Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HOXD3

Gene Name Gene ID Reads Annotation
HOXD3 ENSGALG00000023420 2117 homeobox D3 [Source:HGNC Symbol;Acc:HGNC:5137]











Genes with expression patterns similar to HOXD3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HOXD3 ENSGALG00000023420 2117 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox D3 [Source:HGNC Symbol;Acc:HGNC:5137]
2. ENSGALG00000022967 ENSGALG00000022967 240 0.878 - - - - 0.878 - - - - -
3. CADM3 ENSGALG00000036925 1753 0.872 - - - - 0.872 - - - - - cell adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:17601]
4. DPP7 ENSGALG00000038145 4888 0.87 - - - - 0.870 - - - - - dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
5. CANT1 ENSGALG00000011822 2218 0.866 - - - - 0.866 - - - - - calcium activated nucleotidase 1 [Source:NCBI gene;Acc:430103]
6. KCNC4 ENSGALG00000000400 129 0.865 - - - - 0.865 - - - - - potassium voltage-gated channel, Shaw-related subfamily, member 4, transcript variant X1
7. SRSF4 1200 0.862 - - - - 0.862 - - - - - serine and arginine rich splicing factor 4, transcript variant X2
8. HSPH1 ENSGALG00000017077 735 0.86 - - - - 0.860 - - - - - heat shock protein family H (Hsp110) member 1 [Source:NCBI gene;Acc:418917]
9. PAQR8 ENSGALG00000016675 85 0.86 - - - - 0.860 - - - - - progestin and adipoQ receptor family member 8 [Source:NCBI gene;Acc:422042]
10. CCDC6 ENSGALG00000003165 93 0.858 - - - - 0.858 - - - - - coiled-coil domain containing 6 [Source:NCBI gene;Acc:423666]
11. STON2 ENSGALG00000010579 76 0.857 - - - - 0.857 - - - - - stonin 2 [Source:HGNC Symbol;Acc:HGNC:30652]
12. MOCS3 ENSGALG00000007986 308 0.854 - - - - 0.854 - - - - - molybdenum cofactor synthesis 3 [Source:HGNC Symbol;Acc:HGNC:15765]
13. DSL1 DSL1 113 0.853 - - - - 0.853 - - - - -
14. KIF21A ENSGALG00000007098 5919 0.852 - - - - 0.852 - - - - - kinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]
15. SPSB3 ENSGALG00000002285 1329 0.852 - - - - 0.852 - - - - - splA/ryanodine receptor domain and SOCS box containing 3 [Source:HGNC Symbol;Acc:HGNC:30629]
16. DUS2 856 0.852 - - - - 0.852 - - - - - dihydrouridine synthase 2, transcript variant X2
17. TEF ENSGALG00000011958 375 0.851 - - - - 0.851 - - - - - TEF, PAR bZIP transcription factor [Source:NCBI gene;Acc:396342]
18. CECR1 336 0.851 - - - - 0.851 - - - - - cat eye syndrome chromosome region, candidate 1, transcript variant X2
19. ABCD2 ENSGALG00000042554 1607 0.85 - - - - 0.850 - - - - - ATP binding cassette subfamily D member 2 [Source:NCBI gene;Acc:417694]
20. TAC1 ENSGALG00000009737 2211 0.85 - - - - 0.850 - - - - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
21. ENSGALG00000001346 ENSGALG00000001346 233 0.848 - - - - 0.848 - - - - -
22. FAM171B ENSGALG00000002646 837 0.846 - - - - 0.846 - - - - - family with sequence similarity 171 member B [Source:HGNC Symbol;Acc:HGNC:29412]
23. CSPP1 1756 0.845 - - - - 0.845 - - - - - centrosome and spindle pole associated protein 1
24. ASTE1 ENSGALG00000036171 155 0.845 - - - - 0.845 - - - - - asteroid homolog 1 (Drosophila), transcript variant X3
25. TRPC6 ENSGALG00000029416 281 0.843 - - - - 0.843 - - - - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
26. CLIC3 ENSGALG00000038789 233 0.839 - - - - 0.839 - - - - - chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
27. BBX ENSGALG00000015353 1281 0.839 - - - - 0.839 - - - - - BBX, HMG-box containing [Source:HGNC Symbol;Acc:HGNC:14422]
28. GLT8D1 ENSGALG00000001642 4232 0.832 - - - - 0.832 - - - - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
29. ACP6 ENSGALG00000015485 3147 0.832 - - - - 0.832 - - - - - acid phosphatase 6, lysophosphatidic [Source:NCBI gene;Acc:418458]
30. PPTC7 ENSGALG00000004550 154 0.831 - - - - 0.831 - - - - - PTC7 protein phosphatase homolog [Source:HGNC Symbol;Acc:HGNC:30695]
31. FAM183A 242 0.83 - - - - 0.830 - - - - - family with sequence similarity 183 member A, transcript variant 2
32. LRRC6 ENSGALG00000042548 227 0.829 - - - - 0.829 - - - - - leucine rich repeat containing 6 [Source:NCBI gene;Acc:420324]
33. APTX ENSGALG00000001954 692 0.826 - - - - 0.826 - - - - - aprataxin [Source:NCBI gene;Acc:395173]
34. KIFC3 ENSGALG00000043034 802 0.826 - - - - 0.826 - - - - - kinesin family member C3 [Source:HGNC Symbol;Acc:HGNC:6326]
35. KCNB1 ENSGALG00000004758 620 0.822 - - - - 0.822 - - - - - potassium voltage-gated channel subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:6231]
36. AVL9 ENSGALG00000041568 1558 0.821 - - - - 0.821 - - - - - AVL9 cell migration associated [Source:HGNC Symbol;Acc:HGNC:28994]
37. CDC16 ENSGALG00000016816 2162 0.82 - - - - 0.820 - - - - - cell division cycle 16 [Source:NCBI gene;Acc:418735]
38. KIF18B ENSGALG00000031553 3192 0.818 - - - - 0.818 - - - - - kinesin family member 18B [Source:NCBI gene;Acc:419968]
39. CMTM3 ENSGALG00000000424 393 0.818 - - - - 0.818 - - - - - CKLF like MARVEL transmembrane domain containing 3 [Source:NCBI gene;Acc:414829]
40. CAMLG ENSGALG00000006411 662 0.818 - - - - 0.818 - - - - - calcium modulating ligand [Source:NCBI gene;Acc:395808]
41. ENSGALG00000020497 ENSGALG00000020497 446 0.815 - - - - 0.815 - - - - -
42. GKAP1 ENSGALG00000012586 2908 0.814 - - - - 0.814 - - - - - G kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:17496]
43. MED7 ENSGALG00000003870 4244 0.81 - - - - 0.810 - - - - - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]
44. PCNP ENSGALG00000015330 15750 0.81 - - - - 0.810 - - - - - PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
45. GALNT16 ENSGALG00000009452 675 0.809 - - - - 0.809 - - - - - polypeptide N-acetylgalactosaminyltransferase 16 [Source:HGNC Symbol;Acc:HGNC:23233]
46. GGA.10540 GGA.10540 3324 0.809 - - - - 0.809 - - - - -
47. APMAP ENSGALG00000008651 2167 0.809 - - - - 0.809 - - - - - adipocyte plasma membrane associated protein [Source:NCBI gene;Acc:416715]
48. RUFY2 1442 0.807 - - - - 0.807 - - - - - RUN and FYVE domain containing 2, transcript variant X1
49. C26H6ORF89 C26H6ORF89 1826 0.807 - - - - 0.807 - - - - -
50. ENSGALG00000006865 ENSGALG00000006865 307 0.806 - - - - 0.806 - - - - -
51. PRR5 ENSGALG00000014213 3408 0.806 - - - - - - 0.806 - - - proline rich 5 [Source:NCBI gene;Acc:418237]
52. AASDHPPT ENSGALG00000027981 1017 0.805 - - - - 0.805 - - - - - aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]
53. PRMT10 PRMT10 1169 0.802 - - - - 0.802 - - - - -
54. CCDC88A ENSGALG00000043587 2208 0.801 - - - - 0.801 - - - - - coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]
55. NAT9 ENSGALG00000007723 2098 0.801 - - - - 0.801 - - - - - N-acetyltransferase 9 (putative), transcript variant X7
56. GPR158 ENSGALG00000007667 111 0.8 - - - - 0.800 - - - - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
57. MRPL55 5995 0.8 - - - - 0.800 - - - - - mitochondrial ribosomal protein L55
58. RPA3 ENSGALG00000010700 6212 0.799 - - - - 0.799 - - - - - replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
59. STIL ENSGALG00000010478 1398 0.798 - - - - 0.798 - - - - - STIL, centriolar assembly protein [Source:HGNC Symbol;Acc:HGNC:10879]
60. ENSGALG00000001591 ENSGALG00000001591 784 0.798 - - - - 0.798 - - - - -
61. CFTR ENSGALG00000032986 424 0.796 - - - - 0.796 - - - - - cystic fibrosis transmembrane conductance regulator [Source:NCBI gene;Acc:100049619]
62. GABRA3 ENSGALG00000007269 985 0.796 - - - - 0.796 - - - - - gamma-aminobutyric acid type A receptor alpha3 subunit [Source:HGNC Symbol;Acc:HGNC:4077]
63. HDAC4 ENSGALG00000004288 2124 0.796 - - - - 0.796 - - - - - histone deacetylase 4 [Source:NCBI gene;Acc:374207]
64. B3GAT2 ENSGALG00000031590 615 0.795 - - - - 0.795 - - - - - beta-1,3-glucuronyltransferase 2 [Source:NCBI gene;Acc:428638]
65. RIOK3 ENSGALG00000015004 4249 0.795 - - - - 0.795 - - - - - RIO kinase 3 [Source:HGNC Symbol;Acc:HGNC:11451]
66. NPY ENSGALG00000010983 441 0.795 - - - - 0.795 - - - - - neuropeptide Y [Source:NCBI gene;Acc:396464]
67. SCAF4 ENSGALG00000033965 2027 0.795 - - - - 0.795 - - - - - SR-related CTD associated factor 4 [Source:NCBI gene;Acc:418492]
68. HOXB-7 HOXB-7 2066 0.795 - - - - 0.795 - - - - -
69. KIAA1407 KIAA1407 252 0.793 - - - - 0.793 - - - - -
70. U2SURP ENSGALG00000002612 4255 0.793 - - - - 0.793 - - - - - U2 snRNP associated SURP domain containing [Source:HGNC Symbol;Acc:HGNC:30855]
71. PPM1M ENSGALG00000033277 556 0.793 - - - - 0.793 - - - - - protein phosphatase, Mg2+/Mn2+ dependent 1M [Source:NCBI gene;Acc:415941]
72. gga-mir-1306 ENSGALG00000025271 1231 0.791 - - - - 0.791 - - - - - gga-mir-1306 [Source:miRBase;Acc:MI0007057]
73. PLEKHB1 ENSGALG00000017321 443 0.79 - - - - 0.790 - - - - - pleckstrin homology domain containing B1 [Source:NCBI gene;Acc:419064]
74. OFD1 ENSGALG00000016576 1916 0.789 - - - - 0.789 - - - - - OFD1, centriole and centriolar satellite protein [Source:HGNC Symbol;Acc:HGNC:2567]
75. VRTN ENSGALG00000010232 692 0.787 - - - - 0.787 - - - - - vertebrae development associated [Source:HGNC Symbol;Acc:HGNC:20223]
76. DEPDC1B ENSGALG00000014729 5334 0.787 - - - - 0.787 - - - - - DEP domain containing 1B [Source:NCBI gene;Acc:427152]
77. CCDC102A ENSGALG00000029999 324 0.786 - - - - 0.786 - - - - - coiled-coil domain containing 102A [Source:HGNC Symbol;Acc:HGNC:28097]
78. METRN ENSGALG00000035634 1871 0.784 - - - - 0.784 - - - - - meteorin, glial cell differentiation regulator [Source:HGNC Symbol;Acc:HGNC:14151]
79. SMN ENSGALG00000002430 7515 0.784 - - - - 0.784 - - - - - survival of motor neuron [Source:NCBI gene;Acc:374025]
80. FDX1 ENSGALG00000026507 2573 0.783 - - - - 0.783 - - - - - ferredoxin 1 [Source:NCBI gene;Acc:373947]
81. RNF126 ENSGALG00000042948 4724 0.783 - - - - 0.783 - - - - - ring finger protein 126 [Source:NCBI gene;Acc:420085]
82. PLEK2 ENSGALG00000009562 706 0.783 - - - - 0.783 - - - - - pleckstrin 2 [Source:NCBI gene;Acc:423278]
83. C11H19ORF12 C11H19ORF12 5149 0.781 - - - - 0.781 - - - - -
84. C1orf50 ENSGALG00000004800 4894 0.781 - - - - 0.781 - - - - - chromosome 1 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:28795]
85. RELL1 ENSGALG00000014336 2950 0.78 - - - - 0.780 - - - - - RELT like 1 [Source:NCBI gene;Acc:422795]
86. CAPN5 ENSGALG00000040478 2414 0.779 - - - - 0.779 - - - - - calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
87. SCARB2 ENSGALG00000011499 2763 0.779 - - - - 0.779 - - - - - scavenger receptor class B member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
88. FLCN ENSGALG00000004816 4101 0.776 - - - - 0.776 - - - - - folliculin, transcript variant X1
89. PTX3 ENSGALG00000028284 2984 0.776 - - - - 0.776 - - - - - pentraxin 3 [Source:NCBI gene;Acc:548626]
90. PPWD1 ENSGALG00000014756 1118 0.775 - - - - 0.775 - - - - - peptidylprolyl isomerase domain and WD repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:28954]
91. CNN2 ENSGALG00000027777 512 0.774 - - - - 0.774 - - - - - calponin 2 [Source:NCBI gene;Acc:100216000]
92. PDIA5 ENSGALG00000011689 6913 0.774 - - - - 0.774 - - - - - protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]
93. CCDC107 ENSGALG00000021897 1223 0.771 - - - - 0.771 - - - - - coiled-coil domain containing 107
94. KLHDC3 ENSGALG00000008536 1961 0.767 - - - - 0.767 - - - - - kelch domain containing 3 [Source:HGNC Symbol;Acc:HGNC:20704]
95. DAB1 ENSGALG00000010857 1085 0.766 - - - - 0.766 - - - - - DAB1, reelin adaptor protein [Source:NCBI gene;Acc:374083]
96. CEP44 ENSGALG00000020201 1060 0.766 - - - - 0.766 - - - - - centrosomal protein 44 [Source:HGNC Symbol;Acc:HGNC:29356]
97. NMB ENSGALG00000043506 1387 0.764 - - - - 0.764 - - - - - neuromedin B [Source:NCBI gene;Acc:415333]
98. INPP5E ENSGALG00000001964 3580 0.764 - - - - 0.764 - - - - - inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
99. GPR125 GPR125 2753 0.764 - - - - 0.764 - - - - -
100. ENSGALG00000028772 ENSGALG00000028772 1636 0.763 - - - - 0.763 - - - - -

There are 79 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA