990 5781 0.86 0.860 - - - - - junction adhesion molecule 3 [Source:MGI Symbol;Acc:MGI:1933825]
61. Psmd13 ENSMUSG00000025487 5365 0.86 0.860 - - - - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 [Source:MGI Symbol;Acc:MGI:1345192]
62. Irak1 ENSMUSG00000031392 3219 0.86 0.860 - - - - - interleukin-1 receptor-associated kinase 1 [Source:MGI Symbol;Acc:MGI:107420]
63. Vps36 ENSMUSG00000031479 2501 0.86 0.860 - - - - - vacuolar protein sorting 36 [Source:MGI Symbol;Acc:MGI:1917410]
64. Opa1 ENSMUSG00000038084 1963 0.859 0.859 - - - - - OPA1, mitochondrial dynamin like GTPase [Source:MGI Symbol;Acc:MGI:1921393]
65. Fam175a 970 0.858 0.858 - - - - - family with sequence similarity 175, member A, transcript variant X2
66. Gm15662 Gm15662 1356 0.858 0.858 - - - - -
67. Abhd17c ENSMUSG00000038459 2034 0.857 0.857 - - - - - abhydrolase domain containing 17C [Source:MGI Symbol;Acc:MGI:1917428]
68. Zfp287 ENSMUSG00000005267 876 0.857 0.857 - - - - - zinc finger protein 287 [Source:MGI Symbol;Acc:MGI:2176561]
69. Mfap3 ENSMUSG00000020522 5793 0.857 0.857 - - - - - microfibrillar-associated protein 3 [Source:MGI Symbol;Acc:MGI:1924068]
70. Egln2 ENSMUSG00000058709 2852 0.857 0.857 - - - - - egl-9 family hypoxia-inducible factor 2 [Source:MGI Symbol;Acc:MGI:1932287]
71. Zfp367 ENSMUSG00000044934 1130 0.857 0.857 - - - - - zinc finger protein 367 [Source:MGI Symbol;Acc:MGI:2442266]
72. Nnt ENSMUSG00000025453, ENSMUSG00000116207 2284 0.857 0.857 - - - - - nicotinamide nucleotide transhydrogenase [Source:MGI Symbol;Acc:MGI:109279]
73. Psmd3 ENSMUSG00000017221 4266 0.856 0.856 - - - - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 [Source:MGI Symbol;Acc:MGI:98858]
74. Dyrk3 ENSMUSG00000016526 576 0.856 0.856 - - - - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 [Source:MGI Symbol;Acc:MGI:1330300]
75. Chmp6 ENSMUSG00000025371 1369 0.856 0.856 - - - - - charged multivesicular body protein 6 [Source:MGI Symbol;Acc:MGI:3583942]
76. Wnt5a ENSMUSG00000021994 2387 0.856 0.856 - - - - - wingless-type MMTV integration site family, member 5A [Source:MGI Symbol;Acc:MGI:98958]
77. Gm3244 1303 0.856 0.856 - - - - - predicted pseudogene 3244
78. Syt13 ENSMUSG00000027220 679 0.856 0.856 - - - - - synaptotagmin XIII [Source:MGI Symbol;Acc:MGI:1933945]
79. Wdr60 ENSMUSG00000042050 672 0.856 0.856 - - - - - WD repeat domain 60 [Source:MGI Symbol;Acc:MGI:2445085]
80. Bai3 Bai3 552 0.856 0.856 - - - - -
81. Rps6ka1 ENSMUSG00000003644 1196 0.855 0.855 - - - - - ribosomal protein S6 kinase polypeptide 1 [Source:MGI Symbol;Acc:MGI:104558]
82. Arhgef2 ENSMUSG00000028059 3179 0.855 0.855 - - - - - rho/rac guanine nucleotide exchange factor (GEF) 2 [Source:MGI Symbol;Acc:MGI:103264]
83. Zfp850 ENSMUSG00000096916 401 0.855 0.855 - - - - - zinc finger protein 850 [Source:MGI Symbol;Acc:MGI:3036281]
84. Rab11a ENSMUSG00000004771 5656 0.855 0.855 - - - - - RAB11A, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1858202]
85. Ttpal ENSMUSG00000017679 922 0.854 0.854 - - - - - tocopherol (alpha) transfer protein-like [Source:MGI Symbol;Acc:MGI:1923330]
86. Plekha1 ENSMUSG00000040268 3807 0.854 0.854 - - - - - pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 [Source:MGI Symbol;Acc:MGI:2442213]
87. 0610005C13Rik ENSMUSG00000109644 478 0.854 0.854 - - - - - RIKEN cDNA 0610005C13 gene [Source:MGI Symbol;Acc:MGI:1918911]
88. Abcd1 ENSMUSG00000031378 696 0.854 0.854 - - - - - ATP-binding cassette, sub-family D (ALD), member 1 [Source:MGI Symbol;Acc:MGI:1349215]
89. Dlg4 ENSMUSG00000020886 393 0.854 0.854 - - - - - discs large MAGUK scaffold protein 4 [Source:MGI Symbol;Acc:MGI:1277959]
90. Rcl1 ENSMUSG00000024785 1676 0.854 0.854 - - - - - RNA terminal phosphate cyclase-like 1 [Source:MGI Symbol;Acc:MGI:1913275]
91. Rmrp ENSMUSG00000088088 349 0.854 0.854 - - - - - RNA component of mitochondrial RNAase P [Source:MGI Symbol;Acc:MGI:97937]
92. Samsn1 ENSMUSG00000022876 406 0.854 0.854 - - - - - SAM domain, SH3 domain and nuclear localization signals, 1 [Source:MGI Symbol;Acc:MGI:1914992]
93. Mrps25 ENSMUSG00000014551 1972 0.854 0.854 - - - - - mitochondrial ribosomal protein S25 [Source:MGI Symbol;Acc:MGI:1928140]
94. Snx10 ENSMUSG00000038301 2115 0.853 0.853 - - - - - sorting nexin 10 [Source:MGI Symbol;Acc:MGI:1919232]
95. Rpl29 ENSMUSG00000048758 10651 0.852 0.852 - - - - - ribosomal protein L29 [Source:MGI Symbol;Acc:MGI:99687]
96. Isca2 ENSMUSG00000021241 4922 0.852 0.852 - - - - - iron-sulfur cluster assembly 2 [Source:MGI Symbol;Acc:MGI:1921566]
97. Smad3 ENSMUSG00000032402 3672 0.852 0.852 - - - - - SMAD family member 3 [Source:MGI Symbol;Acc:MGI:1201674]
98. Acad9 ENSMUSG00000027710 2657 0.852 0.852 - - - - - acyl-Coenzyme A dehydrogenase family, member 9 [Source:MGI Symbol;Acc:MGI:1914272]
99. Samd4 ENSMUSG00000021838 1321 0.852 0.852 - - - - - sterile alpha motif domain containing 4 [Source:MGI Symbol;Acc:MGI:1921730]
100. Slc2a3 ENSMUSG00000003153 5785 0.851 0.851 - - - - - solute carrier family 2 (facilitated glucose transporter), member 3 [Source:MGI Symbol;Acc:MGI:95757]

There are 124 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA