Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HMGN5

Gene Name Gene ID Reads Annotation
HMGN5 ENSGALG00000007131 171006 high mobility group nucleosome binding domain 5, transcript variant X1











Genes with expression patterns similar to HMGN5

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HMGN5 ENSGALG00000007131 171006 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group nucleosome binding domain 5, transcript variant X1
2. NUCKS1 ENSGALG00000000708 80882 1.717 0.853 - - - - - 0.864 - - - nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
3. RBBP6 ENSGALG00000006043 9708 1.591 0.853 0.738 - - - - - - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
4. PSMA7 ENSGALG00000030411 42436 1.556 0.771 - - - - - 0.785 - - - proteasome subunit alpha 7 [Source:NCBI gene;Acc:395318]
5. SURF6 ENSGALG00000038413 11178 1.552 0.809 - - - - 0.743 - - - - surfeit 6 [Source:NCBI gene;Acc:417160]
6. ANKRD11 ENSGALG00000006222 12327 1.527 0.800 0.727 - - - - - - - - ankyrin repeat domain 11, transcript variant X2
7. NSA2 ENSGALG00000014942 45193 0.871 - - - - - - 0.871 - - - NSA2, ribosome biogenesis homolog [Source:NCBI gene;Acc:427206]
8. AHCY ENSGALG00000033677 35555 0.848 - - - - - - 0.848 - - - adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
9. ATRX ENSGALG00000007843 34172 0.843 0.843 - - - - - - - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
10. HSP90AA1 ENSGALG00000033212 55740 0.841 - - - - - 0.841 - - - - heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
11. FN1 ENSGALG00000003578 37024 0.84 - - - - - - 0.840 - - - fibronectin 1 [Source:NCBI gene;Acc:396133]
12. THOC2 ENSGALG00000008507 9501 0.839 0.839 - - - - - - - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
13. HMGB1 ENSGALG00000042875 83509 0.829 0.829 - - - - - - - - - high mobility group box 1 [Source:NCBI gene;Acc:395724]
14. PSMD1 ENSGALG00000007664 7609 0.825 0.825 - - - - - - - - - proteasome 26S subunit, non-ATPase 1 [Source:NCBI gene;Acc:424926]
15. H3-IX_1 H3-IX_1 54392 0.819 0.819 - - - - - - - - -
16. PTGFRN ENSGALG00000015464 14584 0.816 0.816 - - - - - - - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
17. RPL19 ENSGALG00000001658 277294 0.811 - - - - - - 0.811 - - - ribosomal protein L19 [Source:NCBI gene;Acc:420003]
18. STMN2 ENSGALG00000039690 989 0.806 - - - - - 0.806 - - - - stathmin 2 [Source:NCBI gene;Acc:396095]
19. TRA2B ENSGALG00000006531 40566 0.804 - - - - - - 0.804 - - - transformer 2 beta homolog (Drosophila) [Source:NCBI gene;Acc:395403]
20. ANP32B ENSGALG00000037483 190705 0.802 - - - - - - 0.802 - - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
21. PPIG ENSGALG00000009839 24114 0.8 0.800 - - - - - - - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
22. EIF4H ENSGALG00000001313 59 0.797 - - - - - 0.797 - - - - eukaryotic translation initiation factor 4H [Source:NCBI gene;Acc:417490]
23. PPA2 ENSGALG00000010582 22301 0.797 - - - - - - - - - 0.797 pyrophosphatase (inorganic) 2 [Source:HGNC Symbol;Acc:HGNC:28883]
24. CBX3 ENSGALG00000011038 40977 0.794 - - - - - - 0.794 - - - chromobox 3 [Source:NCBI gene;Acc:395355]
25. SP3 ENSGALG00000031796 8997 0.793 0.793 - - - - - - - - - Sp3 transcription factor [Source:NCBI gene;Acc:395302]
26. ATF4 ENSGALG00000012135 53361 0.791 - - - - - - 0.791 - - - activating transcription factor 4 [Source:NCBI gene;Acc:395693]
27. DDX46 ENSGALG00000006404 8765 0.79 0.790 - - - - - - - - - DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
28. EIF5B ENSGALG00000016764 30681 0.79 0.790 - - - - - - - - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
29. TOP2A ENSGALG00000003922 7726 0.786 0.786 - - - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
30. MAP1B ENSGALG00000014999 6288 0.783 0.783 - - - - - - - - - microtubule associated protein 1B
31. CCAR1 ENSGALG00000004108 13219 0.782 0.782 - - - - - - - - - cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
32. UBE2C ENSGALG00000026380 27639 0.782 - - - - - - 0.782 - - - ubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]
33. FYTTD1 ENSGALG00000007581 9341 0.78 - - - - - - - - - 0.780 forty-two-three domain containing 1 [Source:NCBI gene;Acc:424921]
34. CWC15 ENSGALG00000017207 30922 0.78 - - - - - - 0.780 - - - CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
35. SRSF11 ENSGALG00000011305 10435 0.779 0.779 - - - - - - - - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
36. PABPC1 ENSGALG00000030280 23934 0.775 0.775 - - - - - - - - - poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]
37. RTF1 ENSGALG00000008595 31933 0.774 0.774 - - - - - - - - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996]
38. NKD1 ENSGALG00000003767 76 0.772 - - - - - 0.772 - - - - naked cuticle homolog 1 [Source:HGNC Symbol;Acc:HGNC:17045]
39. ZNF644 ENSGALG00000034253 28348 0.772 0.772 - - - - - - - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
40. RPL39 ENSGALG00000008620 63315 0.77 - - - - - - 0.770 - - - ribosomal protein L39 [Source:NCBI gene;Acc:374132]
41. KNOP1 ENSGALG00000002042 6251 0.767 0.767 - - - - - - - - - lysine-rich nucleolar protein 1, transcript variant X1
42. ENSGALG00000021694 ENSGALG00000021694 26011 0.766 - - - - - - 0.766 - - -
43. gga-mir-762 ENSGALG00000025437 24823 0.766 - - - - - - 0.766 - - - gga-mir-762 [Source:miRBase;Acc:MI0008209]
44. MTX2 ENSGALG00000009264 17304 0.765 - - - - - - 0.765 - - - metaxin 2 [Source:HGNC Symbol;Acc:HGNC:7506]
45. EEF1E1 ENSGALG00000012781 22615 0.765 - - - - - - 0.765 - - - eukaryotic translation elongation factor 1 epsilon 1
46. MBD3 ENSGALG00000001101 37265 0.765 0.765 - - - - - - - - - methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
47. SERBP1 ENSGALG00000011229 30489 0.763 0.763 - - - - - - - - - SERPINE1 mRNA binding protein 1 [Source:NCBI gene;Acc:424706]
48. AURKAIP1 ENSGALG00000001555 14715 0.762 - - - - - - 0.762 - - - aurora kinase A interacting protein 1 [Source:NCBI gene;Acc:419415]
49. USP10 ENSGALG00000005674 7768 0.761 0.761 - - - - - - - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
50. BRT-1 BRT-1 26083 0.759 - - - - - - 0.759 - - -
51. DDX24 ENSGALG00000010884 5485 0.759 0.759 - - - - - - - - - DEAD-box helicase 24 [Source:HGNC Symbol;Acc:HGNC:13266]
52. DYNLRB1 ENSGALG00000034509 28361 0.758 - - - - - - 0.758 - - - dynein light chain roadblock-type 1
53. MTDH ENSGALG00000034050 9525 0.757 0.757 - - - - - - - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
54. SNRNP48 ENSGALG00000013005 1468 0.757 - - - - - - - - - 0.757 small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
55. ANKRD17 ENSGALG00000011642 3192 0.757 0.757 - - - - - - - - - ankyrin repeat domain 17 [Source:HGNC Symbol;Acc:HGNC:23575]
56. CHMP4B ENSGALG00000002095 17422 0.757 - - - - - - 0.757 - - - charged multivesicular body protein 4B [Source:NCBI gene;Acc:419150]
57. RAB1A ENSGALG00000031582 6929 0.755 0.755 - - - - - - - - - RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]
58. ARID4A ENSGALG00000012037 8554 0.755 0.755 - - - - - - - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
59. KIF2A ENSGALG00000014737 16391 0.754 - - - - - - 0.754 - - - kinesin heavy chain member 2A [Source:NCBI gene;Acc:427156]
60. HISTH1 ENSGALG00000011747 16825 0.754 0.754 - - - - - - - - - histone H1
61. DNAJC10 ENSGALG00000008862 3114 0.753 0.753 - - - - - - - - - DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
62. SON ENSGALG00000035096 8654 0.753 0.753 - - - - - - - - - SON DNA binding protein, transcript variant X4
63. PRPF4B ENSGALG00000043751 8266 0.753 0.753 - - - - - - - - - pre-mRNA processing factor 4B [Source:HGNC Symbol;Acc:HGNC:17346]
64. PARP1 ENSGALG00000009228 39433 0.753 0.753 - - - - - - - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
65. SLTM ENSGALG00000004192 3244 0.751 0.751 - - - - - - - - - SAFB like transcription modulator [Source:HGNC Symbol;Acc:HGNC:20709]
66. USP16 ENSGALG00000015813 6803 0.75 0.750 - - - - - - - - - ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
67. BAZ2B ENSGALG00000012579 5525 0.75 0.750 - - - - - - - - - bromodomain adjacent to zinc finger domain 2B [Source:NCBI gene;Acc:395400]
68. PTCH1 ENSGALG00000012620 4840 0.749 - - - - - - - - - 0.749 patched 1 [Source:NCBI gene;Acc:395806]
69. ARCN1 ENSGALG00000007430 21499 0.748 - - - - - - 0.748 - - - archain 1 [Source:NCBI gene;Acc:770561]
70. ESF1 ENSGALG00000034768 8610 0.748 0.748 - - - - - - - - - ESF1 nucleolar pre-rRNA processing protein homolog [Source:NCBI gene;Acc:428551]
71. TCERG1 ENSGALG00000007528 6346 0.748 0.748 - - - - - - - - - transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
72. PDS5B ENSGALG00000017070 3998 0.746 - - - - - - - - - 0.746 PDS5 cohesin associated factor B [Source:NCBI gene;Acc:418910]
73. LOC427439 ENSGALG00000003605 9312 0.746 0.746 - - - - - - - - - Nipped-B homolog-like, transcript variant X1
74. PRRX1 ENSGALG00000003324 4859 0.745 - - - - - - 0.745 - - - paired related homeobox 1 [Source:NCBI gene;Acc:373941]
75. C1H21ORF33 ENSGALG00000019171 8910 0.745 - - - - - - 0.745 - - - chromosome 1 open reading frame, human C21orf33 [Source:NCBI gene;Acc:418552]
76. EEF2 ENSGALG00000033884 62036 0.745 0.745 - - - - - - - - - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
77. TDP2 ENSGALG00000013637 6595 0.745 - - - - - - 0.745 - - - tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]
78. HSPA14 ENSGALG00000035201 7372 0.745 - - - - - - 0.745 - - - heat shock protein family A (Hsp70) member 14
79. DHX36 ENSGALG00000043082 17619 0.744 - - - - - - 0.744 - - - DEAH-box helicase 36 [Source:HGNC Symbol;Acc:HGNC:14410]
80. NAP1L4 ENSGALG00000006446 10868 0.743 - - - - - - 0.743 - - - nucleosome assembly protein 1 like 4 [Source:NCBI gene;Acc:423087]
81. MAPKAPK2 ENSGALG00000000883 6174 0.743 - - - - - - 0.743 - - - mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]
82. MRPS27 ENSGALG00000015002 6541 0.742 - - - - - - 0.742 - - - mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:14512]
83. AP2M1 ENSGALG00000008432 16249 0.742 - - - - - - 0.742 - - - adaptor related protein complex 2 mu 1 subunit [Source:NCBI gene;Acc:770246]
84. ENSGALG00000001861 ENSGALG00000001861 10150 0.741 - - - - - - 0.741 - - -
85. THBS4 ENSGALG00000014804 4228 0.74 - - - - - - 0.740 - - - Gallus gallus thrombospondin 4 (THBS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001321549]
86. USP8 ENSGALG00000005894 4499 0.739 0.739 - - - - - - - - - ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:HGNC:12631]
87. ITSN1 ENSGALG00000036677 5727 0.739 0.739 - - - - - - - - - intersectin 1 [Source:HGNC Symbol;Acc:HGNC:6183]
88. RBM25 ENSGALG00000009332 10842 0.739 0.739 - - - - - - - - - RNA binding motif protein 25 [Source:NCBI gene;Acc:423250]
89. DNMT3B ENSGALG00000041461 12959 0.739 - - - - - - 0.739 - - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
90. KIAA0922 4430 0.739 - - - - - - 0.739 - - - KIAA0922, transcript variant X4
91. UTP14A ENSGALG00000024039 8532 0.737 - - - - - - 0.737 - - - UTP14A small subunit processome component
92. TUSC3 ENSGALG00000013674 2848 0.736 - - - - - - 0.736 - - - tumor suppressor candidate 3 [Source:HGNC Symbol;Acc:HGNC:30242]
93. RAP1GDS1 ENSGALG00000012222 10078 0.736 - - - - - - 0.736 - - - rap1 GTPase-GDP dissociation stimulator 1 [Source:NCBI gene;Acc:422701]
94. PIK3C2B ENSGALG00000037043 4522 0.736 - - - - - - 0.736 - - - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
95. WDYHV1 ENSGALG00000030059 2961 0.736 - - - - - - 0.736 - - - WDYHV motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25490]
96. ECE-1 ECE-1 3057 0.736 - - - - - - 0.736 - - -
97. NHP2L1 NHP2L1 12124 0.735 0.735 - - - - - - - - -
98. ROCK1 ENSGALG00000014922 4020 0.735 0.735 - - - - - - - - - Rho-associated, coiled-coil containing protein kinase 1 [Source:NCBI gene;Acc:373970]
99. PRRC2B 1997 0.735 - - - - - - 0.735 - - - proline rich coiled-coil 2B, transcript variant X12
100. SMC2 ENSGALG00000015691 34013 0.734 0.734 - - - - - - - - - structural maintenance of chromosomes 2 [Source:NCBI gene;Acc:396156]

There are 48 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA