Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HOXB3

Gene Name Gene ID Reads Annotation
HOXB3 ENSGALG00000043219 5198 homeobox B3 [Source:NCBI gene;Acc:395502]











Genes with expression patterns similar to HOXB3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HOXB3 ENSGALG00000043219 5198 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox B3 [Source:NCBI gene;Acc:395502]
2. SAMM50 ENSGALG00000014194 20437 1.98 - - - - 0.982 - 0.998 - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
3. MTF2 ENSGALG00000043087 15225 1.942 - - - - 0.953 - 0.989 - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
4. PKM ENSGALG00000001992 93960 1.803 - - - - 0.876 - 0.927 - - - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
5. FANCC ENSGALG00000012618 7002 1.758 - - - - - - 0.985 0.773 - - FA complementation group C [Source:NCBI gene;Acc:427468]
6. C-MET C-MET 1650 1 - - - - - - 1.000 - - -
7. VPS41 ENSGALG00000031635 4391 1 - - - - - - 1.000 - - - VPS41, HOPS complex subunit [Source:NCBI gene;Acc:420762]
8. TRIM37 ENSGALG00000005084 4036 1 - - - - - - 1.000 - - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
9. RARRES2 ENSGALG00000042642 3043 1 - - - - - - 1.000 - - - retinoic acid receptor responder (tazarotene induced) 2 [Source:NCBI gene;Acc:420366]
10. FAAH ENSGALG00000010433 3309 1 - - - - - - 1.000 - - - fatty acid amide hydrolase [Source:HGNC Symbol;Acc:HGNC:3553]
11. POGZ ENSGALG00000036365 4056 0.999 - - - - - - 0.999 - - - pogo transposable element with ZNF domain, transcript variant X2
12. CCDC47 ENSGALG00000000564 6584 0.999 - - - - - - 0.999 - - - coiled-coil domain containing 47 [Source:HGNC Symbol;Acc:HGNC:24856]
13. CASC4 ENSGALG00000008208 8338 0.999 - - - - - - 0.999 - - - cancer susceptibility 4 [Source:NCBI gene;Acc:415575]
14. USP34 ENSGALG00000004455 6667 0.999 - - - - - - 0.999 - - - ubiquitin specific peptidase 34 [Source:NCBI gene;Acc:421193]
15. FAM206A ENSGALG00000019524 7170 0.999 - - - - - - 0.999 - - - family with sequence similarity 206 member A [Source:NCBI gene;Acc:420983]
16. ZCCHC17 ENSGALG00000000618 5163 0.999 - - - - - - 0.999 - - - zinc finger CCHC-type containing 17 [Source:NCBI gene;Acc:404295]
17. GTF2I ENSGALG00000021665 6812 0.999 - - - - - - 0.999 - - - general transcription factor IIi [Source:HGNC Symbol;Acc:HGNC:4659]
18. SH2D3C ENSGALG00000005036 5101 0.999 - - - - - - 0.999 - - - SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
19. PPP1CB ENSGALG00000010026 6909 0.998 - - - - - - 0.998 - - - protein phosphatase 1 catalytic subunit beta [Source:NCBI gene;Acc:396019]
20. SLC9A3R2 ENSGALG00000005608 4220 0.998 - - - - - - 0.998 - - - SLC9A3 regulator 2 [Source:HGNC Symbol;Acc:HGNC:11076]
21. WDR33 ENSGALG00000002043 6340 0.998 - - - - - - 0.998 - - - WD repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:25651]
22. SF3A1 ENSGALG00000007937 11716 0.998 - - - - - - 0.998 - - - splicing factor 3a subunit 1 [Source:NCBI gene;Acc:427717]
23. GAS41 GAS41 9941 0.997 - - - - - - 0.997 - - -
24. TLE4 TLE4 7278 0.997 - - - - - - 0.997 - - -
25. EIF5B ENSGALG00000016764 30681 0.997 - - - - - - 0.997 - - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
26. STT3B ENSGALG00000011465 11939 0.996 - - - - - - 0.996 - - - STT3B, catalytic subunit of the oligosaccharyltransferase complex [Source:NCBI gene;Acc:428444]
27. TMEM9B ENSGALG00000005908 14074 0.996 - - - - - - 0.996 - - - TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
28. SSR1 ENSGALG00000012798 62626 0.995 - - - - - - 0.995 - - - signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
29. PCNA ENSGALG00000029292 19163 0.995 - - - - - - 0.995 - - - proliferating cell nuclear antigen [Source:NCBI gene;Acc:373984]
30. FKBP9 ENSGALG00000037669 12079 0.994 - - - - - - 0.994 - - - FK506 binding protein 9 [Source:NCBI gene;Acc:395652]
31. BID ENSGALG00000013039 12427 0.993 - - - - - - 0.993 - - - BH3 interacting domain death agonist [Source:NCBI gene;Acc:395236]
32. NSF ENSGALG00000001055 7399 0.993 - - - - - - 0.993 - - - N-ethylmaleimide sensitive factor, vesicle fusing ATPase [Source:NCBI gene;Acc:419972]
33. NSG1 ENSGALG00000015010 5829 0.992 - - - - 0.992 - - - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
34. NDST2 ENSGALG00000005107 4224 0.991 - - - - 0.991 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
35. BTG1 ENSGALG00000011276 17496 0.991 - - - - - - 0.991 - - - BTG anti-proliferation factor 1 [Source:NCBI gene;Acc:396295]
36. OPTC ENSGALG00000003554 3698 0.991 - - - - 0.991 - - - - - opticin [Source:NCBI gene;Acc:395130]
37. TM2D2 ENSGALG00000003356 7088 0.991 - - - - 0.991 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
38. MRPL22 ENSGALG00000003919 2760 0.989 - - - - 0.989 - - - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
39. PPP1R8 ENSGALG00000000729 11797 0.988 - - - - - - 0.988 - - - protein phosphatase 1 regulatory subunit 8 [Source:NCBI gene;Acc:419564]
40. TBC1D7 ENSGALG00000012731 4891 0.988 - - - - 0.988 - - - - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
41. MED1 ENSGALG00000001708 9556 0.988 - - - - 0.988 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
42. WHSC1L1 4065 0.987 - - - - 0.987 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
43. USP1 ENSGALG00000010957 8297 0.987 - - - - 0.987 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
44. HTRA3 ENSGALG00000034673 512 0.987 - - - - 0.987 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
45. NAA15 ENSGALG00000009782 18563 0.987 - - - - - - 0.987 - - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:30782]
46. MAP1B ENSGALG00000014999 6288 0.987 - - - - 0.987 - - - - - microtubule associated protein 1B
47. FAM98A ENSGALG00000010428 9585 0.987 - - - - 0.987 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
48. RAE1 ENSGALG00000007653 8930 0.986 - - - - 0.986 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
49. CCDC59 ENSGALG00000028648 9272 0.986 - - - - 0.986 - - - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
50. gga-mir-6584 ENSGALG00000028834 1481 0.986 - - - - 0.986 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
51. NOL6 ENSGALG00000030730 7191 0.986 - - - - 0.986 - - - - - nucleolar protein 6
52. MYEOV2 MYEOV2 5155 0.986 - - - - 0.986 - - - - -
53. MRPL46 ENSGALG00000006782 5033 0.986 - - - - 0.986 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
54. RNF113A ENSGALG00000000538 3985 0.985 - - - - 0.985 - - - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
55. PPAPDC1B PPAPDC1B 6698 0.985 - - - - 0.985 - - - - -
56. STK3 ENSGALG00000032850 6339 0.985 - - - - - - 0.985 - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
57. AGPAT3 ENSGALG00000031932 6903 0.985 - - - - 0.985 - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
58. SEC61A2 ENSGALG00000036300 4235 0.985 - - - - 0.985 - - - - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
59. OLFML3 ENSGALG00000001956 28633 0.985 - - - - - - 0.985 - - - olfactomedin like 3 [Source:NCBI gene;Acc:419882]
60. HYOU1 ENSGALG00000007659 3555 0.984 - - - - 0.984 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
61. EPB41L1 ENSGALG00000034171 3616 0.984 - - - - 0.984 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
62. BCL9 ENSGALG00000037655 4620 0.984 - - - - 0.984 - - - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
63. TMEM18 ENSGALG00000028744 11779 0.984 - - - - 0.984 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
64. TMEM39B ENSGALG00000003287 4125 0.984 - - - - 0.984 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
65. ABCC1 ENSGALG00000006646 2596 0.984 - - - - 0.984 - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
66. GFPT1 ENSGALG00000036391 14025 0.984 - - - - - - 0.984 - - - glutamine--fructose-6-phosphate transaminase 1 [Source:NCBI gene;Acc:419514]
67. C15H12ORF49 C15H12ORF49 13250 0.983 - - - - 0.983 - - - - -
68. THBS1 ENSGALG00000009626 3521 0.983 - - - - 0.983 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
69. C4orf27 C4orf27 16724 0.983 - - - - 0.983 - - - - -
70. PHKA1 ENSGALG00000004801 2510 0.983 - - - - 0.983 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
71. IBA57 ENSGALG00000005328 4362 0.982 - - - - 0.982 - - - - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
72. OAF ENSGALG00000006715 12518 0.982 - - - - 0.982 - - - - - out at first homolog [Source:NCBI gene;Acc:395161]
73. HMGB3 ENSGALG00000009071 12011 0.982 - - - - 0.982 - - - - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
74. CENPE ENSGALG00000013208 12337 0.982 - - - - 0.982 - - - - - centromere protein E, transcript variant X4
75. MRPS11 ENSGALG00000006777 16009 0.982 - - - - 0.982 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
76. MCM4 ENSGALG00000012915 13151 0.981 - - - - 0.981 - - - - - minichromosome maintenance complex component 4
77. TRIM33 ENSGALG00000001976 7404 0.981 - - - - 0.981 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
78. KCTD9 ENSGALG00000000275 3455 0.981 - - - - 0.981 - - - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
79. TNPO3 ENSGALG00000039420 5178 0.981 - - - - 0.981 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
80. VPS8 ENSGALG00000006704 5419 0.981 - - - - 0.981 - - - - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
81. M6PR ENSGALG00000031681 9442 0.98 - - - - 0.980 - - - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
82. SPG21 ENSGALG00000007262 8050 0.98 - - - - 0.980 - - - - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
83. DNAJC2 ENSGALG00000008249 28064 0.98 - - - - 0.980 - - - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
84. LUC7L2 ENSGALG00000036238 11817 0.979 - - - - 0.979 - - - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
85. TBRG4 ENSGALG00000038102 9269 0.979 - - - - 0.979 - - - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
86. UQCRC2 ENSGALG00000002490 23477 0.978 - - - - 0.978 - - - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
87. CREPT CREPT 17142 0.977 - - - - 0.977 - - - - -
88. INCENP ENSGALG00000007537 16617 0.977 - - - - 0.977 - - - - - inner centromere protein [Source:NCBI gene;Acc:396270]
89. PGAM5 ENSGALG00000002137 7700 0.976 - - - - 0.976 - - - - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
90. RILPL2 ENSGALG00000003321 5632 0.976 - - - - 0.976 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
91. LPHN2 LPHN2 16507 0.976 - - - - - - 0.976 - - -
92. LARS ENSGALG00000007494 13966 0.976 - - - - - - 0.976 - - - leucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:6512]
93. RAB21 ENSGALG00000010183 7718 0.976 - - - - 0.976 - - - - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
94. MORN4 ENSGALG00000006149 7772 0.976 - - - - 0.976 - - - - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
95. ETF1 ENSGALG00000002262 14560 0.975 - - - - 0.975 - - - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
96. SEC63 ENSGALG00000015308 11596 0.973 - - - - 0.973 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
97. RALB ENSGALG00000026493 14590 0.972 - - - - 0.972 - - - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
98. NUP37 ENSGALG00000012759 9985 0.971 - - - - 0.971 - - - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
99. PUF60 ENSGALG00000039901 26902 0.97 - - - - 0.970 - - - - - poly(U) binding splicing factor 60 [Source:NCBI gene;Acc:426402]
100. TCF7L2 ENSGALG00000008883 13688 0.97 - - - - 0.970 - - - - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]

There are 130 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA