Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HMG20A

Gene Name Gene ID Reads Annotation
HMG20A ENSGALG00000041641 5818 high mobility group 20A [Source:NCBI gene;Acc:415346]











Genes with expression patterns similar to HMG20A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HMG20A ENSGALG00000041641 5818 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 high mobility group 20A [Source:NCBI gene;Acc:415346]
2. MRPL55 5995 1.478 - - - - - - 0.711 0.767 - - mitochondrial ribosomal protein L55
3. ACAD11 ENSGALG00000035949 5483 0.82 - - - - - - - 0.820 - - acyl-CoA dehydrogenase family member 11 [Source:NCBI gene;Acc:420689]
4. HERC2 ENSGALG00000016739 9900 0.796 - - - - - - 0.796 - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:418682]
5. TARDBP ENSGALG00000002906 24748 0.793 - - - - - - 0.793 - - - TAR DNA binding protein [Source:NCBI gene;Acc:419453]
6. TBCD ENSGALG00000001503 7880 0.787 - - - - - - 0.787 - - - tubulin folding cofactor D [Source:NCBI gene;Acc:417334]
7. NENF ENSGALG00000009821 4826 0.786 - - - - - - - 0.786 - - neudesin neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:30384]
8. C1orf198 ENSGALG00000026600 5651 0.781 - - - - - - - 0.781 - - chromosome 1 open reading frame 198 [Source:HGNC Symbol;Acc:HGNC:25900]
9. YME1L1 ENSGALG00000007492 8652 0.78 - - - - - - - 0.780 - - YME1 like 1 ATPase [Source:NCBI gene;Acc:428418]
10. CSNK1G1 ENSGALG00000030812 31618 0.78 - - - - - - 0.780 - - - casein kinase 1 gamma 1 [Source:NCBI gene;Acc:415328]
11. MRPS30 ENSGALG00000014874 3416 0.778 - - - - - - 0.778 - - - mitochondrial ribosomal protein S30 [Source:NCBI gene;Acc:395781]
12. PTRHD1 ENSGALG00000016610 3636 0.778 - - - - - - - 0.778 - - peptidyl-tRNA hydrolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:33782]
13. GPN3 ENSGALG00000003807 6320 0.774 - - - - - - - 0.774 - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
14. USP28 ENSGALG00000006969 2645 0.772 - - - - - - 0.772 - - - ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]
15. C17H9ORF16 C17H9ORF16 7908 0.772 - - - - - - 0.772 - - -
16. POLR1B ENSGALG00000032273 3845 0.77 - - - - - - 0.770 - - - RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]
17. DHDDS ENSGALG00000029909 2229 0.769 - - - - - - - 0.769 - - dehydrodolichyl diphosphate synthase subunit [Source:HGNC Symbol;Acc:HGNC:20603]
18. PBRM1 ENSGALG00000037455 6450 0.769 - - - - - - - 0.769 - - polybromo 1 [Source:NCBI gene;Acc:396074]
19. APITD1 APITD1 11830 0.768 - - - - - - - 0.768 - -
20. NEK6 ENSGALG00000001118 20333 0.765 - - - - - - 0.765 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
21. PIK3IP1 ENSGALG00000006942 8388 0.763 - - - - - - 0.763 - - - phosphoinositide-3-kinase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:24942]
22. RAB33B ENSGALG00000009790 2340 0.763 - - - - - - 0.763 - - - RAB33B, member RAS oncogene family [Source:NCBI gene;Acc:422441]
23. gga-mir-6587 ENSGALG00000026386 9441 0.762 - - - - - - 0.762 - - - gga-mir-6587 [Source:miRBase;Acc:MI0022407]
24. LYPLA2 ENSGALG00000004002 3939 0.761 - - - - - - 0.761 - - - lysophospholipase II [Source:NCBI gene;Acc:419685]
25. IGBP1 ENSGALG00000044628 9200 0.76 - - - - - - 0.760 - - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
26. TIA1 ENSGALG00000013879 16330 0.759 - - - - - - 0.759 - - - TIA1 cytotoxic granule associated RNA binding protein [Source:NCBI gene;Acc:771327]
27. VBP1 VBP1 14482 0.758 - - - - - - 0.758 - - -
28. WSB2 ENSGALG00000008151 13246 0.756 - - - - - - - 0.756 - - WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
29. DDX19B ENSGALG00000039967 49600 0.756 - - - - - - 0.756 - - - ATP-dependent RNA helicase DDX19B [Source:NCBI gene;Acc:426504]
30. SAR1B ENSGALG00000038753 6493 0.754 - - - - - - 0.754 - - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
31. LSM5 ENSGALG00000041625 22307 0.754 - - - - - - 0.754 - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
32. ENSGALG00000007514 ENSGALG00000007514 4866 0.753 - - - - - - - 0.753 - -
33. NAV2 ENSGALG00000003999 6587 0.753 - - - - - - 0.753 - - - neuron navigator 2 [Source:HGNC Symbol;Acc:HGNC:15997]
34. EPFIP1L ENSGALG00000007683 18050 0.753 - - - - - - 0.753 - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
35. PSPC1 ENSGALG00000017142 13036 0.752 - - - - - - 0.752 - - - paraspeckle component 1 [Source:NCBI gene;Acc:418955]
36. PLRG1 ENSGALG00000009257 8613 0.751 - - - - - - 0.751 - - - pleiotropic regulator 1 [Source:HGNC Symbol;Acc:HGNC:9089]
37. CABIN1 ENSGALG00000006363 4415 0.75 - - - - - - 0.750 - - - calcineurin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24187]
38. N-RAS N-RAS 5787 0.75 - - - - - - 0.750 - - -
39. SEMA4B ENSGALG00000008297 11202 0.749 - - - - - - - 0.749 - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
40. SLC16A10 ENSGALG00000015040 1236 0.746 - - - - - - - 0.746 - - Gallus gallus solute carrier family 16 member 10 (SLC16A10), mRNA. [Source:RefSeq mRNA;Acc:NM_001321736]
41. DHX33 ENSGALG00000001630 7783 0.745 - - - - - - - 0.745 - - DEAH-box helicase 33 [Source:HGNC Symbol;Acc:HGNC:16718]
42. PPAPDC1B PPAPDC1B 6698 0.745 - - - - - - 0.745 - - -
43. PTGFRN ENSGALG00000015464 14584 0.744 - - - - - - 0.744 - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
44. PSMB2 ENSGALG00000026421 51885 0.744 - - - - - - 0.744 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
45. XRN2 ENSGALG00000008372 22164 0.743 - - - - - - 0.743 - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
46. MPI ENSGALG00000029296 11781 0.741 - - - - - - - 0.741 - - mannose phosphate isomerase [Source:HGNC Symbol;Acc:HGNC:7216]
47. TRAF7 ENSGALG00000005767 4615 0.741 - - - - - - 0.741 - - - TNF receptor associated factor 7 [Source:NCBI gene;Acc:416555]
48. URI1 ENSGALG00000004506 6024 0.74 - - - - - - 0.740 - - - URI1, prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:13236]
49. RAB10 ENSGALG00000016535 5272 0.74 - - - - - - 0.740 - - - RAB10, member RAS oncogene family [Source:NCBI gene;Acc:421994]
50. UBE2D1 ENSGALG00000021213 5876 0.738 - - - - - - 0.738 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
51. NOC4L ENSGALG00000002272 9644 0.737 - - - - - - 0.737 - - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
52. PGM1 ENSGALG00000011016 3391 0.736 - - - - - - - - - 0.736 phosphoglucomutase 1 [Source:NCBI gene;Acc:424691]
53. PSMB3 ENSGALG00000001597 22588 0.734 - - - - - - - - 0.734 - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]
54. ATP6AP1 ENSGALG00000008836 4343 0.732 - - - - - - 0.732 - - - ATPase H+ transporting accessory protein 1 [Source:NCBI gene;Acc:427854]
55. SMG1 ENSGALG00000006829 1875 0.732 - - - - - - - 0.732 - - SMG1, nonsense mediated mRNA decay associated PI3K related kinase [Source:HGNC Symbol;Acc:HGNC:30045]
56. TMEM183A ENSGALG00000000223 6915 0.732 - - - - - - 0.732 - - - transmembrane protein 183A [Source:NCBI gene;Acc:421156]
57. RNPS1 ENSGALG00000009288 13588 0.731 - - - - - - 0.731 - - - RNA binding protein with serine rich domain 1 [Source:HGNC Symbol;Acc:HGNC:10080]
58. HMGCS1 ENSGALG00000014862 2846 0.731 - - - - - - 0.731 - - - 3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:NCBI gene;Acc:396379]
59. MED24 ENSGALG00000013506 5403 0.731 - - - - - - 0.731 - - - mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
60. RPF2 ENSGALG00000037087 12788 0.73 - - - - - - 0.730 - - - ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]
61. USP7 ENSGALG00000007307 2973 0.73 - - - - - - - 0.730 - - ubiquitin specific peptidase 7 [Source:NCBI gene;Acc:395126]
62. MED9 ENSGALG00000031214 10779 0.73 - - - - - - 0.730 - - - mediator complex subunit 9 [Source:NCBI gene;Acc:416506]
63. METTL11A METTL11A 11876 0.729 - - - - - - - 0.729 - -
64. DOHH ENSGALG00000017524 9420 0.729 - - - - - - - 0.729 - - deoxyhypusine hydroxylase [Source:NCBI gene;Acc:427066]
65. AP2A2 ENSGALG00000006799 13874 0.729 - - - - - - 0.729 - - - adaptor related protein complex 2 subunit alpha 2 [Source:NCBI gene;Acc:423102]
66. CHMP6 ENSGALG00000026428 18026 0.729 - - - - - - 0.729 - - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
67. ASH2L ENSGALG00000003233 4814 0.728 - - - - - - - 0.728 - - ASH2 like, histone lysine methyltransferase complex subunit [Source:NCBI gene;Acc:426774]
68. CNOT11 ENSGALG00000039563 11251 0.728 - - - - - - 0.728 - - - CCR4-NOT transcription complex subunit 11
69. HOMER3_1 ENSGALG00000003058, ENSGALG00000003074 1364 0.728 - - - - - - - 0.728 - - homer scaffolding protein 3, transcript variant X4
70. UBR2 ENSGALG00000009906 7717 0.728 - - - - - - 0.728 - - - ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:HGNC:21289]
71. NMT1 ENSGALG00000000857 5770 0.727 - - - - - - 0.727 - - - N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7857]
72. CDC42BPB ENSGALG00000011432 8220 0.727 - - - - - - - 0.727 - - CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
73. EIF2B4 ENSGALG00000033575 3801 0.727 - - - - - - 0.727 - - - eukaryotic translation initiation factor 2B subunit delta [Source:HGNC Symbol;Acc:HGNC:3260]
74. MED19 ENSGALG00000007341 4913 0.727 - - - - - - 0.727 - - - mediator complex subunit 19 [Source:HGNC Symbol;Acc:HGNC:29600]
75. RANBP9 ENSGALG00000012696 4871 0.726 - - - - - - - 0.726 - - RAN binding protein 9 [Source:HGNC Symbol;Acc:HGNC:13727]
76. VIMENTIN VIMENTIN 33105 0.726 - - - - - - 0.726 - - -
77. EVL ENSGALG00000011209 5440 0.725 - - - - - - 0.725 - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
78. PARS2 ENSGALG00000010789 2932 0.724 - - - - - - - 0.724 - - prolyl-tRNA synthetase 2, mitochondrial (putative) [Source:NCBI gene;Acc:424659]
79. TRAPPC2 ENSGALG00000016578 8749 0.724 - - - - - - 0.724 - - - trafficking protein particle complex 2 [Source:NCBI gene;Acc:418634]
80. GLRX3 ENSGALG00000010464 22578 0.724 - - - - - - 0.724 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
81. LIMD1 ENSGALG00000035623 7282 0.724 - - - - - - 0.724 - - - LIM domains containing 1 [Source:HGNC Symbol;Acc:HGNC:6612]
82. UQCRC1 ENSGALG00000005789 23201 0.723 - - - - - - 0.723 - - - ubiquinol-cytochrome c reductase core protein 1 [Source:HGNC Symbol;Acc:HGNC:12585]
83. BET1L ENSGALG00000004172 5305 0.723 - - - - - - 0.723 - - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
84. TMEM70 ENSGALG00000033568 10720 0.723 - - - - - - 0.723 - - - transmembrane protein 70 [Source:NCBI gene;Acc:420188]
85. SPEN ENSGALG00000036932 9688 0.722 - - - - - - 0.722 - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
86. COX17 ENSGALG00000014981 5646 0.721 - - - - - - - 0.721 - - COX17, cytochrome c oxidase copper chaperone [Source:NCBI gene;Acc:770190]
87. TPRKB ENSGALG00000013018 8687 0.721 - - - - - - 0.721 - - - TP53RK binding protein [Source:HGNC Symbol;Acc:HGNC:24259]
88. DGCR2 ENSGALG00000005891 8405 0.72 - - - - - - 0.720 - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
89. NDUFS5 ENSGALG00000003625 27698 0.72 - - - - - - - 0.720 - - NADH:ubiquinone oxidoreductase subunit S5 [Source:HGNC Symbol;Acc:HGNC:7712]
90. DERA ENSGALG00000013095 4135 0.719 - - - - - - 0.719 - - - deoxyribose-phosphate aldolase [Source:NCBI gene;Acc:418176]
91. MTCH2 ENSGALG00000036196 15097 0.718 - - - - - - 0.718 - - - mitochondrial carrier 2 [Source:NCBI gene;Acc:395597]
92. GPHN ENSGALG00000009587 3045 0.717 - - - - - - 0.717 - - - gephyrin [Source:NCBI gene;Acc:428878]
93. PTTG1IP ENSGALG00000005675, ENSGALG00000009044 10949 0.717 - - - - - - 0.717 - - - pituitary tumor-transforming 1 interacting protein, transcript variant X1
94. FARP1 ENSGALG00000016886 13132 0.717 - - - - - - 0.717 - - - FERM, ARH/RhoGEF and pleckstrin domain protein 1 [Source:NCBI gene;Acc:418781]
95. MAP3K7 ENSGALG00000015596 15164 0.717 - - - - - - 0.717 - - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
96. TFEB ENSGALG00000039878 881 0.716 - - - - - - 0.716 - - - transcription factor EB [Source:NCBI gene;Acc:419922]
97. EIF2B1 ENSGALG00000003259 9491 0.716 - - - - - - 0.716 - - - eukaryotic translation initiation factor 2B subunit alpha [Source:HGNC Symbol;Acc:HGNC:3257]
98. MOCS2 ENSGALG00000014906 4974 0.716 - - - - - - 0.716 - - - molybdenum cofactor synthesis 2 [Source:HGNC Symbol;Acc:HGNC:7193]
99. PCM1 ENSGALG00000013602 6347 0.715 - - - - - - - 0.715 - - pericentriolar material 1 [Source:NCBI gene;Acc:395204]
100. PSMC3 ENSGALG00000008108 22922 0.715 - - - - - - 0.715 - - - proteasome 26S subunit, ATPase 3 [Source:NCBI gene;Acc:423182]

There are 57 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA