Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HOXA3

Gene Name Gene ID Reads Annotation
HOXA3 ENSGALG00000027925 4287 homeobox A3 [Source:HGNC Symbol;Acc:HGNC:5104]











Genes with expression patterns similar to HOXA3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HOXA3 ENSGALG00000027925 4287 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 homeobox A3 [Source:HGNC Symbol;Acc:HGNC:5104]
2. EP3 EP3 741 1.68 - - - - - - - - 0.839 0.841
3. PHF14 ENSGALG00000038041 13687 1.615 - - - - - - - 0.867 - 0.748 PHD finger protein 14 [Source:NCBI gene;Acc:420583]
4. TYSND1 ENSGALG00000033807 716 1.611 - - - - - - - - 0.812 0.799 trypsin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28531]
5. PPP2CA_1 ENSGALG00000006462 3170 1.586 - - - - - 0.788 - - 0.798 - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
6. DTWD2 ENSGALG00000002250 1604 1.581 - - - - - - 0.778 - 0.803 - DTW domain containing 2 [Source:NCBI gene;Acc:427386]
7. MCFD2 ENSGALG00000010017 8905 1.58 - - - - - - 0.760 - - 0.820 multiple coagulation factor deficiency 2 [Source:NCBI gene;Acc:421413]
8. ADARB1 ENSGALG00000007527 2480 1.58 - - - - - - - - 0.824 0.756 adenosine deaminase, RNA specific B1 [Source:NCBI gene;Acc:374087]
9. DAD1 ENSGALG00000035626 32604 1.574 - - - - - - 0.747 0.827 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
10. ASNS ENSGALG00000009748 11822 1.554 - - - - - - - 0.713 0.841 - asparagine synthetase (glutamine-hydrolyzing) [Source:NCBI gene;Acc:420574]
11. MID1 ENSGALG00000038504 1684 1.553 - - - - - - - 0.700 - 0.853 midline 1 [Source:NCBI gene;Acc:373920]
12. R3HDM1 ENSGALG00000012246 6580 1.535 - - - - - - 0.783 0.752 - - R3H domain containing 1 [Source:HGNC Symbol;Acc:HGNC:9757]
13. NOP16 ENSGALG00000003355 10692 1.534 - - - - - - 0.819 0.715 - - NOP16 nucleolar protein
14. STAT5 STAT5 1796 1.533 - - - - - 0.707 - - - 0.826
15. SNX7 ENSGALG00000005478 4736 1.531 - - - - - - 0.766 0.765 - - sorting nexin 7 [Source:HGNC Symbol;Acc:HGNC:14971]
16. STX6 3297 1.524 - - - - - - 0.718 - - 0.806 syntaxin 6
17. ANAPC1 ENSGALG00000008254 2519 1.52 - - - - - - 0.727 - - 0.793 anaphase promoting complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:19988]
18. HARS ENSGALG00000035080 11602 1.517 - - - - - - 0.750 0.767 - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
19. SETD3 ENSGALG00000034802 4125 1.517 - - - - - - 0.731 0.786 - - SET domain containing 3 [Source:NCBI gene;Acc:423445]
20. NDUFA12 ENSGALG00000011325 19807 1.515 - - - - - - 0.714 0.801 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
21. INTS8 ENSGALG00000037955 3349 1.505 - - - - - - - 0.703 - 0.802 integrator complex subunit 8 [Source:NCBI gene;Acc:420230]
22. ENSGALG00000014946 ENSGALG00000014946 40 1.504 - - - - - 0.740 - - 0.764 -
23. TRAPPC6B ENSGALG00000010157 7567 1.503 - - - - - - 0.735 0.768 - - trafficking protein particle complex 6B [Source:NCBI gene;Acc:423337]
24. DNM1L ENSGALG00000012929 6174 1.503 - - - - - - 0.792 0.711 - - dynamin 1 like [Source:NCBI gene;Acc:418132]
25. UTP18 ENSGALG00000002985 7129 1.5 - - - - - - - 0.782 0.718 - UTP18, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]
26. CHRAC1 ENSGALG00000040823 5695 1.5 - - - - - - 0.731 0.769 - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
27. CAPN15 ENSGALG00000002018 3353 1.499 - - - - - - - 0.724 - 0.775 calpain 15 [Source:HGNC Symbol;Acc:HGNC:11182]
28. TMX4 ENSGALG00000028587 3513 1.496 - - - - - - 0.728 0.768 - - thioredoxin related transmembrane protein 4 [Source:NCBI gene;Acc:416729]
29. MRPL50 ENSGALG00000015543 11649 1.47 - - - - - - 0.732 0.738 - - mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
30. RRP1B ENSGALG00000035696 12309 1.468 - - - - - - 0.736 0.732 - - ribosomal RNA processing 1B [Source:NCBI gene;Acc:425237]
31. DNAL4 ENSGALG00000043451 4469 1.468 - - - - - - 0.761 0.707 - - dynein axonemal light chain 4 [Source:NCBI gene;Acc:418019]
32. HOXA5 ENSGALG00000025929 6231 1.466 - - - - - - 0.755 0.711 - - homeobox A5 [Source:NCBI gene;Acc:100858404]
33. CEP70 ENSGALG00000012087 7992 1.462 - - - - - - - 0.736 0.726 - centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]
34. GTF3C4 ENSGALG00000031016 1221 1.462 - - - - - - 0.745 - 0.717 - general transcription factor IIIC subunit 4 [Source:HGNC Symbol;Acc:HGNC:4667]
35. BZW2 ENSGALG00000010809 29213 1.459 - - - - - - - 0.751 0.708 - basic leucine zipper and W2 domains 2 [Source:NCBI gene;Acc:420594]
36. C11H16ORF80 C11H16ORF80 18673 1.455 - - - - - - 0.718 0.737 - -
37. WDR3 ENSGALG00000014791 5856 1.452 - - - - - - 0.716 0.736 - - WD repeat domain 3 [Source:NCBI gene;Acc:427952]
38. PPP1CC ENSGALG00000004571 14748 1.448 - - - - - - 0.720 - - 0.728 protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
39. SIAH2 ENSGALG00000010395 2126 1.446 - - - - - - 0.704 - - 0.742 siah E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:10858]
40. WWC1 ENSGALG00000001826 4666 1.446 - - - - - - - 0.712 - 0.734 WW and C2 domain containing 1 [Source:NCBI gene;Acc:416167]
41. CHURC1 ENSGALG00000042309 12066 1.442 - - - - - - - 0.710 - 0.732 churchill domain containing 1 [Source:NCBI gene;Acc:395448]
42. FAM18B1 ENSGALG00000001335 5177 1.437 - - - - - - 0.715 0.722 - - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
43. FANCL ENSGALG00000030022 7423 1.421 - - - - - - 0.717 0.704 - - FA complementation group L [Source:NCBI gene;Acc:421202]
44. TET1 ENSGALG00000031604 13002 1.417 - - - - - - 0.704 - - 0.713 tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
45. PPP2R2A ENSGALG00000000235 4263 1.407 - - - - - - 0.706 0.701 - - protein phosphatase 2 regulatory subunit Balpha [Source:NCBI gene;Acc:419523]
46. GSTA GSTA 3130 0.892 - - - - - - - - 0.892 -
47. PACRG ENSGALG00000011560 67 0.89 - - - - - - - - 0.890 - parkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152]
48. ARHGEF4 ENSGALG00000002193 558 0.882 - - - - - - - - 0.882 - Rho guanine nucleotide exchange factor 4 [Source:HGNC Symbol;Acc:HGNC:684]
49. RHOGL ENSGALG00000005464, ENSGALG00000005475 5791 0.865 - - - - - - - 0.865 - - rho-related GTP-binding protein RhoG-like [Source:NCBI gene;Acc:422207]
50. OCIAD1 ENSGALG00000014081 12065 0.862 - - - - - - 0.862 - - - OCIA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16074]
51. LCMT1 ENSGALG00000005973 1300 0.862 - - - - - - - - 0.862 - leucine carboxyl methyltransferase 1 [Source:NCBI gene;Acc:416565]
52. FAM63B 3793 0.852 - - - - - - 0.852 - - - family with sequence similarity 63 member B
53. RTCB ENSGALG00000012611 14360 0.85 - - - - - - 0.850 - - - RNA 2',3'-cyclic phosphate and 5'-OH ligase [Source:HGNC Symbol;Acc:HGNC:26935]
54. CCDC173 358 0.848 - - - - - - - - 0.848 - coiled-coil domain containing 173
55. MCF2L2 ENSGALG00000008744 8 0.847 - - - - - 0.847 - - - - MCF.2 cell line derived transforming sequence-like 2 [Source:HGNC Symbol;Acc:HGNC:30319]
56. DCTD ENSGALG00000010674 8396 0.847 - - - - - - - 0.847 - - dCMP deaminase [Source:NCBI gene;Acc:422556]
57. ADCYAP1R1 ENSGALG00000005223 114 0.846 - - - - - - - - 0.846 - ADCYAP receptor type I [Source:NCBI gene;Acc:420386]
58. PUS1 ENSGALG00000002354 10153 0.844 - - - - - - - 0.844 - - pseudouridylate synthase 1 [Source:HGNC Symbol;Acc:HGNC:15508]
59. TAF3 ENSGALG00000006731 15569 0.842 - - - - - - 0.842 - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
60. PSMD13 ENSGALG00000043684 14720 0.842 - - - - - - - 0.842 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
61. COTL1 ENSGALG00000017644 81 0.842 - - - - - - - - 0.842 - coactosin like F-actin binding protein 1 [Source:NCBI gene;Acc:768420]
62. ATF7IP ENSGALG00000011814 1571 0.841 - - - - - - - - - 0.841 activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
63. ENSGALG00000013067 ENSGALG00000013067 10741 0.841 - - - - - - - 0.841 - -
64. EOMES ENSGALG00000027247 27 0.841 - - - - - 0.841 - - - - Gallus gallus eomesodermin (EOMES), mRNA. [Source:RefSeq mRNA;Acc:NM_001321555]
65. PTTG1 17936 0.839 - - - - - - 0.839 - - - pituitary tumor-transforming 1, transcript variant X1
66. COQ3 ENSGALG00000015486 3508 0.837 - - - - - - - 0.837 - - coenzyme Q3, methyltransferase [Source:HGNC Symbol;Acc:HGNC:18175]
67. IPO11 ENSGALG00000014740 4922 0.835 - - - - - - - 0.835 - - importin 11 [Source:HGNC Symbol;Acc:HGNC:20628]
68. TM4SF18 4553 0.831 - - - - - - - 0.831 - - transmembrane 4 L six family member 18, transcript variant X2
69. NHLRC2 ENSGALG00000008946 387 0.83 - - - - - - - - - 0.830 NHL repeat containing 2 [Source:NCBI gene;Acc:423903]
70. PIGA ENSGALG00000016559 5010 0.828 - - - - - - 0.828 - - - phosphatidylinositol glycan anchor biosynthesis class A [Source:NCBI gene;Acc:418624]
71. EIF5B ENSGALG00000016764 30681 0.827 - - - - - - - 0.827 - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
72. DNAH12 ENSGALG00000005601 80 0.827 - - - - - 0.827 - - - - dynein, axonemal, heavy chain 12, transcript variant X6
73. CASR ENSGALG00000038405 53 0.826 - - - - - 0.826 - - - - calcium sensing receptor [Source:HGNC Symbol;Acc:HGNC:1514]
74. AGO1 ENSGALG00000002249 125 0.825 - - - - - 0.825 - - - - argonaute 1, RISC catalytic component [Source:NCBI gene;Acc:428222]
75. KIAA1239 KIAA1239 263 0.825 - - - - - 0.825 - - - -
76. LY96 ENSGALG00000032701 18 0.825 - - - - - 0.825 - - - - lymphocyte antigen 96 [Source:HGNC Symbol;Acc:HGNC:17156]
77. ADAM10 ENSGALG00000004212 568 0.825 - - - - - - - - - 0.825 ADAM metallopeptidase domain 10 [Source:NCBI gene;Acc:374113]
78. PVALB1 PVALB1 267 0.825 - - - - - 0.825 - - - -
79. DPP10 ENSGALG00000012156 20 0.825 - - - - - 0.825 - - - - dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
80. ATP6V1AL ENSGALG00000000048 21 0.825 - - - - - 0.825 - - - - ATPase H+ transporting V1 subunit A-like, transcript variant X2
81. ALDH6A1 ENSGALG00000010211 29 0.825 - - - - - 0.825 - - - - aldehyde dehydrogenase 6 family member A1 [Source:HGNC Symbol;Acc:HGNC:7179]
82. SHPK ENSGALG00000004637 2386 0.825 - - - - - - - - - 0.825 sedoheptulokinase, transcript variant X1
83. GINS3 ENSGALG00000031209 32 0.825 - - - - - 0.825 - - - - GINS complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25851]
84. PPM1L ENSGALG00000009537 5 0.825 - - - - - 0.825 - - - - protein phosphatase, Mg2+/Mn2+ dependent 1L [Source:HGNC Symbol;Acc:HGNC:16381]
85. ENSGALG00000023485 ENSGALG00000023485 46 0.825 - - - - - 0.825 - - - -
86. PPIP5K1 ENSGALG00000008385 7 0.825 - - - - - 0.825 - - - - diphosphoinositol pentakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:29023]
87. FAM208B 24 0.825 - - - - - 0.825 - - - - family with sequence similarity 208 member B, transcript variant X3
88. PPFIA1 ENSGALG00000035774 5258 0.824 - - - - - - - 0.824 - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
89. SHC1 ENSGALG00000039775 219 0.824 - - - - - 0.824 - - - - SHC adaptor protein 1 [Source:NCBI gene;Acc:395934]
90. RAB11FIP2 ENSGALG00000009304 913 0.824 - - - - - - - - - 0.824 RAB11 family interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:29152]
91. KIAA1919 KIAA1919 58 0.823 - - - - - 0.823 - - - -
92. COL12A1 ENSGALG00000015908 1300 0.823 - - - - - - - - - 0.823 collagen type XII alpha 1 chain [Source:NCBI gene;Acc:395875]
93. MRPL2 ENSGALG00000008597 16500 0.823 - - - - - - - 0.823 - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]
94. TMEM199 ENSGALG00000023757 10781 0.823 - - - - - - - - - 0.823 transmembrane protein 199 [Source:HGNC Symbol;Acc:HGNC:18085]
95. SLC7A6 ENSGALG00000029324 427 0.821 - - - - - 0.821 - - - - solute carrier family 7 member 6 [Source:HGNC Symbol;Acc:HGNC:11064]
96. IMPA2 ENSGALG00000013814 4202 0.821 - - - - - - - - - 0.821 inositol monophosphatase 2 [Source:HGNC Symbol;Acc:HGNC:6051]
97. PCMTD2 ENSGALG00000005901 1833 0.821 - - - - - - - - - 0.821 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
98. RAB11A ENSGALG00000007615 9154 0.82 - - - - - - 0.820 - - - RAB11A, member RAS oncogene family [Source:NCBI gene;Acc:415544]
99. TLK1 ENSGALG00000009569 5446 0.82 - - - - - - - 0.820 - - tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
100. GMPPB ENSGALG00000002500 9454 0.82 - - - - - - 0.820 - - - GDP-mannose pyrophosphorylase B [Source:NCBI gene;Acc:415924]

There are 857 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA