Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for HERC4

Gene Name Gene ID Reads Annotation
HERC4 ENSDARG00000059936 369 HECT and RLD domain containing E3 ubiquitin protein ligase 4 [Source:ZFIN;Acc:ZDB-GENE-070801-1]










Genes with expression patterns similar to HERC4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. HERC4 ENSDARG00000059936 369 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 HECT and RLD domain containing E3 ubiquitin protein ligase 4 [Source:ZFIN;Acc:ZDB-GENE-070801-1]
2. slc5a11 ENSDARG00000019932 160 1.743 - - - - - - 0.951 0.792 - solute carrier family 5 (sodium/inositol cotransporter), member 11 [Source:ZFIN;Acc:ZDB-GENE-041114-9]
3. CABZ01054405.1 CABZ01054405.1 115 1.741 - - - - - - 0.953 0.788 -
4. dgat1b ENSDARG00000054914 119 1.655 - - - - - 0.703 0.952 - - diacylglycerol O-acyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-040718-158]
5. hs3st3l ENSDARG00000059903 184 1.651 - - - - - - 0.935 0.716 - heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [Source:ZFIN;Acc:ZDB-GENE-070202-6]
6. wrb ENSDARG00000074271, ENSDARG00000110353 970 1.634 - 0.818 - - - 0.816 - - - tryptophan rich basic protein [Source:ZFIN;Acc:ZDB-GENE-030131-7696]
7. si:ch73-211l2.1 605 1.625 - - - - - - 0.870 0.755 - si:ch73-211l2.1
8. dazap1 ENSDARG00000070846, ENSDARG00000114578 525 1.595 - - - - - - 0.827 0.768 - DAZ associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070212-1]
9. dync2li1 ENSDARG00000039770, ENSDARG00000111924 133 1.572 0.754 - - - - - - 0.818 - dynein, cytoplasmic 2, light intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1230]
10. spoplb ENSDARG00000003974 887 1.565 - 0.743 - - - - 0.822 - - speckle-type POZ protein-like b [Source:ZFIN;Acc:ZDB-GENE-061103-277]
11. rock1 ENSDARG00000058993 2603 1.565 - - - - - - 0.821 0.744 - Rho-associated, coiled-coil containing protein kinase 1 [Source:ZFIN;Acc:ZDB-GENE-100712-2]
12. cacng6a ENSDARG00000036457 344 1.549 - - - - - - 0.707 0.842 - calcium channel, voltage-dependent, gamma subunit 6a [Source:ZFIN;Acc:ZDB-GENE-060503-440]
13. zgc:113278 ENSDARG00000037813 525 1.533 - 0.716 - - - - 0.817 - - zgc:113278 [Source:ZFIN;Acc:ZDB-GENE-050327-66]
14. cdc37l1 ENSDARG00000044265 360 1.501 - 0.718 - - - - - 0.783 - cell division cycle 37-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8865]
15. nom1 ENSDARG00000060027, ENSDARG00000112720 831 1.489 - - - - - - 0.719 0.770 - nucleolar protein with MIF4G domain 1 [Source:ZFIN;Acc:ZDB-GENE-060503-321]
16. cdc16 ENSDARG00000055470, ENSDARG00000111307 347 1.486 - - - 0.758 - - 0.728 - - cell division cycle 16 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-051113-132]
17. ptpn9b ENSDARG00000073902 755 1.485 - - - - - 0.733 - 0.752 - protein tyrosine phosphatase, non-receptor type 9, b [Source:ZFIN;Acc:ZDB-GENE-090313-52]
18. gli1 ENSDARG00000101244 534 1.466 0.730 0.736 - - - - - - - GLI family zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-030321-1]
19. mphosph10 ENSDARG00000012495 1679 1.466 0.741 - - - - 0.725 - - - M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-2146]
20. stil ENSDARG00000024904, ENSDARG00000114288, ENSDARG00000116436 324 1.448 - - - - - - 0.730 0.718 - scl/tal1 interrupting locus [Source:ZFIN;Acc:ZDB-GENE-020419-39]
21. METTL12 METTL12 415 1.439 - 0.736 - 0.703 - - - - -
22. si:zfos-364h11.1 99 0.969 - - - - - - 0.969 - - si:zfos-364h11.1, transcript variant X4
23. AP5B1 ENSDARG00000078805 62 0.968 - - - - - - 0.968 - - adaptor related protein complex 5 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-131121-204]
24. FHOD3 FHOD3 422 0.963 - - - - - - 0.963 - -
25. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 0.963 - - - - - - 0.963 - - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
26. PRRT4 ENSDARG00000088343 36 0.962 - - - - - - 0.962 - - proline-rich transmembrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-140106-210]
27. zgc:173570 ENSDARG00000037645, ENSDARG00000114242 46 0.961 - - - - - - 0.961 - - zgc:173570 [Source:ZFIN;Acc:ZDB-GENE-080218-15]
28. BX936303.1 ENSDARG00000103105 26 0.961 - - - - - - 0.961 - -
29. cbln2a ENSDARG00000074601 12 0.96 - - - - - - 0.960 - - cerebellin 2a precursor [Source:ZFIN;Acc:ZDB-GENE-070912-591]
30. CU570684.5 CU570684.5 55 0.959 - - - - - - 0.959 - -
31. drd4a ENSDARG00000038363 82 0.958 - - - - - - 0.958 - - dopamine receptor D4a [Source:ZFIN;Acc:ZDB-GENE-070112-996]
32. zbtb14 ENSDARG00000098273 36 0.957 - - - - - - 0.957 - - zinc finger and BTB domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-040426-2946]
33. C1H9orf156 C1H9orf156 122 0.956 - - - - - - 0.956 - -
34. MAGI3 MAGI3 114 0.954 - - - - - - 0.954 - -
35. sirt3 ENSDARG00000035819 101 0.954 - - - - - - 0.954 - - sirtuin 3 [Source:ZFIN;Acc:ZDB-GENE-070112-1762]
36. slc18a2 ENSDARG00000015110, ENSDARG00000115207 6 0.953 - - - - - - 0.953 - - solute carrier family 18 (vesicular monoamine transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-080514-1]
37. wu:fi34b01 38 0.953 - - - - - - 0.953 - - wu:fi34b01
38. dlx6a ENSDARG00000042291 185 0.953 - - - - - - 0.953 - - distal-less homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-980526-448]
39. HEATR2 HEATR2 6 0.953 - - - - - - 0.953 - -
40. nlgn4a 102 0.953 - - - - - - 0.953 - - neuroligin 4a, transcript variant X1
41. CABZ01112521.1 CABZ01112521.1 83 0.953 - - - - - - 0.953 - -
42. lppr5b lppr5b 23 0.953 - - - - - - 0.953 - -
43. PRKCA_1 ENSDARG00000099841 12 0.953 - - - - - - 0.953 - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
44. fgf16 ENSDARG00000042233, ENSDARG00000110602 39 0.953 - - - - - - 0.953 - - fibroblast growth factor 16 [Source:ZFIN;Acc:ZDB-GENE-060427-3]
45. HIST1H4J HIST1H4J 31 0.953 - - - - - - 0.953 - -
46. FP085412.2 FP085412.2 5 0.953 - - - - - - 0.953 - -
47. si:dkeyp-100a1.6 ENSDARG00000092141 33 0.953 - - - - - - 0.953 - - si:dkeyp-100a1.6 [Source:ZFIN;Acc:ZDB-GENE-081104-448]
48. BX324215.3 BX324215.3 12 0.953 - - - - - - 0.953 - -
49. pla1a ENSDARG00000102176, ENSDARG00000109274 29 0.953 - - - - - - 0.953 - - phospholipase A1 member A [Source:ZFIN;Acc:ZDB-GENE-030131-5949]
50. ins ENSDARG00000035350, ENSDARG00000116735 317 0.953 - - - - - - 0.953 - - preproinsulin [Source:ZFIN;Acc:ZDB-GENE-980526-110]
51. dapp1 ENSDARG00000039535 23 0.953 - - - - - - 0.953 - - dual adaptor of phosphotyrosine and 3-phosphoinositides [Source:ZFIN;Acc:ZDB-GENE-050417-180]
52. C24H7orf10 C24H7orf10 7 0.953 - - - - - - 0.953 - -
53. rad51c ENSDARG00000068919 98 0.953 - - - - - - 0.953 - - RAD51 paralog C [Source:ZFIN;Acc:ZDB-GENE-041010-204]
54. mrap ENSDARG00000091992 9 0.952 - - - - - - 0.952 - - melanocortin 2 receptor accessory protein [Source:ZFIN;Acc:ZDB-GENE-060503-387]
55. AL929092.1 ENSDARG00000092217 50 0.952 - - - - - - 0.952 - -
56. PPP1R35 ENSDARG00000068916 94 0.951 - - - - - - 0.951 - - protein phosphatase 1, regulatory subunit 35 [Source:ZFIN;Acc:ZDB-GENE-060825-232]
57. zdhhc24_1 ENSDARG00000105134, ENSDARG00000110259, ENSDARG00000116301 40 0.951 - - - - - - 0.951 - - zinc finger, DHHC-type containing 24 [Source:ZFIN;Acc:ZDB-GENE-040718-8]
58. olfml2bb ENSDARG00000021480 256 0.951 - - - - - - 0.951 - - olfactomedin-like 2Bb [Source:ZFIN;Acc:ZDB-GENE-070912-266]
59. ulk1a ENSDARG00000062518 10 0.951 - - - - - - 0.951 - - unc-51 like autophagy activating kinase 1a [Source:ZFIN;Acc:ZDB-GENE-080723-31]
60. gas8 ENSDARG00000101431 140 0.95 - - - - - - 0.950 - - growth arrest-specific 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1980]
61. cyp27a1.4 ENSDARG00000055159 47 0.95 - - - - - - 0.950 - - cytochrome P450, family 27, subfamily A, polypeptide 1, gene 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1060]
62. otx5 ENSDARG00000043483 282 0.949 - - - - - - 0.949 - - orthodenticle homolog 5 [Source:ZFIN;Acc:ZDB-GENE-030508-1]
63. lrrc24 ENSDARG00000101704 224 0.947 - - - - - - 0.947 - - leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
64. zyx ENSDARG00000075733 429 0.947 - - - - - - 0.947 - - zyxin [Source:ZFIN;Acc:ZDB-GENE-070928-18]
65. mlh1 ENSDARG00000025948 130 0.946 - - - - - - 0.946 - - mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-1600]
66. ephx1 ENSDARG00000042854 161 0.945 - - - - - - 0.945 - - epoxide hydrolase 1, microsomal (xenobiotic) [Source:ZFIN;Acc:ZDB-GENE-040426-913]
67. CABZ01079241.1 ENSDARG00000098424 88 0.945 - - - - - - 0.945 - - zinc finger Y-chromosomal protein 1-like [Source:NCBI gene;Acc:563292]
68. nmnat1 ENSDARG00000105748 102 0.945 - - - - - - 0.945 - - nicotinamide nucleotide adenylyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-050417-101]
69. cadpsa ENSDARG00000043661 160 0.944 - - - - - - 0.944 - - Ca2+-dependent activator protein for secretion a [Source:ZFIN;Acc:ZDB-GENE-030616-525]
70. scn3b ENSDARG00000062359 242 0.943 - - - - - - 0.943 - - sodium channel, voltage-gated, type III, beta [Source:ZFIN;Acc:ZDB-GENE-070920-2]
71. NMNAT3 ENSDARG00000077034 126 0.942 - - - - - - 0.942 - - nicotinamide nucleotide adenylyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:20989]
72. GPR158 GPR158 64 0.942 - - - - - - 0.942 - -
73. dusp7 ENSDARG00000101413 1307 0.942 - - - - - - 0.942 - - dual specificity phosphatase 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5457]
74. si:ch211-113a14.14_2 si:ch211-113a14.14_2 156 0.942 - - - - - - 0.942 - -
75. cdh13 ENSDARG00000014215 106 0.942 - - - - - - 0.942 - - cadherin 13, H-cadherin (heart) [Source:ZFIN;Acc:ZDB-GENE-060503-286]
76. CDH8 172 0.941 - - - - - - 0.941 - - cadherin 8
77. CMTM8_1 CMTM8_1 123 0.941 - - - - - - 0.941 - -
78. ECEL1 ENSDARG00000060549 62 0.941 - - - - - - 0.941 - - endothelin converting enzyme-like 1 [Source:ZFIN;Acc:ZDB-GENE-130530-692]
79. kcnk5a ENSDARG00000023587, ENSDARG00000111204 128 0.939 - - - - - - 0.939 - - potassium channel, subfamily K, member 5a [Source:ZFIN;Acc:ZDB-GENE-051113-112]
80. fer ENSDARG00000012196 83 0.939 - - - - - - 0.939 - - fer (fps/fes related) tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-060526-234]
81. CCDC34 CCDC34 313 0.938 - - - - - - 0.938 - -
82. gfm2 ENSDARG00000005561 302 0.937 - - - - - - 0.937 - - G elongation factor, mitochondrial 2 [Source:ZFIN;Acc:ZDB-GENE-060201-3]
83. swt1 ENSDARG00000094010 472 0.937 - - - - - - 0.937 - - SWT1 RNA endoribonuclease homolog [Source:ZFIN;Acc:ZDB-GENE-041015-373]
84. arhgef12b ENSDARG00000100913 1358 0.937 - - - - - - 0.937 - - Rho guanine nucleotide exchange factor (GEF) 12b [Source:ZFIN;Acc:ZDB-GENE-070705-36]
85. ptgis ENSDARG00000060094, ENSDARG00000113227 82 0.937 - - - - - - 0.937 - - prostaglandin I2 (prostacyclin) synthase [Source:ZFIN;Acc:ZDB-GENE-070116-1]
86. ZBTB8A ENSDARG00000059226 98 0.936 - - - - - - 0.936 - - zinc finger and BTB domain containing 8A [Source:ZFIN;Acc:ZDB-GENE-060421-5153]
87. eno1b ENSDARG00000013750 63 0.936 - - - - - - 0.936 - - enolase 1b, (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-1651]
88. zgc:114046 ENSDARG00000091728 68 0.936 - - - - - - 0.936 - - zgc:114046 [Source:ZFIN;Acc:ZDB-GENE-050320-24]
89. rasl12 ENSDARG00000002701 66 0.936 - - - - - - 0.936 - - RAS-like, family 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1201]
90. raver2 ENSDARG00000075034 290 0.935 - - - - - - 0.935 - - ribonucleoprotein, PTB-binding 2 [Source:ZFIN;Acc:ZDB-GENE-090713-1]
91. satb1a ENSDARG00000057649 250 0.935 - - - - - - 0.935 - - SATB homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-031010-36]
92. CABZ01081752.1 ENSDARG00000099245 84 0.935 - - - - - - 0.935 - - gastrula zinc finger protein XlCGF8.2DB-like [Source:NCBI gene;Acc:100330167]
93. si:ch211-218c6.9 si:ch211-218c6.9 40 0.933 - - - - - - 0.933 - -
94. BX546499.2 ENSDARG00000093947 26 0.931 - - - - - - 0.931 - -
95. cpeb4 cpeb4 57 0.93 - - - - - - 0.930 - -
96. cbln13 ENSDARG00000026904, ENSDARG00000114505 93 0.93 - - - - - - 0.930 - - cerebellin 13 [Source:ZFIN;Acc:ZDB-GENE-070912-288]
97. kcnh7 ENSDARG00000062687 172 0.928 - - - - - - 0.928 - - potassium channel, voltage gated eag related subfamily H, member 7 [Source:ZFIN;Acc:ZDB-GENE-120214-39]
98. GLIS2 GLIS2 141 0.928 - - - - - - 0.928 - -
99. si:ch211-153l6.4 si:ch211-153l6.4 45 0.927 - - - - - - 0.927 - -
100. bag5 ENSDARG00000017316 195 0.927 - - - - - - 0.927 - - BCL2 associated athanogene 5 [Source:ZFIN;Acc:ZDB-GENE-050913-58]

There are 898 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA