Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HOXD4

Gene Name Gene ID Reads Annotation
HOXD4 ENSGALG00000023419 6073 homeobox D4 [Source:NCBI gene;Acc:424139]











Genes with expression patterns similar to HOXD4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HOXD4 ENSGALG00000023419 6073 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox D4 [Source:NCBI gene;Acc:424139]
2. CRABP-I ENSGALG00000003193 67258 3.722 - - 0.716 0.819 0.701 0.775 - - 0.711 - cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
3. PTPRZ1 ENSGALG00000040114 3410 2.408 - - - 0.810 0.844 0.754 - - - - protein tyrosine phosphatase, receptor type Z1 [Source:NCBI gene;Acc:396403]
4. CERCAM ENSGALG00000004986 5158 2.388 - - - 0.749 0.808 0.831 - - - - cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
5. HES5 ENSGALG00000001141 6514 2.324 - - - 0.755 0.815 0.754 - - - - hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
6. PAX-7 PAX-7 3856 2.253 - - 0.701 0.718 - 0.834 - - - -
7. SLC35F1 ENSGALG00000029011 14728 2.133 - - - 0.721 - 0.701 - - - 0.711 solute carrier family 35 member F1 [Source:HGNC Symbol;Acc:HGNC:21483]
8. MARCKSL1 ENSGALG00000032335 88728 1.636 - - - 0.805 - 0.831 - - - - MARCKS like 1 [Source:NCBI gene;Acc:770764]
9. CSPG5 ENSGALG00000032184 991 1.62 - - - 0.780 0.840 - - - - - chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
10. SRGAP3 ENSGALG00000008378 4331 1.575 - - - - 0.773 0.802 - - - - SLIT-ROBO Rho GTPase activating protein 3 [Source:NCBI gene;Acc:416115]
11. OPTC ENSGALG00000003554 3698 1.573 - - - 0.798 - 0.775 - - - - opticin [Source:NCBI gene;Acc:395130]
12. PAX-6 PAX-6 2650 1.567 - - - 0.765 0.802 - - - - -
13. NCAM1 ENSGALG00000007839 19929 1.532 - - - 0.754 0.778 - - - - - Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001242604]
14. GNG10 ENSGALG00000015683 6905 1.515 - - - - 0.768 0.747 - - - - G protein subunit gamma 10 [Source:NCBI gene;Acc:769603]
15. HES6 ENSGALG00000028415 4830 1.514 - - - - 0.734 0.780 - - - - hes family bHLH transcription factor 6
16. LASP-2 LASP-2 4415 1.508 - - - - - 0.808 0.700 - - -
17. ENPP2 ENSGALG00000032746 6086 1.486 - - - - 0.745 0.741 - - - - ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:NCBI gene;Acc:420361]
18. ZBTB16 ENSGALG00000038540 5544 1.462 - - - - - 0.717 0.745 - - - Gallus gallus zinc finger and BTB domain containing 32 (ZBTB32), mRNA. [Source:RefSeq mRNA;Acc:NM_001321488]
19. DLL1 ENSGALG00000011182 1613 1.456 - - - 0.755 - 0.701 - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
20. CRMP1B CRMP1B 18633 1.433 - - - 0.703 0.730 - - - - -
21. ENSGALG00000013357 ENSGALG00000013357 2282 1.429 - - - - 0.719 0.710 - - - -
22. RGCC ENSGALG00000016954 1282 0.872 - - - - 0.872 - - - - - regulator of cell cycle [Source:HGNC Symbol;Acc:HGNC:20369]
23. PROCA1 668 0.85 - - - - - 0.850 - - - - protein interacting with cyclin A1
24. LFNG ENSGALG00000038515 5178 0.843 - - 0.843 - - - - - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
25. ENSGALG00000027373 ENSGALG00000027373 2129 0.837 - - - 0.837 - - - - - -
26. ZIC1 ENSGALG00000040532 6543 0.833 - - - 0.833 - - - - - - Zic family member 1 [Source:NCBI gene;Acc:374103]
27. DRAXIN ENSGALG00000004631 3122 0.833 - - - 0.833 - - - - - - dorsal inhibitory axon guidance protein [Source:NCBI gene;Acc:419492]
28. FAM171B ENSGALG00000002646 837 0.814 - - - - - 0.814 - - - - family with sequence similarity 171 member B [Source:HGNC Symbol;Acc:HGNC:29412]
29. USP10 ENSGALG00000005674 7768 0.81 - - - - - - 0.810 - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
30. TRIM9 ENSGALG00000012367 1267 0.808 - - - - - 0.808 - - - - tripartite motif containing 9 [Source:HGNC Symbol;Acc:HGNC:16288]
31. ENSGALG00000027002 ENSGALG00000027002 7570 0.806 - - - - 0.806 - - - - -
32. GTF2H4 GTF2H4 5227 0.806 - - - - - 0.806 - - - -
33. NSUN4 ENSGALG00000010360 3567 0.805 - - - - - - 0.805 - - - NOP2/Sun RNA methyltransferase family member 4 [Source:NCBI gene;Acc:424613]
34. ALDOC ENSGALG00000026077 106910 0.801 - - - - - 0.801 - - - - aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
35. LDHB ENSGALG00000035836 169726 0.799 - - - - - 0.799 - - - - lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
36. MYL4 ENSGALG00000000585 16982 0.799 - - - - - 0.799 - - - - myosin, light chain 4, alkali; atrial, embryonic [Source:NCBI gene;Acc:396472]
37. TUBB2B ENSGALG00000012821 41535 0.797 - - - - - 0.797 - - - - tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
38. SMOC1 ENSGALG00000009415 2403 0.79 - - - - - 0.790 - - - - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
39. MAP2 ENSGALG00000002789 6597 0.79 - - - - - - 0.790 - - - microtubule associated protein 2, transcript variant X33
40. FGFR3 ENSGALG00000015708 16853 0.788 - - - - - 0.788 - - - - fibroblast growth factor receptor 3 [Source:NCBI gene;Acc:396515]
41. ERCC4 ENSGALG00000002981 1178 0.786 - - - - - - - 0.786 - - Gallus gallus ERCC excision repair 4, endonuclease catalytic subunit (ERCC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001318411]
42. TMEM41A ENSGALG00000006649 3309 0.784 - - - - - - 0.784 - - - transmembrane protein 41A [Source:NCBI gene;Acc:424875]
43. TIPARP ENSGALG00000010256 1825 0.783 - - - - - - - 0.783 - - TCDD inducible poly(ADP-ribose) polymerase [Source:HGNC Symbol;Acc:HGNC:23696]
44. DNLZ 4501 0.783 - - - - - - - 0.783 - - DNL-type zinc finger, transcript variant X5
45. ASTN1 ENSGALG00000004472 855 0.782 - - - - - 0.782 - - - - astrotactin 1 [Source:HGNC Symbol;Acc:HGNC:773]
46. PIM1 ENSGALG00000038902 2358 0.781 - - - - - - 0.781 - - - Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986]
47. RBM38 ENSGALG00000026081 7115 0.781 - - - - - 0.781 - - - - RNA binding motif protein 38 [Source:NCBI gene;Acc:768866]
48. SOX10 ENSGALG00000012290 3942 0.778 - - - - - 0.778 - - - - SRY-box 10 [Source:NCBI gene;Acc:395573]
49. CUL5 ENSGALG00000017165 2480 0.777 - - - - - - 0.777 - - - cullin 5 [Source:HGNC Symbol;Acc:HGNC:2556]
50. CRYAB ENSGALG00000007945 937 0.775 - - - - - 0.775 - - - - crystallin alpha B [Source:NCBI gene;Acc:396089]
51. GDPD4 ENSGALG00000000690 824 0.774 - - - - 0.774 - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
52. TNRC6A ENSGALG00000006068 9166 0.774 - - - - - - 0.774 - - - trinucleotide repeat containing 6A [Source:HGNC Symbol;Acc:HGNC:11969]
53. ZBTB18 ENSGALG00000010705 3433 0.77 - - - - 0.770 - - - - - zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
54. PLCH1 ENSGALG00000010312 1294 0.769 - - - - - 0.769 - - - - phospholipase C eta 1 [Source:HGNC Symbol;Acc:HGNC:29185]
55. MPRIP ENSGALG00000004798 6700 0.769 - - - - - - - 0.769 - - myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
56. BLMH ENSGALG00000004259 36907 0.767 - - - - - - - 0.767 - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
57. GLI3 ENSGALG00000040266 9981 0.765 - - - - - - 0.765 - - - GLI family zinc finger 3 [Source:NCBI gene;Acc:420769]
58. RASSF2 ENSGALG00000030432 4822 0.764 - - - - 0.764 - - - - - Ras association domain family member 2 [Source:NCBI gene;Acc:419521]
59. PHLDB1 ENSGALG00000040030 2423 0.763 - - - - - 0.763 - - - - pleckstrin homology like domain family B member 1 [Source:HGNC Symbol;Acc:HGNC:23697]
60. FAM177A1 ENSGALG00000010046 4318 0.763 - - - - - - - 0.763 - - family with sequence similarity 177 member A1 [Source:NCBI gene;Acc:423323]
61. LIPG ENSGALG00000043734 2490 0.762 - - - - - 0.762 - - - - lipase G, endothelial type [Source:HGNC Symbol;Acc:HGNC:6623]
62. ENSGALG00000004283 ENSGALG00000004283 4771 0.761 - - - - - - - 0.761 - -
63. FANCC ENSGALG00000012618 7002 0.76 - - - - - - - 0.760 - - FA complementation group C [Source:NCBI gene;Acc:427468]
64. TMEM183A ENSGALG00000000223 6915 0.76 - - - - - - 0.760 - - - transmembrane protein 183A [Source:NCBI gene;Acc:421156]
65. LOC419390 ENSGALG00000001136 607 0.76 - - - - - 0.760 - - - - hairy and enhancer of split 5-like, transcript variant X1
66. MURC 3759 0.759 - - - - - 0.759 - - - - muscle related coiled-coil protein
67. CPOX ENSGALG00000015240 5292 0.758 - - - - - - - 0.758 - - coproporphyrinogen oxidase
68. C3H2ORF43 C3H2ORF43 5628 0.757 - - - - - - 0.757 - - -
69. ZFP92 ENSGALG00000015459 1638 0.756 - - - - - - - 0.756 - - zinc finger protein 92 homolog [Source:NCBI gene;Acc:418448]
70. GRAMD4 ENSGALG00000034274 3826 0.755 - - - 0.755 - - - - - - GRAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:29113]
71. FZD3 ENSGALG00000042308 3356 0.754 - - - - - 0.754 - - - - frizzled class receptor 3 [Source:NCBI gene;Acc:395572]
72. PHF14 ENSGALG00000038041 13687 0.754 - - - - - - - 0.754 - - PHD finger protein 14 [Source:NCBI gene;Acc:420583]
73. GADD45_1 GADD45_1 1433 0.753 - - - - - 0.753 - - - -
74. EIF5A2 ENSGALG00000009309 143671 0.753 - - 0.753 - - - - - - - eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
75. TANGO2 ENSGALG00000002056 1971 0.753 - - - - - - 0.753 - - - transport and golgi organization 2 homolog [Source:NCBI gene;Acc:416784]
76. ADAMTSL1 1479 0.752 - - - - 0.752 - - - - - ADAMTS like 1, transcript variant X3
77. SFXN5 ENSGALG00000016094 2678 0.75 - - - - - - 0.750 - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
78. CCDC90B ENSGALG00000037072 5088 0.75 - - - - - - - 0.750 - - coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:HGNC:28108]
79. FAM207A ENSGALG00000007513 8748 0.75 - - - - - - - 0.750 - - family with sequence similarity 207 member A [Source:HGNC Symbol;Acc:HGNC:15811]
80. H3-IX_1 H3-IX_1 54392 0.749 0.749 - - - - - - - - -
81. PTK2 ENSGALG00000031741 13103 0.749 - - - - - - 0.749 - - - protein tyrosine kinase 2 [Source:NCBI gene;Acc:396416]
82. ARHGAP32 ENSGALG00000043511 7916 0.749 - - - - - - - - - 0.749 Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
83. NFASC ENSGALG00000031776 4264 0.748 - - - - - 0.748 - - - - neurofascin [Source:NCBI gene;Acc:419824]
84. ENSGALG00000023609 ENSGALG00000023609 6933 0.748 - - - - - - 0.748 - - -
85. SDK2 ENSGALG00000031895 2682 0.748 - - - - - - - - - 0.748 sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]
86. GPM6A ENSGALG00000043480 2133 0.747 - - - - 0.747 - - - - - glycoprotein M6A [Source:NCBI gene;Acc:422569]
87. SAT1 ENSGALG00000016348 8469 0.746 - - - - - - - 0.746 - - spermidine/spermine N1-acetyltransferase 1 [Source:NCBI gene;Acc:374006]
88. GPR176 ENSGALG00000009619 5804 0.744 - - - - - 0.744 - - - - G protein-coupled receptor 176 [Source:HGNC Symbol;Acc:HGNC:32370]
89. SMPD3 ENSGALG00000034950 4335 0.744 - - - 0.744 - - - - - - sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]
90. HOXA3 ENSGALG00000027925 4287 0.743 - - - - - - - 0.743 - - homeobox A3 [Source:HGNC Symbol;Acc:HGNC:5104]
91. RRM2 ENSGALG00000016442 40375 0.743 - - - - - - - - 0.743 - ribonucleotide reductase regulatory subunit M2
92. TRMT10C ENSGALG00000015328 1939 0.742 - - - - - - - 0.742 - - tRNA methyltransferase 10C, mitochondrial RNase P subunit [Source:HGNC Symbol;Acc:HGNC:26022]
93. CENPI ENSGALG00000005038 2608 0.741 - - - - - - 0.741 - - - centromere protein I [Source:NCBI gene;Acc:395207]
94. COX19 ENSGALG00000027698 4398 0.741 - - - - - - 0.741 - - - cytochrome c oxidase assembly factor COX19 [Source:NCBI gene;Acc:416452]
95. PACS1 ENSGALG00000008567 1423 0.741 - - - - - - 0.741 - - - phosphofurin acidic cluster sorting protein 1, transcript variant X3
96. CCNG2 ENSGALG00000010347 9122 0.741 - - - - - - 0.741 - - - cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
97. TUBB2C TUBB2C 44249 0.74 - - - - - 0.740 - - - -
98. DNMT3B ENSGALG00000041461 12959 0.739 - - - - - 0.739 - - - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
99. DCLK2 ENSGALG00000032386 2253 0.739 - - - - - 0.739 - - - - doublecortin like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19002]
100. ASMTL ENSGALG00000016689 1802 0.739 - - - - - - - 0.739 - - acetylserotonin O-methyltransferase like [Source:HGNC Symbol;Acc:HGNC:751]

There are 108 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA