Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HOXA4

Gene Name Gene ID Reads Annotation
HOXA4 ENSGALG00000022622 22327 homeobox A4 [Source:NCBI gene;Acc:395307]











Genes with expression patterns similar to HOXA4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HOXA4 ENSGALG00000022622 22327 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox A4 [Source:NCBI gene;Acc:395307]
2. BTBD1 ENSGALG00000006020 14157 1.803 - - - - - - 0.993 0.810 - - BTB domain containing 1 [Source:NCBI gene;Acc:415461]
3. PSMD14 ENSGALG00000011128 13335 1.76 - - - - 0.768 - 0.992 - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
4. MRPL22 ENSGALG00000003919 2760 1.608 - - - - 0.723 - - 0.885 - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
5. PAX-7 PAX-7 3856 1.541 - - - - 0.834 0.707 - - - -
6. MRPL21 ENSGALG00000004362 20796 0.996 - - - - - - 0.996 - - - mitochondrial ribosomal protein L21 [Source:NCBI gene;Acc:423000]
7. NANS ENSGALG00000015320 10552 0.996 - - - - - - 0.996 - - - N-acetylneuraminate synthase [Source:NCBI gene;Acc:427283]
8. SPC25 ENSGALG00000010900 14238 0.994 - - - - - - 0.994 - - - SPC25, NDC80 kinetochore complex component [Source:NCBI gene;Acc:424172]
9. RBPMS_1 ENSGALG00000010291 16146 0.993 - - - - - - 0.993 - - - RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]
10. OAZ2 ENSGALG00000036288 13213 0.993 - - - - - - 0.993 - - - Gallus gallus ornithine decarboxylase antizyme 2 (OAZ2), mRNA. [Source:RefSeq mRNA;Acc:NM_001142862]
11. AP1G1 12403 0.993 - - - - - - 0.993 - - - adaptor related protein complex 1 gamma 1 subunit, transcript variant X2
12. USP9X ENSGALG00000016236 9419 0.992 - - - - - - 0.992 - - - ubiquitin specific peptidase 9, X-linked, transcript variant X3
13. NDUFS5 ENSGALG00000003625 27698 0.992 - - - - - - 0.992 - - - NADH:ubiquinone oxidoreductase subunit S5 [Source:HGNC Symbol;Acc:HGNC:7712]
14. RWDD3 ENSGALG00000038421 10909 0.992 - - - - - - 0.992 - - - RWD domain containing 3 [Source:NCBI gene;Acc:424481]
15. EMC1 ENSGALG00000003969 6876 0.991 - - - - - - 0.991 - - - ER membrane protein complex subunit 1 [Source:NCBI gene;Acc:419470]
16. MSH6 ENSGALG00000008957 6396 0.991 - - - - - - 0.991 - - - mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
17. SLC12A4 ENSGALG00000034179 5674 0.991 - - - - - - 0.991 - - - solute carrier family 12 member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
18. SP4 ENSGALG00000039454 5597 0.991 - - - - - - 0.991 - - - Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
19. SMARCD2 ENSGALG00000029304 11867 0.991 - - - - - - 0.991 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:HGNC:11107]
20. NUP153 ENSGALG00000012720 8079 0.991 - - - - - - 0.991 - - - nucleoporin 153 [Source:HGNC Symbol;Acc:HGNC:8062]
21. NUP133 ENSGALG00000011091 3804 0.991 - - - - - - 0.991 - - - nucleoporin 133 [Source:HGNC Symbol;Acc:HGNC:18016]
22. MIPEP ENSGALG00000017118 8666 0.991 - - - - - - 0.991 - - - mitochondrial intermediate peptidase [Source:HGNC Symbol;Acc:HGNC:7104]
23. KDM4B ENSGALG00000034592 6711 0.99 - - - - - - 0.990 - - - lysine demethylase 4B, transcript variant X8
24. NUP188 ENSGALG00000043394 9288 0.99 - - - - - - 0.990 - - - nucleoporin 188 [Source:NCBI gene;Acc:417198]
25. SSR2 ENSGALG00000000764 32190 0.99 - - - - - - 0.990 - - - signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
26. NTPCR ENSGALG00000011015 8652 0.99 - - - - - - 0.990 - - - nucleoside-triphosphatase, cancer-related [Source:NCBI gene;Acc:428588]
27. NDUFB5 ENSGALG00000009076 32963 0.989 - - - - - - 0.989 - - - NADH:ubiquinone oxidoreductase subunit B5 [Source:NCBI gene;Acc:424978]
28. HIBCH ENSGALG00000043307 11990 0.989 - - - - - - 0.989 - - - 3-hydroxyisobutyryl-CoA hydrolase [Source:NCBI gene;Acc:423979]
29. PRIM2 ENSGALG00000016278 5160 0.989 - - - - - - 0.989 - - - DNA primase subunit 2 [Source:NCBI gene;Acc:421878]
30. HOXB2 ENSGALG00000025774 5280 0.989 - - - - - - 0.989 - - - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
31. ACVR1 ENSGALG00000037301 6448 0.989 - - - - - - 0.989 - - - activin A receptor type 1 [Source:NCBI gene;Acc:395246]
32. FAM174A ENSGALG00000026203 8369 0.989 - - - - - - 0.989 - - - family with sequence similarity 174 member A [Source:HGNC Symbol;Acc:HGNC:24943]
33. RNF126 ENSGALG00000042948 4724 0.988 - - - - - - 0.988 - - - ring finger protein 126 [Source:NCBI gene;Acc:420085]
34. IFT57 ENSGALG00000015356 5540 0.988 - - - - - - 0.988 - - - intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
35. AMFR ENSGALG00000003107 6560 0.988 - - - - - - 0.988 - - - autocrine motility factor receptor [Source:HGNC Symbol;Acc:HGNC:463]
36. ANAPC2 ENSGALG00000008625 8822 0.988 - - - - - - 0.988 - - - anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
37. MEX3A ENSGALG00000014016 3692 0.988 - - - - - - 0.988 - - - mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482]
38. ZNF367 ENSGALG00000012629 3215 0.988 - - - - - - 0.988 - - - zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]
39. EIF3A ENSGALG00000009328 39982 0.988 - - - - - - 0.988 - - - eukaryotic translation initiation factor 3 subunit A [Source:HGNC Symbol;Acc:HGNC:3271]
40. FBXL21 ENSGALG00000006327 2910 0.987 - - - - - - 0.987 - - - F-box and leucine rich repeat protein 21 [Source:NCBI gene;Acc:416306]
41. TCF21 ENSGALG00000029024 8252 0.987 - - - - - - 0.987 - - - transcription factor 21 [Source:NCBI gene;Acc:421697]
42. CDH3 5050 0.987 - - - - - - 0.987 - - - cadherin 3
43. MAMDC2 ENSGALG00000015115 1512 0.987 - - - - - - 0.987 - - - MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673]
44. ZNF384 ENSGALG00000032599 2369 0.987 - - - - - - 0.987 - - - zinc finger protein 384 [Source:NCBI gene;Acc:770350]
45. SPAG1 ENSGALG00000033254 1370 0.986 - - - - - - 0.986 - - - sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
46. PPP2CA ENSGALG00000006462 26306 0.984 - - - - - - 0.984 - - - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
47. ZC3H15 ENSGALG00000041857 19808 0.983 - - - - - - 0.983 - - - zinc finger CCCH-type containing 15 [Source:NCBI gene;Acc:423992]
48. AKAP12 ENSGALG00000036240 64617 0.981 - - - - - - 0.981 - - - A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
49. THG1L ENSGALG00000003722 7497 0.974 - - - - - - 0.974 - - - tRNA-histidine guanylyltransferase 1 like [Source:NCBI gene;Acc:416242]
50. COX6A1 ENSGALG00000007205 72629 0.971 - - - - - - 0.971 - - - cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
51. ERLIN2 ENSGALG00000003092 18251 0.971 - - - - - - 0.971 - - - ER lipid raft associated 2 [Source:HGNC Symbol;Acc:HGNC:1356]
52. ERP29 ENSGALG00000023510 47100 0.967 - - - - - - - 0.967 - - endoplasmic reticulum protein 29 [Source:NCBI gene;Acc:416882]
53. LSM5 ENSGALG00000041625 22307 0.963 - - - - - - - 0.963 - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
54. ISY1 ENSGALG00000005012 7477 0.934 - - - - - - - 0.934 - - ISY1 splicing factor homolog
55. GREB1 ENSGALG00000016455 12794 0.928 - - - - - - - 0.928 - - growth regulating estrogen receptor binding 1 [Source:HGNC Symbol;Acc:HGNC:24885]
56. GTF3A ENSGALG00000017098 9264 0.921 - - - - - - - 0.921 - - general transcription factor IIIA [Source:NCBI gene;Acc:418931]
57. LIX1 ENSGALG00000015290 7589 0.918 - - - - - - - 0.918 - - limb and CNS expressed 1 [Source:NCBI gene;Acc:374264]
58. NDUFA9 ENSGALG00000017282 14358 0.917 - - - - - - - 0.917 - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
59. EHD3 ENSGALG00000009086 14407 0.913 - - - - - - - 0.913 - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
60. DRG1 ENSGALG00000006921 10791 0.911 - - - - - - - 0.911 - - developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
61. NUMA1 ENSGALG00000001258 8406 0.908 - - - - - - - 0.908 - - nuclear mitotic apparatus protein 1 [Source:NCBI gene;Acc:768717]
62. TUBB6 ENSGALG00000031275 17690 0.908 - - - - - - - 0.908 - - tubulin beta 6 class V [Source:NCBI gene;Acc:421037]
63. COMMD10 ENSGALG00000002308 7442 0.903 - - - - - - - 0.903 - - COMM domain containing 10 [Source:NCBI gene;Acc:427388]
64. KRR1 ENSGALG00000010227 11783 0.9 - - - - - - - 0.900 - - KRR1, small subunit processome component homolog [Source:NCBI gene;Acc:417863]
65. ZDHHC14 ENSGALG00000013695 2648 0.9 - - - - - - - 0.900 - - zinc finger DHHC-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20341]
66. C14orf1 C14orf1 14289 0.898 - - - - - - - 0.898 - -
67. PSMC3IP ENSGALG00000019741 5428 0.897 - - - - - - - 0.897 - - PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928]
68. ERP44 ENSGALG00000013452 5352 0.894 - - - - - - - 0.894 - - endoplasmic reticulum protein 44 [Source:HGNC Symbol;Acc:HGNC:18311]
69. COMT ENSGALG00000002024 2483 0.893 - - - - - - - 0.893 - - catechol-O-methyltransferase [Source:HGNC Symbol;Acc:HGNC:2228]
70. DCAF4 ENSGALG00000009345 2604 0.891 - - - - - - - 0.891 - - DDB1 and CUL4 associated factor 4
71. SGSM3 ENSGALG00000012033 1839 0.89 - - - - - - - 0.890 - - small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:25228]
72. AIF1L ENSGALG00000029834 13866 0.889 - - - - - - - 0.889 - - allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
73. ASAH1 ENSGALG00000026364 2783 0.887 - - - - - - - 0.887 - - N-acylsphingosine amidohydrolase (acid ceramidase) 1 [Source:NCBI gene;Acc:422727]
74. COMMD8 ENSGALG00000026279 13509 0.886 - - - - - - - 0.886 - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
75. KIF18B ENSGALG00000031553 3192 0.885 - - - - - - - 0.885 - - kinesin family member 18B [Source:NCBI gene;Acc:419968]
76. PI4K2B ENSGALG00000031538 2607 0.885 - - - - - - - 0.885 - - phosphatidylinositol 4-kinase type 2 beta [Source:NCBI gene;Acc:422807]
77. TUBB2B ENSGALG00000012821 41535 0.885 - - - - - - 0.885 - - - tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
78. EXOC8 ENSGALG00000043280 3596 0.882 - - - - - - - 0.882 - - exocyst complex component 8 [Source:NCBI gene;Acc:421531]
79. HGS ENSGALG00000007224 3487 0.882 - - - - - - - 0.882 - - hepatocyte growth factor-regulated tyrosine kinase substrate [Source:HGNC Symbol;Acc:HGNC:4897]
80. DDX54 ENSGALG00000007490 8729 0.88 - - - - - - - 0.880 - - DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]
81. FOCAD ENSGALG00000015071 3677 0.88 - - - - - - - 0.880 - - focadhesin [Source:NCBI gene;Acc:427233]
82. ADAT1 ENSGALG00000000908 1484 0.88 - - - - - - - 0.880 - - adenosine deaminase, tRNA specific 1 [Source:NCBI gene;Acc:415886]
83. ATP6V1C1 ENSGALG00000034099 9898 0.879 - - - - - - - 0.879 - - ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]
84. MAN2C1 ENSGALG00000001615 2362 0.878 - - - - - - - 0.878 - - mannosidase alpha class 2C member 1 [Source:NCBI gene;Acc:415306]
85. ZRANB2 ENSGALG00000011340 18994 0.878 - - - - - - - 0.878 - - zinc finger RANBP2-type containing 2 [Source:NCBI gene;Acc:424717]
86. CREG1 ENSGALG00000040426 1188 0.878 - - - - - - - 0.878 - - cellular repressor of E1A stimulated genes 1 [Source:NCBI gene;Acc:768680]
87. IQCK ENSGALG00000028197 596 0.877 - - - - - - - 0.877 - - IQ motif containing K [Source:HGNC Symbol;Acc:HGNC:28556]
88. KIF21A ENSGALG00000007098 5919 0.876 - - - - - - - 0.876 - - kinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]
89. ZNF207 ENSGALG00000003454 47086 0.875 - - - - - - 0.875 - - - zinc finger protein 207 [Source:HGNC Symbol;Acc:HGNC:12998]
90. SUMO3 ENSGALG00000032783 47823 0.875 - - - - 0.875 - - - - - small ubiquitin-like modifier 3 [Source:NCBI gene;Acc:770553]
91. NHLRC1 ENSGALG00000012688 1476 0.875 - - - - - - - 0.875 - - NHL repeat containing E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21576]
92. RFWD2 1215 0.874 - - - - - - - 0.874 - - ring finger and WD repeat domain 2, transcript variant X6
93. EIF3M ENSGALG00000012109 38661 0.874 - - - - - - - 0.874 - - eukaryotic translation initiation factor 3 subunit M [Source:NCBI gene;Acc:421602]
94. PIGQ ENSGALG00000001985 1584 0.874 - - - - - - - 0.874 - - phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
95. EI24 ENSGALG00000038097 24081 0.873 - - - - - - - 0.873 - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
96. DACT1 ENSGALG00000012023 1008 0.872 - - - - - - - 0.872 - - dishevelled binding antagonist of beta catenin 1 [Source:NCBI gene;Acc:723789]
97. TP73 ENSGALG00000001006 335 0.869 - - - - - - - 0.869 - - tumor protein p73 [Source:HGNC Symbol;Acc:HGNC:12003]
98. PALB2 ENSGALG00000006078 1549 0.868 - - - - - - - 0.868 - - partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:HGNC:26144]
99. RERE ENSGALG00000002232 8724 0.863 - - - - - - - 0.863 - - arginine-glutamic acid dipeptide repeats [Source:HGNC Symbol;Acc:HGNC:9965]
100. ATG3 ENSGALG00000015204 11277 0.86 - - - - - - - 0.860 - - autophagy related 3 [Source:NCBI gene;Acc:418369]

There are 117 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA