Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HERC3

Gene Name Gene ID Reads Annotation
HERC3 ENSGALG00000010363 3229 HECT and RLD domain containing E3 ubiquitin protein ligase 3 [Source:NCBI gene;Acc:422514]











Genes with expression patterns similar to HERC3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HERC3 ENSGALG00000010363 3229 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 HECT and RLD domain containing E3 ubiquitin protein ligase 3 [Source:NCBI gene;Acc:422514]
2. DDX10 ENSGALG00000017156 5657 1.49 - - - - - - 0.746 0.744 - - DEAD-box helicase 10 [Source:NCBI gene;Acc:418965]
3. GSKIP ENSGALG00000011088 3421 1.45 - - - - 0.726 - - 0.724 - - GSK3B interacting protein [Source:NCBI gene;Acc:423442]
4. PPM1M ENSGALG00000033277 556 0.806 - - - - 0.806 - - - - - protein phosphatase, Mg2+/Mn2+ dependent 1M [Source:NCBI gene;Acc:415941]
5. B3GNT2 ENSGALG00000008930 736 0.799 - - - - - - - 0.799 - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 [Source:NCBI gene;Acc:421286]
6. ATL2 ENSGALG00000037289 7926 0.792 - - - - - - - 0.792 - - atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
7. SMU1 ENSGALG00000002014 8136 0.782 - - - - 0.782 - - - - - SMU1, DNA replication regulator and spliceosomal factor [Source:NCBI gene;Acc:427377]
8. MTG2 ENSGALG00000005164 3031 0.78 - - - - 0.780 - - - - - mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]
9. MCCC2 ENSGALG00000036622 4184 0.779 - - - - - - - 0.779 - - methylcrotonoyl-CoA carboxylase 2
10. POLR3F ENSGALG00000008749 5645 0.777 - - - - - - - 0.777 - - RNA polymerase III subunit F [Source:NCBI gene;Acc:416723]
11. TAF2 ENSGALG00000043193 6311 0.776 - - - - - - - 0.776 - - TATA-box binding protein associated factor 2 [Source:NCBI gene;Acc:428389]
12. AVL9 ENSGALG00000041568 1558 0.776 - - - - 0.776 - - - - - AVL9 cell migration associated [Source:HGNC Symbol;Acc:HGNC:28994]
13. SGOL1 SGOL1 3919 0.774 - - - - 0.774 - - - - -
14. SKAP2 ENSGALG00000030081 13746 0.774 - - - - 0.774 - - - - - src kinase associated phosphoprotein 2 [Source:HGNC Symbol;Acc:HGNC:15687]
15. FAM45A ENSGALG00000009336 2437 0.772 - - - - - - - 0.772 - - family with sequence similarity 45 member A [Source:NCBI gene;Acc:423928]
16. HCN2 ENSGALG00000001342 7506 0.771 - - - - - - - 0.771 - - hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 [Source:HGNC Symbol;Acc:HGNC:4846]
17. CAMLG ENSGALG00000006411 662 0.77 - - - - 0.770 - - - - - calcium modulating ligand [Source:NCBI gene;Acc:395808]
18. ST6GALNAC4 ENSGALG00000005063 1056 0.77 - - - - 0.770 - - - - - ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Source:NCBI gene;Acc:395182]
19. HYPK ENSGALG00000013916 4900 0.77 - - - - 0.770 - - - - - huntingtin interacting protein K [Source:NCBI gene;Acc:770307]
20. LETM1 ENSGALG00000015706 2366 0.769 - - - - - - - 0.769 - - leucine zipper and EF-hand containing transmembrane protein 1 [Source:NCBI gene;Acc:422898]
21. RIOK3 ENSGALG00000015004 4249 0.765 - - - - - - 0.765 - - - RIO kinase 3 [Source:HGNC Symbol;Acc:HGNC:11451]
22. CCNDBP1 ENSGALG00000004837 11520 0.764 - - - - - - - 0.764 - - cyclin D1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:1587]
23. BRCA1 ENSGALG00000002781 2052 0.762 - - - - 0.762 - - - - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
24. NUPL2 ENSGALG00000010942 2442 0.762 - - - - - - - 0.762 - - nucleoporin like 2 [Source:NCBI gene;Acc:420614]
25. SSR1 ENSGALG00000012798 62626 0.762 - - - - - - - 0.762 - - signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
26. MORN4 ENSGALG00000006149 7772 0.758 - - - - - - - 0.758 - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
27. SGPL1 ENSGALG00000004553 4520 0.756 - - - - - - - - - 0.756 sphingosine-1-phosphate lyase 1 [Source:NCBI gene;Acc:423714]
28. KIAA1407 KIAA1407 252 0.755 - - - - 0.755 - - - - -
29. UTP18 ENSGALG00000002985 7129 0.752 - - - - 0.752 - - - - - UTP18, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]
30. ACP6 ENSGALG00000015485 3147 0.751 - - - - 0.751 - - - - - acid phosphatase 6, lysophosphatidic [Source:NCBI gene;Acc:418458]
31. RAB5C ENSGALG00000003359 5597 0.75 - - - - - - - 0.750 - - RAB5C, member RAS oncogene family [Source:NCBI gene;Acc:395197]
32. RPA3 ENSGALG00000010700 6212 0.748 - - - - 0.748 - - - - - replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
33. SCARB2 ENSGALG00000011499 2763 0.748 - - - - 0.748 - - - - - scavenger receptor class B member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
34. LRRC57 ENSGALG00000009112 1443 0.747 - - - - - - - 0.747 - - leucine rich repeat containing 57 [Source:NCBI gene;Acc:423236]
35. PEX2 ENSGALG00000035752 4427 0.746 - - - - - - - 0.746 - - peroxisomal biogenesis factor 2 [Source:NCBI gene;Acc:420192]
36. C20H20ORF111 C20H20ORF111 4029 0.744 - - - - - - - 0.744 - -
37. PLEKHA5 ENSGALG00000013134 3656 0.744 - - - - - - - 0.744 - - pleckstrin homology domain containing A5 [Source:HGNC Symbol;Acc:HGNC:30036]
38. SNX27 ENSGALG00000040687 3221 0.744 - - - - - - - 0.744 - - sorting nexin family member 27 [Source:NCBI gene;Acc:425666]
39. ADI1 ENSGALG00000025796 8636 0.744 - - - - - - - 0.744 - - acireductone dioxygenase 1 [Source:NCBI gene;Acc:421918]
40. CTCF 10811 0.743 - - - - - - 0.743 - - - CCCTC-binding factor, transcript variant X2
41. SPEN ENSGALG00000036932 9688 0.741 - - - - - - 0.741 - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
42. RBM45 ENSGALG00000009202 6057 0.741 - - - - - - - 0.741 - - RNA binding motif protein 45 [Source:NCBI gene;Acc:424132]
43. TMEM258 ENSGALG00000038292 31116 0.74 - - - - - - - 0.740 - - transmembrane protein 258 [Source:NCBI gene;Acc:422964]
44. PRKACB ENSGALG00000028530 12506 0.74 - - - - - - - 0.740 - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
45. MBD4 ENSGALG00000020747 3644 0.74 - - - - - - - 0.740 - - methyl-CpG binding domain 4, DNA glycosylase [Source:NCBI gene;Acc:395428]
46. AP4B1 ENSGALG00000035295 2008 0.738 - - - - 0.738 - - - - - adaptor related protein complex 4 beta 1 subunit [Source:NCBI gene;Acc:419879]
47. DERA ENSGALG00000013095 4135 0.738 - - - - - - - 0.738 - - deoxyribose-phosphate aldolase [Source:NCBI gene;Acc:418176]
48. PAXBP1 ENSGALG00000036833 5573 0.737 - - - - 0.737 - - - - - PAX3 and PAX7 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:13579]
49. RB1CC1 ENSGALG00000015259 4211 0.737 - - - - - - - 0.737 - - RB1 inducible coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:15574]
50. C11H16ORF80 C11H16ORF80 18673 0.737 - - - - - - - 0.737 - -
51. PHLDB1 ENSGALG00000040030 2423 0.736 - - - - - - - 0.736 - - pleckstrin homology like domain family B member 1 [Source:HGNC Symbol;Acc:HGNC:23697]
52. AGFG1 ENSGALG00000003052 4766 0.736 - - - - - - 0.736 - - - ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]
53. EIF4E3 ENSGALG00000007780 1182 0.736 - - - - 0.736 - - - - - eukaryotic translation initiation factor 4E family member 3 [Source:HGNC Symbol;Acc:HGNC:31837]
54. AKR7L ENSGALG00000004005 6040 0.735 - - - - - - - 0.735 - - aldo-keto reductase family 7 like (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:24056]
55. ENSGALG00000002903 ENSGALG00000002903 18304 0.735 - - - - - - 0.735 - - -
56. KCNC4 ENSGALG00000000400 129 0.735 - - - - 0.735 - - - - - potassium voltage-gated channel, Shaw-related subfamily, member 4, transcript variant X1
57. PHPT1 ENSGALG00000039061 17343 0.734 - - - - - - - 0.734 - - phosphohistidine phosphatase 1 [Source:NCBI gene;Acc:770750]
58. CCDC6 ENSGALG00000003165 93 0.733 - - - - 0.733 - - - - - coiled-coil domain containing 6 [Source:NCBI gene;Acc:423666]
59. ZMPSTE24 ENSGALG00000000855 5144 0.731 - - - - - - - 0.731 - - zinc metallopeptidase STE24 [Source:HGNC Symbol;Acc:HGNC:12877]
60. MUL1L ENSGALG00000006246 2084 0.73 - - - - - - 0.730 - - - mitochondrial E3 ubiquitin protein ligase 1-like, transcript variant X2
61. RIN2 ENSGALG00000008457 2661 0.73 - - - - - - 0.730 - - - Ras and Rab interactor 2 [Source:HGNC Symbol;Acc:HGNC:18750]
62. PAQR8 ENSGALG00000016675 85 0.73 - - - - 0.730 - - - - - progestin and adipoQ receptor family member 8 [Source:NCBI gene;Acc:422042]
63. NUP85 ENSGALG00000007974 21249 0.729 - - - - - - - 0.729 - - nucleoporin 85 [Source:NCBI gene;Acc:422120]
64. STON2 ENSGALG00000010579 76 0.729 - - - - 0.729 - - - - - stonin 2 [Source:HGNC Symbol;Acc:HGNC:30652]
65. PLK1 ENSGALG00000006110 12892 0.729 - - - - - - - 0.729 - - polo like kinase 1 [Source:NCBI gene;Acc:416575]
66. CHN1 ENSGALG00000009293 6415 0.729 - - - - - - 0.729 - - - chimerin 1 [Source:NCBI gene;Acc:429021]
67. CLIC3 ENSGALG00000038789 233 0.727 - - - - 0.727 - - - - - chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
68. KIAA1609 KIAA1609 1749 0.727 - - - - 0.727 - - - - -
69. PANK1 ENSGALG00000006431 2910 0.726 - - - - - - - 0.726 - - pantothenate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8598]
70. GKAP1 ENSGALG00000012586 2908 0.725 - - - - 0.725 - - - - - G kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:17496]
71. SMN ENSGALG00000002430 7515 0.725 - - - - 0.725 - - - - - survival of motor neuron [Source:NCBI gene;Acc:374025]
72. HEBP1 ENSGALG00000011798, ENSGALG00000011799 2359 0.725 - - - - 0.725 - - - - - heme binding protein 1 [Source:NCBI gene;Acc:417961]
73. EPB41L1 ENSGALG00000034171 3616 0.725 - - - - - - - 0.725 - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
74. TMCC2 ENSGALG00000034281 3458 0.725 - - - - - - 0.725 - - - transmembrane and coiled-coil domain family 2 [Source:HGNC Symbol;Acc:HGNC:24239]
75. PRKCDBP PRKCDBP 2249 0.725 - - - - - - - - - 0.725
76. XRN2 ENSGALG00000008372 22164 0.724 - - - - - - 0.724 - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
77. ANKRD32 ANKRD32 2875 0.723 - - - - 0.723 - - - - -
78. ATP5A1 ATP5A1 32367 0.723 - - - - - - - 0.723 - -
79. PAPD7 ENSGALG00000013061 2031 0.723 - - - - - - - 0.723 - - poly(A) RNA polymerase D7, non-canonical [Source:NCBI gene;Acc:770425]
80. ABCA3 ENSGALG00000037837 1606 0.723 - - - - - - - - - 0.723 ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]
81. BAG5 ENSGALG00000031062 4498 0.723 - - - - - - - 0.723 - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
82. DONSON ENSGALG00000038649 1338 0.723 - - - - - - 0.723 - - - downstream neighbor of SON [Source:HGNC Symbol;Acc:HGNC:2993]
83. DNMT3B ENSGALG00000041461 12959 0.722 - - - - - - - 0.722 - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
84. NAT9 ENSGALG00000007723 2098 0.722 - - - - 0.722 - - - - - N-acetyltransferase 9 (putative), transcript variant X7
85. RELL1 ENSGALG00000014336 2950 0.722 - - - - 0.722 - - - - - RELT like 1 [Source:NCBI gene;Acc:422795]
86. NUP133 ENSGALG00000011091 3804 0.722 - - - - - - - 0.722 - - nucleoporin 133 [Source:HGNC Symbol;Acc:HGNC:18016]
87. CEP70 ENSGALG00000012087 7992 0.721 - - - - - - - 0.721 - - centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]
88. CRY1 ENSGALG00000012638 2464 0.721 - - - - 0.721 - - - - - cryptochrome circadian regulator 1 [Source:NCBI gene;Acc:374093]
89. GPR158 ENSGALG00000007667 111 0.721 - - - - 0.721 - - - - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
90. GOT1 ENSGALG00000007484 21664 0.721 - - - - - - 0.721 - - - glutamic-oxaloacetic transaminase 1 [Source:NCBI gene;Acc:396261]
91. HDAC4 ENSGALG00000004288 2124 0.721 - - - - 0.721 - - - - - histone deacetylase 4 [Source:NCBI gene;Acc:374207]
92. ZFAND4 ENSGALG00000005893 1415 0.72 - - - - - - - 0.720 - - zinc finger AN1-type containing 4 [Source:HGNC Symbol;Acc:HGNC:23504]
93. PRR11 2624 0.72 - - - - - - - 0.720 - - proline rich 11, transcript variant X8
94. METTL25 1538 0.72 - - - - - - - 0.720 - - methyltransferase like 25, transcript variant X1
95. PSMD13 ENSGALG00000043684 14720 0.72 - - - - - - - 0.720 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
96. CECR1 336 0.719 - - - - 0.719 - - - - - cat eye syndrome chromosome region, candidate 1, transcript variant X2
97. PPTC7 ENSGALG00000004550 154 0.718 - - - - 0.718 - - - - - PTC7 protein phosphatase homolog [Source:HGNC Symbol;Acc:HGNC:30695]
98. CCDC132 CCDC132 2632 0.718 - - - - - - - 0.718 - -
99. COQ7 ENSGALG00000006861 5118 0.718 - - - - - - - 0.718 - - coenzyme Q7, hydroxylase [Source:NCBI gene;Acc:416609]
100. VPS11 ENSGALG00000029536 3421 0.718 - - - - - - - 0.718 - - VPS11, CORVET/HOPS core subunit [Source:HGNC Symbol;Acc:HGNC:14583]

There are 91 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA