Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for HERC1

Gene Name Gene ID Reads Annotation
HERC1 ENSDARG00000077901, ENSDARG00000114013 577 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8542]










Genes with expression patterns similar to HERC1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. HERC1 ENSDARG00000077901, ENSDARG00000114013 577 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8542]
2. clec16a ENSDARG00000038094 501 1.642 - 0.781 - 0.861 - - - - - C-type lectin domain containing 16A [Source:ZFIN;Acc:ZDB-GENE-040426-951]
3. mxra7 ENSDARG00000095300 332 1.603 - - - 0.858 - 0.745 - - - matrix-remodelling associated 7 [Source:ZFIN;Acc:ZDB-GENE-041014-95]
4. C17H15orf52 244 1.595 - - - 0.879 - - 0.716 - - chromosome 17 C15orf52 homolog, transcript variant X3
5. ITFG3 ITFG3 1803 1.588 - 0.722 - 0.866 - - - - -
6. setd3 ENSDARG00000016513 1507 1.574 - - - - - 0.825 0.749 - - SET domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9137]
7. SMIM20 ENSDARG00000112670 423 1.553 - 0.845 - - - 0.708 - - - small integral membrane protein 20 [Source:ZFIN;Acc:ZDB-GENE-131002-2]
8. igdcc4 ENSDARG00000076919 1303 1.522 - - - 0.704 - 0.818 - - - immunoglobulin superfamily, DCC subclass, member 4 [Source:ZFIN;Acc:ZDB-GENE-080327-32]
9. gars ENSDARG00000059070 17015 1.517 - - - - - 0.777 0.740 - - glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
10. TRAPPC10 ENSDARG00000098118 954 1.508 - - - - - 0.768 - 0.740 - trafficking protein particle complex 10 [Source:ZFIN;Acc:ZDB-GENE-131115-1]
11. mafg2 mafg2 1041 1.499 - - - - - 0.750 0.749 - -
12. entpd5b ENSDARG00000093659 450 1.496 - - - 0.750 - - 0.746 - - ectonucleoside triphosphate diphosphohydrolase 5b [Source:ZFIN;Acc:ZDB-GENE-091118-88]
13. rab5if ENSDARG00000074790 8807 1.477 - - - - - 0.714 0.763 - - RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
14. vgll2b ENSDARG00000053773 444 1.472 - - - 0.768 - - 0.704 - - vestigial-like family member 2b [Source:ZFIN;Acc:ZDB-GENE-050809-113]
15. myod1 ENSDARG00000030110 6019 1.462 - - - - - 0.717 0.745 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
16. CR382298.3 CR382298.3 666 1.44 - - - - - 0.722 0.718 - -
17. tcp11l2 ENSDARG00000027316 1906 1.44 - 0.702 - - - - 0.738 - - t-complex 11, testis-specific-like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1956]
18. pabpc4 ENSDARG00000059259, ENSDARG00000111312 2392 1.436 - - - - - 0.717 0.719 - - poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663]
19. rbpja ENSDARG00000003398 1309 0.929 - - - - - 0.929 - - - recombination signal binding protein for immunoglobulin kappa J region a [Source:ZFIN;Acc:ZDB-GENE-031117-1]
20. apba1b ENSDARG00000074328 254 0.911 - - - 0.911 - - - - - amyloid beta (A4) precursor protein-binding, family A, member 1b [Source:ZFIN;Acc:ZDB-GENE-070925-3]
21. armc9 ENSDARG00000087299 459 0.904 - - - 0.904 - - - - - armadillo repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-100922-67]
22. tmem184c ENSDARG00000078789, ENSDARG00000111570 395 0.901 - - - 0.901 - - - - - transmembrane protein 184C [Source:ZFIN;Acc:ZDB-GENE-090312-89]
23. rybpb ENSDARG00000053459 1464 0.899 - - - 0.899 - - - - - RING1 and YY1 binding protein b [Source:ZFIN;Acc:ZDB-GENE-061103-96]
24. kptn ENSDARG00000015937, ENSDARG00000111197 290 0.898 - - - 0.898 - - - - - kaptin (actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-040801-258]
25. pgm2 ENSDARG00000018178 985 0.896 - - - 0.896 - - - - - phosphoglucomutase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2218]
26. toe1 ENSDARG00000077544 261 0.896 - 0.896 - - - - - - - target of EGR1, exonuclease [Source:ZFIN;Acc:ZDB-GENE-070912-533]
27. CACNG4 CACNG4 123 0.896 - - - 0.896 - - - - -
28. bdnf ENSDARG00000018817 193 0.895 - - - 0.895 - - - - - brain-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-000412-1]
29. rad9a ENSDARG00000056984, ENSDARG00000115514 152 0.894 - - - 0.894 - - - - - RAD9 checkpoint clamp component A [Source:ZFIN;Acc:ZDB-GENE-040426-935]
30. OSBPL3 OSBPL3 145 0.894 - - - 0.894 - - - - -
31. KCNA3 KCNA3 748 0.893 - - - 0.893 - - - - -
32. b3gat3 ENSDARG00000001939 58 0.892 - - - 0.892 - - - - - beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) [Source:ZFIN;Acc:ZDB-GENE-020419-3]
33. qrsl1 ENSDARG00000032704 200 0.891 - - - 0.891 - - - - - glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5540]
34. LRIG3 ENSDARG00000079363 909 0.89 - - - 0.890 - - - - - leucine-rich repeats and immunoglobulin-like domains 3 [Source:ZFIN;Acc:ZDB-GENE-130530-866]
35. CABZ01058646.1 CABZ01058646.1 205 0.889 - - - 0.889 - - - - -
36. ftr67 ENSDARG00000098820 611 0.889 - - - 0.889 - - - - - finTRIM family, member 67 [Source:ZFIN;Acc:ZDB-GENE-060312-27]
37. zgc:165518 ENSDARG00000075737 35 0.889 - - - 0.889 - - - - - zgc:165518 [Source:ZFIN;Acc:ZDB-GENE-070720-15]
38. foxo1a ENSDARG00000099555 288 0.887 - - - 0.887 - - - - - forkhead box O1 a [Source:ZFIN;Acc:ZDB-GENE-061013-59]
39. olfml3a ENSDARG00000061852 139 0.887 - - - 0.887 - - - - - olfactomedin-like 3a [Source:ZFIN;Acc:ZDB-GENE-060825-31]
40. SLC5A6 SLC5A6 179 0.887 - - - 0.887 - - - - -
41. lhfpl4a ENSDARG00000111810 206 0.887 - - - 0.887 - - - - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
42. rdh12l ENSDARG00000045277 139 0.886 - - - 0.886 - - - - - retinol dehydrogenase 12, like [Source:ZFIN;Acc:ZDB-GENE-040801-48]
43. zgc:77151 ENSDARG00000054307 120 0.885 - - - 0.885 - - - - - zgc:77151 [Source:ZFIN;Acc:ZDB-GENE-030131-9097]
44. dot1l ENSDARG00000061992 602 0.885 - - - 0.885 - - - - - DOT1-like histone H3K79 methyltransferase [Source:ZFIN;Acc:ZDB-GENE-060503-341]
45. nox1 ENSDARG00000087574 60 0.885 - - - 0.885 - - - - - NADPH oxidase 1 [Source:ZFIN;Acc:ZDB-GENE-070404-1]
46. osgin2 ENSDARG00000040302 45 0.885 - - - 0.885 - - - - - oxidative stress induced growth inhibitor family member 2 [Source:ZFIN;Acc:ZDB-GENE-081028-57]
47. creld2 ENSDARG00000029071, ENSDARG00000116264 333 0.884 - - - 0.884 - - - - - cysteine-rich with EGF-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1626]
48. skilb ENSDARG00000022904 300 0.884 - - - 0.884 - - - - - SKI-like proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-080723-40]
49. si:ch211-126i22.5 ENSDARG00000060911 209 0.884 - - - 0.884 - - - - - si:ch211-126i22.5 [Source:ZFIN;Acc:ZDB-GENE-091204-183]
50. mfsd10 ENSDARG00000086786 304 0.884 - - - 0.884 - - - - - major facilitator superfamily domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-050417-154]
51. rnf11b ENSDARG00000040635 242 0.884 - - - 0.884 - - - - - ring finger protein 11b [Source:ZFIN;Acc:ZDB-GENE-050913-69]
52. zgc:173480 171 0.884 - - - 0.884 - - - - - zgc:173480
53. aatf ENSDARG00000025467, ENSDARG00000109548 796 0.884 - - - - - 0.884 - - - apoptosis antagonizing transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-9654]
54. slc34a1a ENSDARG00000028824 35 0.883 - - - 0.883 - - - - - solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
55. grap2b ENSDARG00000101169 58 0.883 - - - 0.883 - - - - - GRB2 related adaptor protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1485]
56. si:dkey-151m22.8 ENSDARG00000095934 41 0.883 - - - 0.883 - - - - - si:dkey-151m22.8 [Source:ZFIN;Acc:ZDB-GENE-110411-250]
57. ddx31 ENSDARG00000035507 167 0.883 - - - 0.883 - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
58. fam49bb ENSDARG00000045417 513 0.882 - - - 0.882 - - - - - family with sequence similarity 49, member Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2590]
59. VASH1 ENSDARG00000092716 33 0.882 - - - 0.882 - - - - - vasohibin 1 [Source:HGNC Symbol;Acc:HGNC:19964]
60. fam84a ENSDARG00000018921 375 0.882 - - - 0.882 - - - - - family with sequence similarity 84, member A [Source:ZFIN;Acc:ZDB-GENE-040426-1247]
61. naglu ENSDARG00000030156 378 0.881 - - - 0.881 - - - - - N-acetylglucosaminidase, alpha [Source:ZFIN;Acc:ZDB-GENE-100726-2]
62. ppcs ENSDARG00000061889 224 0.881 - - - 0.881 - - - - - phosphopantothenoylcysteine synthetase [Source:ZFIN;Acc:ZDB-GENE-060512-104]
63. dnajb1b ENSDARG00000041394 25 0.881 - - - 0.881 - - - - - DnaJ (Hsp40) homolog, subfamily B, member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5455]
64. hbs1l ENSDARG00000036778, ENSDARG00000115090 130 0.88 - - - 0.880 - - - - - HBS1-like translational GTPase [Source:ZFIN;Acc:ZDB-GENE-030131-2987]
65. cdk9 ENSDARG00000044811, ENSDARG00000111590 2524 0.88 - 0.880 - - - - - - - cyclin-dependent kinase 9 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-321]
66. IL17RA_1 IL17RA_1 39 0.88 - - - 0.880 - - - - -
67. usp37 ENSDARG00000040990 637 0.879 - - - 0.879 - - - - - ubiquitin specific peptidase 37 [Source:ZFIN;Acc:ZDB-GENE-061013-802]
68. si:dkey-14k9.3 ENSDARG00000045595 256 0.878 - - - 0.878 - - - - - si:dkey-14k9.3 [Source:ZFIN;Acc:ZDB-GENE-030131-2893]
69. skia ENSDARG00000042151 1850 0.878 - - - 0.878 - - - - - v-ski avian sarcoma viral oncogene homolog a [Source:ZFIN;Acc:ZDB-GENE-990715-9]
70. SLITRK6 ENSDARG00000098769 217 0.878 - - - 0.878 - - - - - SLIT and NTRK-like family, member 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2816]
71. STAC ENSDARG00000074004 83 0.878 - - - 0.878 - - - - - SH3 and cysteine rich domain [Source:ZFIN;Acc:ZDB-GENE-131121-459]
72. wdr83 ENSDARG00000041600, ENSDARG00000115089 253 0.877 - - - 0.877 - - - - - WD repeat domain containing 83 [Source:ZFIN;Acc:ZDB-GENE-040718-126]
73. si:dkey-66i24.9 ENSDARG00000096689 796 0.876 - - - 0.876 - - - - - si:dkey-66i24.9 [Source:ZFIN;Acc:ZDB-GENE-130531-63]
74. ccdc82 ENSDARG00000014966 563 0.876 - - - 0.876 - - - - - coiled-coil domain containing 82 [Source:ZFIN;Acc:ZDB-GENE-030131-5749]
75. cacna1sa ENSDARG00000029457 883 0.876 - - - - - - 0.876 - - calcium channel, voltage-dependent, L type, alpha 1S subunit, a [Source:ZFIN;Acc:ZDB-GENE-090514-1]
76. tnni2a.2 ENSDARG00000005841 483 0.876 - - - 0.876 - - - - - troponin I type 2a (skeletal, fast), tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040426-970]
77. rxrgb ENSDARG00000004697 332 0.876 - - - 0.876 - - - - - retinoid X receptor, gamma b [Source:ZFIN;Acc:ZDB-GENE-040718-34]
78. flcn ENSDARG00000062385, ENSDARG00000116055 614 0.876 - - - 0.876 - - - - - folliculin [Source:ZFIN;Acc:ZDB-GENE-060421-3470]
79. si:ch211-120e1.6 si:ch211-120e1.6 292 0.875 - - - 0.875 - - - - -
80. ntf7 ntf7 72 0.875 - - - 0.875 - - - - -
81. ANKRD6 ANKRD6 73 0.874 - - - 0.874 - - - - -
82. ndufaf3 ENSDARG00000112931 743 0.874 - - - - - 0.874 - - - NADH:ubiquinone oxidoreductase complex assembly factor [Source:ZFIN;Acc:ZDB-GENE-070112-282]
83. sorbs1 ENSDARG00000103435 2297 0.874 - - - 0.874 - - - - - sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
84. AL840631.3 AL840631.3 82 0.873 - - - 0.873 - - - - -
85. mecr ENSDARG00000032326 314 0.873 - - - 0.873 - - - - - mitochondrial trans-2-enoyl-CoA reductase [Source:ZFIN;Acc:ZDB-GENE-050417-399]
86. abhd2a ENSDARG00000025797 312 0.873 - - - 0.873 - - - - - abhydrolase domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-040426-784]
87. si:ch73-389b16.2 ENSDARG00000103802 340 0.872 - - - 0.872 - - - - - si:ch73-389b16.2 [Source:ZFIN;Acc:ZDB-GENE-050411-113]
88. cactin ENSDARG00000059866 553 0.872 - - - 0.872 - - - - - cactin [Source:ZFIN;Acc:ZDB-GENE-060503-322]
89. mms19 ENSDARG00000079067 65 0.872 - - - 0.872 - - - - - MMS19 homolog, cytosolic iron-sulfur assembly component [Source:ZFIN;Acc:ZDB-GENE-120316-2]
90. si:ch211-174j14.2 ENSDARG00000093015 111 0.871 - - - 0.871 - - - - - si:ch211-174j14.2 [Source:ZFIN;Acc:ZDB-GENE-050419-63]
91. cmc1 ENSDARG00000103670 1197 0.871 - - - 0.871 - - - - - C-x(9)-C motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2626]
92. fam169ab ENSDARG00000004177 232 0.869 - - - 0.869 - - - - - family with sequence similarity 169, member Ab [Source:ZFIN;Acc:ZDB-GENE-091118-95]
93. pef1 ENSDARG00000023989 3013 0.869 - - - 0.869 - - - - - penta-EF-hand domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-259]
94. CABZ01043311.1 CABZ01043311.1 475 0.868 - - - - - - 0.868 - -
95. calhm2 ENSDARG00000039482 138 0.868 - - - 0.868 - - - - - calcium homeostasis modulator 2 [Source:ZFIN;Acc:ZDB-GENE-030616-561]
96. CEP192 CEP192 978 0.867 - - - - - 0.867 - - -
97. slc17a9b ENSDARG00000011049 231 0.867 - - - 0.867 - - - - - solute carrier family 17 (vesicular nucleotide transporter), member 9b [Source:ZFIN;Acc:ZDB-GENE-040718-380]
98. rabgef1 ENSDARG00000014430 1176 0.867 - - - 0.867 - - - - - RAB guanine nucleotide exchange factor (GEF) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1486]
99. snx9a ENSDARG00000000837 424 0.866 - - - 0.866 - - - - - sorting nexin 9a [Source:ZFIN;Acc:ZDB-GENE-030616-66]
100. fam198b ENSDARG00000077054 98 0.865 - - - 0.865 - - - - - family with sequence similarity 198, member B [Source:ZFIN;Acc:ZDB-GENE-100105-1]

There are 758 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA