Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HMGXB3

Gene Name Gene ID Reads Annotation
HMGXB3 ENSGALG00000005770 119 HMG-box containing 3 [Source:HGNC Symbol;Acc:HGNC:28982]











Genes with expression patterns similar to HMGXB3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HMGXB3 ENSGALG00000005770 119 8 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 HMG-box containing 3 [Source:HGNC Symbol;Acc:HGNC:28982]
2. FMR1 ENSGALG00000009177 561 1.758 - - - - - - - 0.910 0.848 - fragile X mental retardation 1 [Source:HGNC Symbol;Acc:HGNC:3775]
3. SKIL ENSGALG00000009356 335 1.712 - - - - - - - 0.931 0.781 - SKI like proto-oncogene [Source:NCBI gene;Acc:396087]
4. CPB1 ENSGALG00000006834 25 0.98 - - - - - - - 0.980 - - carboxypeptidase B1 [Source:NCBI gene;Acc:424888]
5. DHX58 ENSGALG00000023821 15 0.98 - - - - - - - 0.980 - - Gallus gallus DExH-box helicase 58 (DHX58), mRNA. [Source:RefSeq mRNA;Acc:NM_001318408]
6. ENSGALG00000018499 ENSGALG00000018499 100 0.98 - - - - - - - 0.980 - -
7. TAGAP ENSGALG00000013747 34 0.98 - - - - - - - 0.980 - - T cell activation RhoGTPase activating protein [Source:HGNC Symbol;Acc:HGNC:15669]
8. UBE3C ENSGALG00000006461 57 0.98 - - - - - - - 0.980 - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
9. KLF11 ENSGALG00000016440 65 0.98 - - - - - - - 0.980 - - Kruppel like factor 11 [Source:NCBI gene;Acc:421934]
10. gga-mir-454 ENSGALG00000033526 22 0.974 - - - - - - - 0.974 - - gga-mir-454 [Source:miRBase;Acc:MI0006984]
11. IRF-4 IRF-4 19 0.973 - - - - - - - 0.973 - -
12. PVALB1 PVALB1 267 0.963 - - - - - - - 0.963 - -
13. SH3GL1 ENSGALG00000001121 159 0.961 - - - - - - - 0.961 - - SH3 domain containing GRB2 like 1, endophilin A2 [Source:NCBI gene;Acc:395202]
14. PSTPIP2 ENSGALG00000040136 37 0.96 - - - - - - - 0.960 - - proline-serine-threonine phosphatase interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9581]
15. BTK ENSGALG00000004958 272 0.96 - - - - - - - 0.960 - - Bruton tyrosine kinase [Source:NCBI gene;Acc:374075]
16. HAGH ENSGALG00000005398 168 0.96 - - - - - - - 0.960 - - hydroxyacylglutathione hydrolase [Source:NCBI gene;Acc:416537]
17. SENP7 ENSGALG00000044642 48 0.958 - - - - - - - 0.958 - - SUMO specific peptidase 7 [Source:HGNC Symbol;Acc:HGNC:30402]
18. VIP ENSGALG00000013604 153 0.953 - - - - - - - 0.953 - - vasoactive intestinal peptide [Source:NCBI gene;Acc:396323]
19. ZDHHC20 ENSGALG00000017126 58 0.951 - - - - - - - 0.951 - - zinc finger DHHC-type containing 20 [Source:HGNC Symbol;Acc:HGNC:20749]
20. PPP2CA_1 ENSGALG00000006462 3170 0.949 - - - - - - - 0.949 - - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
21. PARM1 ENSGALG00000010268 13 0.946 - - - - - - - 0.946 - - prostate androgen-regulated mucin-like protein 1 [Source:HGNC Symbol;Acc:HGNC:24536]
22. FBXO22 ENSGALG00000039897 377 0.946 - - - - - - - 0.946 - - F-box protein 22 [Source:NCBI gene;Acc:415355]
23. VPS51 ENSGALG00000004166 204 0.939 - - - - - - - - 0.939 - VPS51, GARP complex subunit [Source:NCBI gene;Acc:422984]
24. EPC1 ENSGALG00000007169 101 0.935 - - - - - - - 0.935 - - enhancer of polycomb homolog 1 [Source:HGNC Symbol;Acc:HGNC:19876]
25. ATP11A ENSGALG00000041644 74 0.935 - - - - - - - 0.935 - - ATPase phospholipid transporting 11A [Source:HGNC Symbol;Acc:HGNC:13552]
26. SFI1 104 0.929 - - - - - - - 0.929 - - SFI1 centrin binding protein, transcript variant X6
27. PCASP2 ENSGALG00000027961 42 0.928 - - - - - - - 0.928 - - paracaspase 2 [Source:NCBI gene;Acc:429451]
28. SLC6A2 ENSGALG00000003560 108 0.927 - - - - - - - 0.927 - - solute carrier family 6 member 2 [Source:NCBI gene;Acc:395458]
29. MYO3A ENSGALG00000007647 643 0.927 - - - - - - - - 0.927 - myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
30. GALNT14 ENSGALG00000009078 126 0.926 - - - - - - - - 0.926 - polypeptide N-acetylgalactosaminyltransferase 14 [Source:HGNC Symbol;Acc:HGNC:22946]
31. CCDC73 ENSGALG00000012103 17 0.924 - - - - - - - 0.924 - - coiled-coil domain containing 73 [Source:HGNC Symbol;Acc:HGNC:23261]
32. MGEA5 116 0.923 - - - - - - - 0.923 - - meningioma expressed antigen 5 (hyaluronidase), transcript variant X1
33. SAMSN1 ENSGALG00000040926 88 0.921 - - - - - - - 0.921 - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
34. SACM1L ENSGALG00000040902 70 0.92 - - - - - - - 0.920 - - SAC1 like phosphatidylinositide phosphatase [Source:HGNC Symbol;Acc:HGNC:17059]
35. CYP2J22 ENSGALG00000011394 76 0.913 - - - - - - - 0.913 - - Gallus gallus cytochrome P450, family 2, subfamily J, polypeptide 22 (CYP2J22), mRNA. [Source:RefSeq mRNA;Acc:NM_001329480]
36. CYTIP ENSGALG00000012545 25 0.912 - - - - - - - 0.912 - - cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
37. ANKRD26 ENSGALG00000009104 71 0.905 - - - - - - - 0.905 - - ankyrin repeat domain 26 [Source:NCBI gene;Acc:417764]
38. TK1 ENSGALG00000007191 277 0.904 - - - - - - - 0.904 - - thymidine kinase 1 [Source:NCBI gene;Acc:395719]
39. GRPEL2 ENSGALG00000002673 105 0.904 - - - - - - - 0.904 - - GrpE like 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:21060]
40. IFT27 ENSGALG00000042990 221 0.902 - - - - - - - - 0.902 - intraflagellar transport 27 [Source:NCBI gene;Acc:418053]
41. DCT ENSGALG00000016899 37 0.901 - - - - - - - 0.901 - - dopachrome tautomerase [Source:NCBI gene;Acc:395775]
42. BPHL ENSGALG00000029659 501 0.901 - - - - - - - - 0.901 - biphenyl hydrolase like [Source:HGNC Symbol;Acc:HGNC:1094]
43. HS1BP3 ENSGALG00000016486 380 0.899 - - - - - - - - 0.899 - HCLS1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24979]
44. KIAA0232 ENSGALG00000015538 717 0.897 - - - - - - - - 0.897 - KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
45. LHFPL5 ENSGALG00000039170 247 0.891 - - - - - - - 0.891 - - LHFPL tetraspan subfamily member 5 [Source:NCBI gene;Acc:378916]
46. NCOA2 ENSGALG00000036017 256 0.89 - - - - - - - - 0.890 - nuclear receptor coactivator 2, transcript variant X9
47. PIK3CB ENSGALG00000005505 338 0.889 - - - - - - - 0.889 - - phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta [Source:NCBI gene;Acc:424826]
48. RBMS1 ENSGALG00000011132 569 0.888 - - - - - - - - 0.888 - RNA binding motif single stranded interacting protein 1 [Source:NCBI gene;Acc:395880]
49. IRF2 ENSGALG00000010642 923 0.888 - - - - - - - - 0.888 - interferon regulatory factor 2 [Source:NCBI gene;Acc:396115]
50. SETX ENSGALG00000003661 701 0.886 - - - - - - - - 0.886 - senataxin [Source:HGNC Symbol;Acc:HGNC:445]
51. KCNG3 ENSGALG00000009919 243 0.886 - - - - - - - 0.886 - - potassium voltage-gated channel modifier subfamily G member 3 [Source:HGNC Symbol;Acc:HGNC:18306]
52. PLXND1 ENSGALG00000008473 21 0.886 - - - - - - - 0.886 - - plexin D1 [Source:HGNC Symbol;Acc:HGNC:9107]
53. SVCT2 SVCT2 400 0.884 - - - - - - - 0.884 - -
54. TCP11L2 ENSGALG00000012658 1671 0.883 - - - - - - - - 0.883 - t-complex 11 like 2 [Source:NCBI gene;Acc:425052]
55. EGLN3 ENSGALG00000010001 32 0.879 - - - - - - - 0.879 - - egl-9 family hypoxia inducible factor 3 [Source:HGNC Symbol;Acc:HGNC:14661]
56. PIGF ENSGALG00000020057 201 0.877 - - - - - - - 0.877 - - phosphatidylinositol glycan anchor biosynthesis class F [Source:HGNC Symbol;Acc:HGNC:8962]
57. PDXK ENSGALG00000016205 26 0.876 - - - - - - - 0.876 - - pyridoxal kinase [Source:NCBI gene;Acc:418549]
58. PAM ENSGALG00000015256 3399 0.874 - - - - - - - - 0.874 - peptidylglycine alpha-amidating monooxygenase [Source:HGNC Symbol;Acc:HGNC:8596]
59. DNAJB14 ENSGALG00000014026 598 0.872 - - - - - - - - 0.872 - DnaJ heat shock protein family (Hsp40) member B14 [Source:NCBI gene;Acc:426362]
60. ZFC3H1 ENSGALG00000010177 1326 0.871 - - - - - - - 0.871 - - zinc finger C3H1-type containing [Source:HGNC Symbol;Acc:HGNC:28328]
61. EP4 EP4 486 0.868 - - - - - - - 0.868 - -
62. ITGB1BP2 ENSGALG00000005493 628 0.867 - - - - - - - 0.867 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
63. SRRD ENSGALG00000005614 234 0.866 - - - - - - - - 0.866 - SRR1 domain containing [Source:NCBI gene;Acc:416908]
64. VPS45 ENSGALG00000013899 154 0.865 - - - - - - - - 0.865 - vacuolar protein sorting 45 homolog [Source:NCBI gene;Acc:430741]
65. MFSD7 209 0.861 - - - - - - - 0.861 - - major facilitator superfamily domain containing 7, transcript variant X2
66. ZMYND10 ENSGALG00000035883 58 0.859 - - - - - - - 0.859 - - zinc finger MYND-type containing 10 [Source:HGNC Symbol;Acc:HGNC:19412]
67. DLL1 ENSGALG00000011182 1613 0.858 - - - - - - - 0.858 - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
68. GSTCD ENSGALG00000010573 1409 0.857 - - - - - - - - 0.857 - glutathione S-transferase C-terminal domain containing [Source:HGNC Symbol;Acc:HGNC:25806]
69. NIF3L1 ENSGALG00000008226 1500 0.855 - - - - - - - - 0.855 - NGG1 interacting factor 3 like 1 [Source:HGNC Symbol;Acc:HGNC:13390]
70. SNRK ENSGALG00000039920 174 0.852 - - - - - - - - 0.852 - SNF related kinase [Source:NCBI gene;Acc:420675]
71. CP ENSGALG00000030773 119 0.851 - - - - - - - 0.851 - - ceruloplasmin [Source:HGNC Symbol;Acc:HGNC:2295]
72. BCAN ENSGALG00000045469 51 0.849 - - - - - 0.849 - - - - brevican [Source:HGNC Symbol;Acc:HGNC:23059]
73. FGF12 ENSGALG00000036971 2631 0.848 - - - - - - - - 0.848 - fibroblast growth factor 12 [Source:NCBI gene;Acc:395704]
74. ASL1 ENSGALG00000002558 78 0.848 - - - - - - - 0.848 - - argininosuccinate lyase 1 [Source:NCBI gene;Acc:396498]
75. CBX1 ENSGALG00000033926 2436 0.848 - - - - - - - - 0.848 - chromobox 1 [Source:NCBI gene;Acc:374237]
76. AIDA ENSGALG00000009426 219 0.847 - - - - - - - - 0.847 - axin interactor, dorsalization associated [Source:NCBI gene;Acc:421335]
77. RAP1A ENSGALG00000001476 5287 0.846 - - - - - - - - 0.846 - RAP1A, member of RAS oncogene family
78. APP ENSGALG00000015770 9438 0.845 - - - - - - - - 0.845 - amyloid beta (A4) precursor protein [Source:NCBI gene;Acc:374198]
79. SLC35C1 ENSGALG00000008438 486 0.842 - - - - - - - 0.842 - - solute carrier family 35 member C1 [Source:NCBI gene;Acc:423203]
80. GPR180 ENSGALG00000016897 1545 0.842 - - - - - - - - 0.842 - G protein-coupled receptor 180 [Source:HGNC Symbol;Acc:HGNC:28899]
81. CWC22 ENSGALG00000009001 5984 0.84 - - - - - - - - 0.840 - CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
82. ASCC3 ENSGALG00000015465 259 0.839 - - - - - - - - 0.839 - activating signal cointegrator 1 complex subunit 3 [Source:NCBI gene;Acc:421790]
83. MKL1 3929 0.839 - - - - - - - 0.839 - - megakaryoblastic leukemia (translocation) 1, transcript variant X4
84. ENSGALG00000021611 ENSGALG00000021611 1551 0.838 - - - - - - - - 0.838 -
85. ZBTB34 ENSGALG00000023407 198 0.837 - - - - - - - 0.837 - - zinc finger and BTB domain containing 34 [Source:NCBI gene;Acc:417090]
86. RNF152 ENSGALG00000028822 291 0.837 - - - - - - - - 0.837 - ring finger protein 152 [Source:NCBI gene;Acc:420909]
87. DUSP10 ENSGALG00000009450 1041 0.835 - - - - - - - - 0.835 - dual specificity phosphatase 10 [Source:NCBI gene;Acc:421340]
88. SIAH3 ENSGALG00000026849 384 0.833 - - - - - - - 0.833 - - siah E3 ubiquitin protein ligase family member 3 [Source:HGNC Symbol;Acc:HGNC:30553]
89. MT-ND4L MT-ND4L 12537 0.833 - - - - - - - - 0.833 -
90. ADAM9 ENSGALG00000003398 1299 0.831 - - - - - - - - 0.831 - ADAM metallopeptidase domain 9 [Source:NCBI gene;Acc:426781]
91. GID8 ENSGALG00000005700 3992 0.829 - - - - - - - - 0.829 - GID complex subunit 8 homolog [Source:NCBI gene;Acc:419235]
92. LIMS1 ENSGALG00000029970 7244 0.829 - - - - - - - - 0.829 - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
93. MYL2_1 ENSGALG00000004582 2367 0.829 - - - - - - - 0.829 - - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
94. MAPK8IP3 ENSGALG00000029514 57 0.826 - - - - - - - - 0.826 - mitogen-activated protein kinase 8 interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:6884]
95. ITM2B ENSGALG00000016996 1112 0.824 - - - - - - - - 0.824 - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
96. ENOX2 ENSGALG00000004079 4055 0.823 - - - - - - - - 0.823 - ecto-NOX disulfide-thiol exchanger 2 [Source:NCBI gene;Acc:422142]
97. FILIP1L ENSGALG00000015271 644 0.823 - - - - - - - - 0.823 - filamin A interacting protein 1 like, transcript variant X8
98. ERO1LB ERO1LB 2910 0.823 - - - - - - - - 0.823 -
99. RNF207 2949 0.822 - - - - - - - - 0.822 - ring finger protein 207, transcript variant X1
100. FAT4 ENSGALG00000011823 774 0.821 - - - - - - - 0.821 - - FAT atypical cadherin 4 [Source:HGNC Symbol;Acc:HGNC:23109]

There are 231 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA