Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HMGB3

Gene Name Gene ID Reads Annotation
HMGB3 ENSGALG00000009071 12011 high mobility group box 3 [Source:NCBI gene;Acc:396232]











Genes with expression patterns similar to HMGB3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HMGB3 ENSGALG00000009071 12011 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group box 3 [Source:NCBI gene;Acc:396232]
2. C4orf27 C4orf27 16724 2.557 - - - - 0.988 - 0.842 0.727 - -
3. AZIN1 ENSGALG00000029295 11085 2.395 - - - - 0.858 - 0.754 0.783 - - antizyme inhibitor 1 [Source:NCBI gene;Acc:420254]
4. MIB1 ENSGALG00000014974 3583 2.178 - - - - - - 0.704 0.761 - 0.713 mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
5. CCDC59 ENSGALG00000028648 9272 1.843 - - - - 0.993 - 0.850 - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
6. NSG1 ENSGALG00000015010 5829 1.759 - - - - 0.987 - - 0.772 - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
7. ESRP2 ENSGALG00000003374 4436 1.747 - - - - 0.981 - 0.766 - - - epithelial splicing regulatory protein 2 [Source:NCBI gene;Acc:415710]
8. MYEOV2 MYEOV2 5155 1.744 - - - - 0.993 - - 0.751 - -
9. TBRG4 ENSGALG00000038102 9269 1.735 - - - - 0.987 - - 0.748 - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
10. PGAM5 ENSGALG00000002137 7700 1.729 - - - - 0.986 - 0.743 - - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
11. SEC63 ENSGALG00000015308 11596 1.725 - - - - 0.972 - 0.753 - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
12. RAB21 ENSGALG00000010183 7718 1.723 - - - - 0.984 - - 0.739 - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
13. EPFIP1L ENSGALG00000007683 18050 1.721 - - - - 0.953 - 0.768 - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
14. UQCRC2 ENSGALG00000002490 23477 1.713 - - - - 0.984 - 0.729 - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
15. PPAPDC1B PPAPDC1B 6698 1.71 - - - - 0.991 - 0.719 - - -
16. MRPL22 ENSGALG00000003919 2760 1.709 - - - - 0.991 - 0.718 - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
17. NUP37 ENSGALG00000012759 9985 1.702 - - - - 0.985 - - 0.717 - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
18. MORN4 ENSGALG00000006149 7772 1.693 - - - - 0.980 - - 0.713 - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
19. VPS8 ENSGALG00000006704 5419 1.689 - - - - 0.984 - - 0.705 - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
20. ENSGALG00000026041 ENSGALG00000026041 13390 1.679 - - - - 0.962 - - 0.717 - -
21. CCNH ENSGALG00000015641 8051 1.652 - - - - - - 0.830 0.822 - - cyclin H [Source:HGNC Symbol;Acc:HGNC:1594]
22. RIOK2 ENSGALG00000015288 6280 1.612 - - - - - - 0.852 0.760 - - RIO kinase 2 [Source:NCBI gene;Acc:427278]
23. NDUFA12 ENSGALG00000011325 19807 1.609 - - - - - - 0.833 0.776 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
24. PSMB2 ENSGALG00000026421 51885 1.599 - - - - 0.815 - 0.784 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
25. MRPL41 ENSGALG00000008746 3833 1.577 - - - - - - 0.812 0.765 - - mitochondrial ribosomal protein L41 [Source:NCBI gene;Acc:417261]
26. RFC1 ENSGALG00000014298 6516 1.571 - - - - - - 0.809 0.762 - - replication factor C subunit 1 [Source:NCBI gene;Acc:422788]
27. XPO4 ENSGALG00000017132 2538 1.568 - - - - - - 0.824 0.744 - - exportin 4 [Source:NCBI gene;Acc:428081]
28. TBL3 ENSGALG00000005558 8363 1.559 - - - - - - 0.722 0.837 - - transducin beta like 3 [Source:NCBI gene;Acc:416545]
29. CNOT11 ENSGALG00000039563 11251 1.555 - - - - - - 0.808 0.747 - - CCR4-NOT transcription complex subunit 11
30. QTRTD1 QTRTD1 10765 1.547 - - - - - - 0.781 0.766 - -
31. C11H16ORF80 C11H16ORF80 18673 1.541 - - - - - - 0.730 0.811 - -
32. COX5A ENSGALG00000014121 55281 1.541 - - - - 0.828 - 0.713 - - - cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
33. TAF2 ENSGALG00000043193 6311 1.54 - - - - - - 0.768 0.772 - - TATA-box binding protein associated factor 2 [Source:NCBI gene;Acc:428389]
34. DCPS ENSGALG00000031143 10191 1.537 - - - - - - 0.829 0.708 - - decapping enzyme, scavenger [Source:HGNC Symbol;Acc:HGNC:29812]
35. EXOC2 ENSGALG00000012837 4914 1.524 - - - - - - 0.773 0.751 - - exocyst complex component 2 [Source:NCBI gene;Acc:420889]
36. RRP1B ENSGALG00000035696 12309 1.511 - - - - - - 0.772 0.739 - - ribosomal RNA processing 1B [Source:NCBI gene;Acc:425237]
37. MRPL47 ENSGALG00000013759 9044 1.509 - - - - - - 0.781 0.728 - - mitochondrial ribosomal protein L47 [Source:HGNC Symbol;Acc:HGNC:16652]
38. TFB2M ENSGALG00000010651 4374 1.507 - - - - - - 0.752 0.755 - - transcription factor B2, mitochondrial
39. SNX7 ENSGALG00000005478 4736 1.506 - - - - - - 0.726 0.780 - - sorting nexin 7 [Source:HGNC Symbol;Acc:HGNC:14971]
40. ORC3 ENSGALG00000015800 4316 1.5 - - - - - - 0.770 - - 0.730 origin recognition complex subunit 3 [Source:NCBI gene;Acc:421822]
41. CCNC ENSGALG00000015471 6497 1.499 - - - - - - 0.711 0.788 - - cyclin C [Source:NCBI gene;Acc:421791]
42. PCTP ENSGALG00000003099 5851 1.497 - - - - - - 0.796 0.701 - - phosphatidylcholine transfer protein [Source:HGNC Symbol;Acc:HGNC:8752]
43. RPAP3 ENSGALG00000009743 3380 1.495 - - - - - - 0.711 0.784 - - RNA polymerase II associated protein 3 [Source:NCBI gene;Acc:417811]
44. ZNF503 ENSGALG00000041935 2895 1.494 - - - - - - 0.727 0.767 - - zinc finger protein 503 [Source:HGNC Symbol;Acc:HGNC:23589]
45. DCUN1D4 ENSGALG00000014078 2393 1.488 - - - - - - 0.728 0.760 - - defective in cullin neddylation 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28998]
46. CCNDBP1 ENSGALG00000004837 11520 1.477 - - - - - - 0.731 0.746 - - cyclin D1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:1587]
47. IFRD1 ENSGALG00000009448 8865 1.476 - - - - - - 0.745 0.731 - - interferon related developmental regulator 1 [Source:NCBI gene;Acc:395226]
48. FANCL ENSGALG00000030022 7423 1.468 - - - - - - 0.704 0.764 - - FA complementation group L [Source:NCBI gene;Acc:421202]
49. SIPA1L1 ENSGALG00000009381 4019 1.467 - - - - - - 0.720 0.747 - - signal induced proliferation associated 1 like 1 [Source:NCBI gene;Acc:423255]
50. NFYB ENSGALG00000041193 6158 1.467 - - - - - - 0.716 0.751 - - nuclear transcription factor Y subunit beta [Source:NCBI gene;Acc:396205]
51. AKR7L ENSGALG00000004005 6040 1.457 - - - - - - 0.713 0.744 - - aldo-keto reductase family 7 like (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:24056]
52. CDK2AP1 ENSGALG00000034919 5469 1.453 - - - - - - 0.710 0.743 - - cyclin dependent kinase 2 associated protein 1 [Source:NCBI gene;Acc:416826]
53. SLC38A2 ENSGALG00000008497 3894 1.452 - - - - - - 0.713 0.739 - - solute carrier family 38 member 2 [Source:NCBI gene;Acc:417807]
54. SPCS1 ENSGALG00000001655 7718 1.451 - - - - - - 0.707 0.744 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
55. MPI ENSGALG00000029296 11781 1.449 - - - - - - 0.734 0.715 - - mannose phosphate isomerase [Source:HGNC Symbol;Acc:HGNC:7216]
56. PCNT ENSGALG00000007021 6428 1.442 - - - - - - 0.726 0.716 - - pericentrin [Source:HGNC Symbol;Acc:HGNC:16068]
57. PRPF4B ENSGALG00000043751 8266 1.442 - - - - - - 0.701 0.741 - - pre-mRNA processing factor 4B [Source:HGNC Symbol;Acc:HGNC:17346]
58. PPFIA1 ENSGALG00000035774 5258 1.441 - - - - - - 0.712 0.729 - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
59. CTSL2 CTSL2 7966 1.44 - - - - - - 0.730 0.710 - -
60. EIF2B4 ENSGALG00000033575 3801 1.439 - - - - - - 0.710 0.729 - - eukaryotic translation initiation factor 2B subunit delta [Source:HGNC Symbol;Acc:HGNC:3260]
61. ANAPC1 ENSGALG00000008254 2519 1.436 - - - - - - 0.715 0.721 - - anaphase promoting complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:19988]
62. GXYLT1 ENSGALG00000009532 5682 1.429 - - - - - - 0.700 0.729 - - glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
63. FTSJ3 ENSGALG00000032993 8929 1.425 - - - - - - 0.722 0.703 - - FtsJ RNA methyltransferase homolog 3 [Source:NCBI gene;Acc:419943]
64. GPR161 ENSGALG00000015247 3473 1.424 - - - - - - 0.716 0.708 - - G protein-coupled receptor 161 [Source:HGNC Symbol;Acc:HGNC:23694]
65. FAM63B 3793 1.409 - - - - - - 0.704 - - 0.705 family with sequence similarity 63 member B
66. LSG1 ENSGALG00000007058 4591 1.408 - - - - - - 0.703 0.705 - - large 60S subunit nuclear export GTPase 1 [Source:NCBI gene;Acc:424897]
67. EPB41L1 ENSGALG00000034171 3616 0.994 - - - - 0.994 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
68. NDST2 ENSGALG00000005107 4224 0.993 - - - - 0.993 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
69. IBA57 ENSGALG00000005328 4362 0.993 - - - - 0.993 - - - - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
70. USP1 ENSGALG00000010957 8297 0.993 - - - - 0.993 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
71. MED1 ENSGALG00000001708 9556 0.993 - - - - 0.993 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
72. MAP1B ENSGALG00000014999 6288 0.993 - - - - 0.993 - - - - - microtubule associated protein 1B
73. RNF113A ENSGALG00000000538 3985 0.992 - - - - 0.992 - - - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
74. gga-mir-6584 ENSGALG00000028834 1481 0.992 - - - - 0.992 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
75. BCL9 ENSGALG00000037655 4620 0.992 - - - - 0.992 - - - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
76. HTRA3 ENSGALG00000034673 512 0.992 - - - - 0.992 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
77. AGPAT3 ENSGALG00000031932 6903 0.992 - - - - 0.992 - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
78. ABCC1 ENSGALG00000006646 2596 0.992 - - - - 0.992 - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
79. RAE1 ENSGALG00000007653 8930 0.991 - - - - 0.991 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
80. HYOU1 ENSGALG00000007659 3555 0.991 - - - - 0.991 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
81. WHSC1L1 4065 0.991 - - - - 0.991 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
82. TMEM39B ENSGALG00000003287 4125 0.991 - - - - 0.991 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
83. PHKA1 ENSGALG00000004801 2510 0.991 - - - - 0.991 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
84. TBC1D7 ENSGALG00000012731 4891 0.991 - - - - 0.991 - - - - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
85. MRPL46 ENSGALG00000006782 5033 0.991 - - - - 0.991 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
86. TMEM18 ENSGALG00000028744 11779 0.99 - - - - 0.990 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
87. SEC61A2 ENSGALG00000036300 4235 0.99 - - - - 0.990 - - - - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
88. MRPS11 ENSGALG00000006777 16009 0.99 - - - - 0.990 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
89. TRIM33 ENSGALG00000001976 7404 0.989 - - - - 0.989 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
90. THBS1 ENSGALG00000009626 3521 0.989 - - - - 0.989 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
91. KCTD9 ENSGALG00000000275 3455 0.989 - - - - 0.989 - - - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
92. NOL6 ENSGALG00000030730 7191 0.989 - - - - 0.989 - - - - - nucleolar protein 6
93. DNAJC2 ENSGALG00000008249 28064 0.989 - - - - 0.989 - - - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
94. CENPE ENSGALG00000013208 12337 0.988 - - - - 0.988 - - - - - centromere protein E, transcript variant X4
95. C15H12ORF49 C15H12ORF49 13250 0.987 - - - - 0.987 - - - - -
96. OPTC ENSGALG00000003554 3698 0.987 - - - - 0.987 - - - - - opticin [Source:NCBI gene;Acc:395130]
97. TM2D2 ENSGALG00000003356 7088 0.986 - - - - 0.986 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
98. LUC7L2 ENSGALG00000036238 11817 0.986 - - - - 0.986 - - - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
99. RILPL2 ENSGALG00000003321 5632 0.985 - - - - 0.985 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
100. TNPO3 ENSGALG00000039420 5178 0.985 - - - - 0.985 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]

There are 836 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA