Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HMGB1

Gene Name Gene ID Reads Annotation
HMGB1 ENSGALG00000042875 83509 high mobility group box 1 [Source:NCBI gene;Acc:395724]











Genes with expression patterns similar to HMGB1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HMGB1 ENSGALG00000042875 83509 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group box 1 [Source:NCBI gene;Acc:395724]
2. ATRX ENSGALG00000007843 34172 2.401 0.889 0.741 0.771 - - - - - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
3. RBBP6 ENSGALG00000006043 9708 2.27 0.836 - 0.720 - - - - - - 0.714 RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
4. EEF2 ENSGALG00000033884 62036 2.249 0.782 0.728 - - 0.739 - - - - - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
5. ANKRD11 ENSGALG00000006222 12327 1.613 0.847 0.766 - - - - - - - - ankyrin repeat domain 11, transcript variant X2
6. TOP2A ENSGALG00000003922 7726 1.612 0.855 0.757 - - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
7. RDX ENSGALG00000017153 6734 1.529 0.819 0.710 - - - - - - - - radixin [Source:NCBI gene;Acc:395511]
8. NUCKS1 ENSGALG00000000708 80882 1.52 0.802 0.718 - - - - - - - - nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
9. BUB1B ENSGALG00000036892 2988 1.487 0.737 0.750 - - - - - - - - BUB1 mitotic checkpoint serine/threonine kinase B [Source:NCBI gene;Acc:378922]
10. PSMA7 ENSGALG00000030411 42436 1.485 0.721 - - - 0.764 - - - - - proteasome subunit alpha 7 [Source:NCBI gene;Acc:395318]
11. H3-IX_1 H3-IX_1 54392 1.477 0.722 - - - 0.755 - - - - -
12. VRK1 ENSGALG00000011116 4524 1.432 0.726 - - - - 0.706 - - - - vaccinia related kinase 1 [Source:NCBI gene;Acc:423443]
13. LOC419404 ENSGALG00000021676 12078 0.938 - - - - - - 0.938 - - - uncharacterized LOC419404
14. YWHAB ENSGALG00000004143 40276 0.872 - - - - - - 0.872 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta [Source:NCBI gene;Acc:419190]
15. THOC2 ENSGALG00000008507 9501 0.868 0.868 - - - - - - - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
16. COX4I1 68632 0.865 - - - - - - 0.865 - - - cytochrome c oxidase subunit 4I1, transcript variant X1
17. PTP4A1 ENSGALG00000016271 23953 0.861 - - - - - - 0.861 - - - protein tyrosine phosphatase type IVA, member 1 [Source:NCBI gene;Acc:421877]
18. PAPOLA ENSGALG00000033099 20532 0.86 - - - - - - 0.860 - - - poly(A) polymerase alpha [Source:NCBI gene;Acc:395878]
19. DHX15 ENSGALG00000014395 24041 0.86 - - - - - - 0.860 - - - DEAH-box helicase 15 [Source:NCBI gene;Acc:422813]
20. C5H11ORF58 C5H11ORF58 36659 0.858 - - - - - - 0.858 - - -
21. C5ORF13 C5ORF13 50177 0.858 - - - - - - 0.858 - - -
22. ENSGALG00000016007 ENSGALG00000016007 62448 0.855 - - - - - - 0.855 - - -
23. TOMM70A TOMM70A 24085 0.852 - - - - - - 0.852 - - -
24. UQCR11 ENSGALG00000001096 25245 0.852 - - - - - - 0.852 - - - ubiquinol-cytochrome c reductase, complex III subunit XI [Source:NCBI gene;Acc:770135]
25. GCSH ENSGALG00000032679 29231 0.852 - - - - - - 0.852 - - - glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
26. ALYREF ENSGALG00000007237 48479 0.851 - - - - - - 0.851 - - - Aly/REF export factor [Source:NCBI gene;Acc:769169]
27. UTRN ENSGALG00000012256 9980 0.847 - - - - - - 0.847 - - - utrophin [Source:HGNC Symbol;Acc:HGNC:12635]
28. PLK1 ENSGALG00000006110 12892 0.847 - - - - - - 0.847 - - - polo like kinase 1 [Source:NCBI gene;Acc:416575]
29. ENSGALG00000002595 ENSGALG00000002595 32163 0.847 - - - - - - 0.847 - - -
30. ATOX1 ENSGALG00000004176 16486 0.846 - - - - - - 0.846 - - - antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
31. DNAJC2 ENSGALG00000008249 28064 0.846 - - - - - - 0.846 - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
32. TXNRD3 ENSGALG00000039363 8016 0.845 - - - - - - 0.845 - - - thioredoxin reductase 3 [Source:NCBI gene;Acc:416031]
33. CCNG1 ENSGALG00000001718 9873 0.845 - - - - - - 0.845 - - - cyclin G1 [Source:HGNC Symbol;Acc:HGNC:1592]
34. FAM63A 8470 0.845 - - - - - - 0.845 - - - family with sequence similarity 63 member A, transcript variant X2
35. COQ9 ENSGALG00000001184 10174 0.844 - - - - - - 0.844 - - - coenzyme Q9 [Source:NCBI gene;Acc:415636]
36. CCDC85A ENSGALG00000043080 7624 0.844 - - - - - - 0.844 - - - coiled-coil domain containing 85A [Source:HGNC Symbol;Acc:HGNC:29400]
37. SFRP1 ENSGALG00000003473 5917 0.843 - - - - - - 0.843 - - - secreted frizzled related protein 1 [Source:NCBI gene;Acc:395237]
38. SUMO1 ENSGALG00000008435 19847 0.843 - - - - - - 0.843 - - - small ubiquitin-like modifier 1 [Source:NCBI gene;Acc:373930]
39. ITSN1 ENSGALG00000036677 5727 0.843 0.843 - - - - - - - - - intersectin 1 [Source:HGNC Symbol;Acc:HGNC:6183]
40. ZFP161 ZFP161 3538 0.842 - - - - - - 0.842 - - -
41. ETFA ENSGALG00000002925 24053 0.841 - - - - - - 0.841 - - - electron-transfer-flavoprotein, alpha polypeptide [Source:NCBI gene;Acc:415353]
42. EIF5B ENSGALG00000016764 30681 0.84 0.840 - - - - - - - - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
43. ENSGALG00000007210 ENSGALG00000007210 2203 0.839 - - - - - - 0.839 - - -
44. FIG4 ENSGALG00000015070 3018 0.839 - - - - - - 0.839 - - - FIG4 phosphoinositide 5-phosphatase [Source:NCBI gene;Acc:421762]
45. LGALS3 ENSGALG00000012173 3306 0.839 - - - - - - 0.839 - - - galectin 3 [Source:NCBI gene;Acc:373917]
46. GSTA GSTA 3130 0.838 - - - - - - 0.838 - - -
47. MTDH ENSGALG00000034050 9525 0.832 0.832 - - - - - - - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
48. PAK1IP1 ENSGALG00000012724 10907 0.831 - - - - - - 0.831 - - - PAK1 interacting protein 1 [Source:NCBI gene;Acc:420850]
49. HMGN5 ENSGALG00000007131 171006 0.829 0.829 - - - - - - - - - high mobility group nucleosome binding domain 5, transcript variant X1
50. ZC3H14 ENSGALG00000010622 7024 0.828 - - - - - - - 0.828 - - zinc finger CCCH-type containing 14 [Source:NCBI gene;Acc:423399]
51. PSMD1 ENSGALG00000007664 7609 0.825 0.825 - - - - - - - - - proteasome 26S subunit, non-ATPase 1 [Source:NCBI gene;Acc:424926]
52. TCERG1 ENSGALG00000007528 6346 0.825 0.825 - - - - - - - - - transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
53. NOL6 ENSGALG00000030730 7191 0.823 - - - - - - 0.823 - - - nucleolar protein 6
54. ANKRD17 ENSGALG00000011642 3192 0.821 0.821 - - - - - - - - - ankyrin repeat domain 17 [Source:HGNC Symbol;Acc:HGNC:23575]
55. DDX46 ENSGALG00000006404 8765 0.82 0.820 - - - - - - - - - DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
56. SRSF11 ENSGALG00000011305 10435 0.819 0.819 - - - - - - - - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
57. HISTH1 ENSGALG00000011747 16825 0.819 0.819 - - - - - - - - - histone H1
58. PPIG ENSGALG00000009839 24114 0.815 0.815 - - - - - - - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
59. Sep-09 Sep-09 4723 0.815 - - 0.815 - - - - - - -
60. SURF6 ENSGALG00000038413 11178 0.815 0.815 - - - - - - - - - surfeit 6 [Source:NCBI gene;Acc:417160]
61. SLC25A6 ENSGALG00000016691 76738 0.813 - - - - 0.813 - - - - - solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
62. SEPT9 ENSGALG00000040244 6570 0.81 0.810 - - - - - - - - - septin 9 [Source:NCBI gene;Acc:417347]
63. PSMB2 ENSGALG00000026421 51885 0.809 - - - - 0.809 - - - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
64. NAP1L1 ENSGALG00000010238 14506 0.803 0.803 - - - - - - - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
65. DDX3X ENSGALG00000016231 54230 0.801 - - - - - - - 0.801 - - DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
66. SLTM ENSGALG00000004192 3244 0.797 0.797 - - - - - - - - - SAFB like transcription modulator [Source:HGNC Symbol;Acc:HGNC:20709]
67. SMARCC1 ENSGALG00000032642 4842 0.795 0.795 - - - - - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
68. RAB1A ENSGALG00000031582 6929 0.795 0.795 - - - - - - - - - RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]
69. AKAP9 ENSGALG00000040724 7446 0.791 0.791 - - - - - - - - - A-kinase anchoring protein 9 [Source:NCBI gene;Acc:395695]
70. ESF1 ENSGALG00000034768 8610 0.79 0.790 - - - - - - - - - ESF1 nucleolar pre-rRNA processing protein homolog [Source:NCBI gene;Acc:428551]
71. PKP4 ENSGALG00000012561 3087 0.789 0.789 - - - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
72. gga-mir-3526 ENSGALG00000029121 41375 0.789 - - - - - - 0.789 - - - gga-mir-3526 [Source:miRBase;Acc:MI0015377]
73. PABPC1 ENSGALG00000030280 23934 0.787 0.787 - - - - - - - - - poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]
74. SMC2 ENSGALG00000015691 34013 0.785 0.785 - - - - - - - - - structural maintenance of chromosomes 2 [Source:NCBI gene;Acc:396156]
75. SUCLG1 ENSGALG00000015961 14323 0.784 - - - - - - 0.784 - - - succinate-CoA ligase alpha subunit [Source:NCBI gene;Acc:422932]
76. PRPF40A ENSGALG00000012526 7724 0.784 0.784 - - - - - - - - - pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
77. C5orf24 ENSGALG00000006371 1573 0.782 0.782 - - - - - - - - - chromosome 5 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:26746]
78. RBM25 ENSGALG00000009332 10842 0.781 0.781 - - - - - - - - - RNA binding motif protein 25 [Source:NCBI gene;Acc:423250]
79. LOC427439 ENSGALG00000003605 9312 0.781 0.781 - - - - - - - - - Nipped-B homolog-like, transcript variant X1
80. DNAJC10 ENSGALG00000008862 3114 0.78 0.780 - - - - - - - - - DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
81. GLRX3 ENSGALG00000010464 22578 0.777 - - - - - - - - - 0.777 glutaredoxin 3 [Source:NCBI gene;Acc:423968]
82. MAP1B ENSGALG00000014999 6288 0.776 0.776 - - - - - - - - - microtubule associated protein 1B
83. ASUN ASUN 17129 0.775 - - - - - - - 0.775 - -
84. BOD1L1 ENSGALG00000026470 9250 0.773 0.773 - - - - - - - - - biorientation of chromosomes in cell division 1 like 1 [Source:HGNC Symbol;Acc:HGNC:31792]
85. SCAF11 ENSGALG00000028849 2603 0.771 0.771 - - - - - - - - - SR-related CTD-associated factor 11 [Source:NCBI gene;Acc:417805]
86. COX5A ENSGALG00000014121 55281 0.771 - - - - 0.771 - - - - - cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
87. SP3 ENSGALG00000031796 8997 0.768 0.768 - - - - - - - - - Sp3 transcription factor [Source:NCBI gene;Acc:395302]
88. TCOF1 ENSGALG00000005535 24554 0.766 - - - - - - 0.766 - - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
89. USP16 ENSGALG00000015813 6803 0.766 0.766 - - - - - - - - - ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
90. PMPCB ENSGALG00000008280 6357 0.766 - - - - - - - - - 0.766 peptidase, mitochondrial processing beta subunit [Source:NCBI gene;Acc:417718]
91. SF3B1 ENSGALG00000008038 30161 0.765 - - - - - - 0.765 - - - splicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]
92. SLC25A30 ENSGALG00000016979 2625 0.763 - - - - - - - 0.763 - - solute carrier family 25 member 30 [Source:HGNC Symbol;Acc:HGNC:27371]
93. PRPF4B ENSGALG00000043751 8266 0.763 0.763 - - - - - - - - - pre-mRNA processing factor 4B [Source:HGNC Symbol;Acc:HGNC:17346]
94. CAPZA1 ENSGALG00000001547 24242 0.763 0.763 - - - - - - - - - capping actin protein of muscle Z-line alpha subunit 1 [Source:NCBI gene;Acc:396521]
95. PTGFRN ENSGALG00000015464 14584 0.762 0.762 - - - - - - - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
96. EIF2S1 ENSGALG00000009565 63906 0.761 - - - - - - - 0.761 - - eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
97. ZNF644 ENSGALG00000034253 28348 0.758 0.758 - - - - - - - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
98. BPTF ENSGALG00000038222 7521 0.752 0.752 - - - - - - - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
99. RTF1 ENSGALG00000008595 31933 0.752 0.752 - - - - - - - - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996]
100. TMEM115 ENSGALG00000026965 13050 0.751 - - - - - - - 0.751 - - transmembrane protein 115 [Source:HGNC Symbol;Acc:HGNC:30055]

There are 64 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA