Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HERC1

Gene Name Gene ID Reads Annotation
HERC1 ENSGALG00000003381 672 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X8











Genes with expression patterns similar to HERC1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HERC1 ENSGALG00000003381 672 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X8
2. TSHZ2 ENSGALG00000007809 247 1.544 - - - - 0.821 - - - - 0.723 teashirt zinc finger homeobox 2 [Source:HGNC Symbol;Acc:HGNC:13010]
3. CEP112 ENSGALG00000034989 123 1.469 - - - - - 0.727 - - 0.742 - centrosomal protein 112 [Source:NCBI gene;Acc:101749632]
4. CLN5 ENSGALG00000016917 386 0.945 - - - - - - - - 0.945 - CLN5, intracellular trafficking protein [Source:NCBI gene;Acc:101752092]
5. PDE10A ENSGALG00000011537 642 0.93 - - - - - - - - 0.930 - phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
6. DYNC2H1 ENSGALG00000041814 1770 0.891 - - - - - - - - 0.891 - dynein cytoplasmic 2 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
7. ZC3HAV1 ENSGALG00000013911 162 0.874 - - - - - - - - 0.874 - zinc finger CCCH-type containing, antiviral 1 [Source:NCBI gene;Acc:426315]
8. MRGBP ENSGALG00000005531 79 0.873 - - - - - - - - 0.873 - MRG domain binding protein [Source:HGNC Symbol;Acc:HGNC:15866]
9. HAS2 ENSGALG00000029596 4192 0.861 - - - - - - - - 0.861 - hyaluronan synthase 2 [Source:NCBI gene;Acc:395594]
10. SNORD38 SNORD38 537 0.86 - - - - - - - - 0.860 -
11. CDK10 ENSGALG00000006144 2424 0.86 - - - - - - - - 0.860 - cyclin dependent kinase 10 [Source:NCBI gene;Acc:415840]
12. FAM19A4 ENSGALG00000042228 1724 0.858 - - - - - - - - 0.858 - family with sequence similarity 19 member A4, C-C motif chemokine like [Source:HGNC Symbol;Acc:HGNC:21591]
13. PLXNA1 ENSGALG00000006097 886 0.85 - - - - - - 0.850 - - - plexin A1 [Source:HGNC Symbol;Acc:HGNC:9099]
14. TRUB1 ENSGALG00000009091 1005 0.849 - - - - - - - - 0.849 - TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
15. AP4E1 2726 0.842 - - - - - - - - 0.842 - adaptor related protein complex 4 epsilon 1 subunit, transcript variant X2
16. TOB2 ENSGALG00000011957 2881 0.836 - - - - - - - - 0.836 - transducer of ERBB2, 2 [Source:NCBI gene;Acc:417992]
17. TTLL12 ENSGALG00000014167 714 0.835 - - - - - - - - 0.835 - tubulin tyrosine ligase like 12 [Source:NCBI gene;Acc:418227]
18. FGF9 ENSGALG00000025748 469 0.831 - - - - - - - - - 0.831 fibroblast growth factor 9 [Source:NCBI gene;Acc:378917]
19. GUCY1A3 718 0.826 - - - - - - - - 0.826 - guanylate cyclase 1 soluble subunit alpha, transcript variant X2
20. ZNF618 ENSGALG00000008886 1326 0.824 - - - - - - - - 0.824 - zinc finger protein 618 [Source:HGNC Symbol;Acc:HGNC:29416]
21. NCAPD3 ENSGALG00000001491 221 0.822 - - - - - - 0.822 - - - non-SMC condensin II complex subunit D3, transcript variant X3
22. FLII ENSGALG00000004997 623 0.82 - - - - - - - - 0.820 - FLII, actin remodeling protein [Source:NCBI gene;Acc:416515]
23. MIB1 ENSGALG00000014974 3583 0.815 - - - - - - - - 0.815 - mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
24. ENSGALG00000008915 ENSGALG00000008915 1120 0.814 - - 0.814 - - - - - - -
25. PLIN3 ENSGALG00000044632 370 0.813 - - - - - - - - 0.813 - perilipin 3, transcript variant X2
26. SPINK5 SPINK5 195 0.813 - - - - - - 0.813 - - -
27. COL24A1 ENSGALG00000006864 161 0.811 - - - - - - - - 0.811 - collagen type XXIV alpha 1 chain, transcript variant X4
28. SORD ENSGALG00000031408 2119 0.808 - - - - - - - - 0.808 - sorbitol dehydrogenase [Source:NCBI gene;Acc:415332]
29. BICD1 ENSGALG00000012934 112 0.806 - - - - - - - - 0.806 - BICD cargo adaptor 1 [Source:HGNC Symbol;Acc:HGNC:1049]
30. DUSP16 ENSGALG00000028155 1410 0.806 - - - - - - - - 0.806 - dual specificity phosphatase 16, transcript variant X1
31. HOTAIRM1 HOTAIRM1 4335 0.804 - - - - - - - - 0.804 -
32. TRIM24 ENSGALG00000012823 2725 0.804 - - - - - - - - 0.804 - tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
33. PLCXD3 ENSGALG00000014845 247 0.803 - - - - - - - - 0.803 - phosphatidylinositol specific phospholipase C X domain containing 3 [Source:HGNC Symbol;Acc:HGNC:31822]
34. ADAMTS13 ENSGALG00000033597 255 0.8 - - - - - - - - - 0.800 ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
35. C7 ENSGALG00000014835 322 0.8 - - - - - - - - 0.800 - Gallus gallus complement C7 (C7), mRNA. [Source:RefSeq mRNA;Acc:NM_001318402]
36. VPS39 ENSGALG00000008991 4018 0.799 - - - - - - - - 0.799 - VPS39, HOPS complex subunit [Source:NCBI gene;Acc:423230]
37. VPS72 ENSGALG00000000793 329 0.799 - - - - - - - - 0.799 - vacuolar protein sorting 72 homolog [Source:HGNC Symbol;Acc:HGNC:11644]
38. CLCN5 ENSGALG00000007234 1143 0.797 - - - - - - - - - 0.797 chloride voltage-gated channel 5 [Source:HGNC Symbol;Acc:HGNC:2023]
39. STRIP1 ENSGALG00000037995 621 0.796 - - - - - - - - - 0.796 striatin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:25916]
40. APH1A ENSGALG00000045163 146 0.795 - - 0.795 - - - - - - - aph-1 homolog A, gamma-secretase subunit [Source:HGNC Symbol;Acc:HGNC:29509]
41. GGCT ENSGALG00000030552 3446 0.791 - - 0.791 - - - - - - - gamma-glutamylcyclotransferase
42. KTN1 ENSGALG00000012137 4058 0.791 - - - - - - - - 0.791 - kinectin 1 [Source:NCBI gene;Acc:396335]
43. PLEKHH3 ENSGALG00000037269 875 0.79 - - - - - - - - 0.790 - pleckstrin homology, MyTH4 and FERM domain containing H3 [Source:HGNC Symbol;Acc:HGNC:26105]
44. RUVBL1 ENSGALG00000005931 9379 0.789 - - - - - - - - 0.789 - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
45. NSUN5 ENSGALG00000000891 1356 0.789 - - - - - - - - - 0.789 NOP2/Sun RNA methyltransferase family member 5 [Source:HGNC Symbol;Acc:HGNC:16385]
46. PLEKHM2 ENSGALG00000003439 44 0.788 - - - - - - 0.788 - - - pleckstrin homology and RUN domain containing M2 [Source:HGNC Symbol;Acc:HGNC:29131]
47. gga-mir-1306 ENSGALG00000025271 1231 0.788 - - - - - - - - 0.788 - gga-mir-1306 [Source:miRBase;Acc:MI0007057]
48. FAM35A 1187 0.786 - - - - - - - - 0.786 - family with sequence similarity 35 member A
49. SCARB2 ENSGALG00000011499 2763 0.782 - - - - - - - - 0.782 - scavenger receptor class B member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
50. DEF8 ENSGALG00000025712 790 0.781 - - - - - - - - 0.781 - differentially expressed in FDCP 8 homolog [Source:HGNC Symbol;Acc:HGNC:25969]
51. MIS12 ENSGALG00000001632 372 0.78 - - 0.780 - - - - - - - MIS12, kinetochore complex component [Source:NCBI gene;Acc:693254]
52. IFI27L2 1365 0.78 - - - - - - - - 0.780 - interferon, alpha-inducible protein 27-like 2, transcript variant X4
53. NCKAP5 ENSGALG00000012177, ENSGALG00000045368 266 0.78 - - - - - - - - 0.780 - NCK associated protein 5, transcript variant X8
54. OGFOD3 ENSGALG00000001618 2438 0.78 - - - - - - - - 0.780 - 2-oxoglutarate and iron dependent oxygenase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26174]
55. COX11 ENSGALG00000027190 4475 0.779 - - - - - - - - 0.779 - cytochrome c oxidase copper chaperone COX11 [Source:HGNC Symbol;Acc:HGNC:2261]
56. FLCN ENSGALG00000004816 4101 0.777 - - - - - - - - 0.777 - folliculin, transcript variant X1
57. THADA ENSGALG00000009932 2392 0.775 - - - - - - - - 0.775 - THADA, armadillo repeat containing [Source:NCBI gene;Acc:421398]
58. CARD9 ENSGALG00000001889 83 0.775 - - - - - - 0.775 - - - caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
59. CASKIN1 604 0.775 - - - - - - - - 0.775 - CASK interacting protein 1, transcript variant X4
60. SETD5 ENSGALG00000006571 1499 0.774 - - - - - - 0.774 - - - SET domain containing 5 [Source:NCBI gene;Acc:416046]
61. BMP2K ENSGALG00000010885 37 0.773 - - 0.773 - - - - - - - BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
62. UXS1 ENSGALG00000016801 3724 0.773 - - 0.773 - - - - - - - UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729]
63. CAT ENSGALG00000030187 7534 0.773 - - - - - - - - 0.773 - catalase [Source:NCBI gene;Acc:423600]
64. SLC10A7 ENSGALG00000010006 2064 0.772 - - - - - - - - 0.772 - solute carrier family 10 member 7 [Source:NCBI gene;Acc:422467]
65. SYNGR3 ENSGALG00000005589 61 0.77 - - - - - - 0.770 - - - synaptogyrin 3 [Source:NCBI gene;Acc:416548]
66. L3HYPDH ENSGALG00000012011 2212 0.768 - - - - - - - - 0.768 - trans-L-3-hydroxyproline dehydratase [Source:HGNC Symbol;Acc:HGNC:20488]
67. NAF1 ENSGALG00000009496 2003 0.768 - - - - - - - - 0.768 - nuclear assembly factor 1 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:25126]
68. EXOSC8 ENSGALG00000017048 2939 0.767 - - - - - - - - 0.767 - exosome component 8 [Source:HGNC Symbol;Acc:HGNC:17035]
69. HMGCL ENSGALG00000004057 5201 0.767 - - - - - - - - - 0.767 3-hydroxymethyl-3-methylglutaryl-CoA lyase [Source:NCBI gene;Acc:396316]
70. TUSC1 22 0.766 - - - - - - - - - 0.766 tumor suppressor candidate 1
71. CARHSP1 ENSGALG00000042981 6920 0.765 - - - - - - - - 0.765 - calcium regulated heat stable protein 1 [Source:HGNC Symbol;Acc:HGNC:17150]
72. SEC22C ENSGALG00000005268 1151 0.762 - - 0.762 - - - - - - - SEC22 homolog C, vesicle trafficking protein [Source:HGNC Symbol;Acc:HGNC:16828]
73. NT5C1B ENSGALG00000016471 1378 0.76 - - - - - - - - 0.760 - 5'-nucleotidase, cytosolic IB
74. NPM1 ENSGALG00000002197 24109 0.759 - - - - - - - - 0.759 - nucleophosmin [Source:NCBI gene;Acc:396203]
75. CD2AP ENSGALG00000016720 8852 0.758 - - - - - - - - 0.758 - Gallus gallus CD2 associated protein (CD2AP), mRNA. [Source:RefSeq mRNA;Acc:NM_001318403]
76. ATAD5 ENSGALG00000003294 4830 0.758 - - - - - - - - 0.758 - ATPase family, AAA domain containing 5 [Source:NCBI gene;Acc:417408]
77. GOLGA3 ENSGALG00000002158 1342 0.758 - - - - - - - - 0.758 - golgin A3 [Source:HGNC Symbol;Acc:HGNC:4426]
78. HBE 329974 0.757 - - - - - - - - - 0.757 hemoglobin subunit epsilon
79. MSX2 ENSGALG00000038848 6950 0.757 - - - - - - - - 0.757 - msh homeobox 2 [Source:NCBI gene;Acc:395245]
80. CHAMP1 ENSGALG00000016813 508 0.757 - - - - 0.757 - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
81. ENSGALG00000023180 ENSGALG00000023180 83 0.756 - - - - - - 0.756 - - -
82. FOXK1 ENSGALG00000004460 1483 0.755 - - - - - - - - 0.755 - forkhead box K1 [Source:HGNC Symbol;Acc:HGNC:23480]
83. ENSGALG00000028422 ENSGALG00000028422 1504 0.754 - - - - - - - - - 0.754
84. ERAP1 ENSGALG00000014684 713 0.754 - - - - - - - - 0.754 - endoplasmic reticulum aminopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:18173]
85. DSP ENSGALG00000012790 17884 0.754 - - - - - - - - 0.754 - desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
86. MIA2 ENSGALG00000010189 1223 0.753 - - - - - - - - 0.753 - melanoma inhibitory activity 2, transcript variant X5
87. SLC9A9 ENSGALG00000002374 179 0.752 - - - - - - 0.752 - - - solute carrier family 9 member A9 [Source:NCBI gene;Acc:424772]
88. ZBTB7C ENSGALG00000033408 711 0.75 - - - - - - - 0.750 - - zinc finger and BTB domain containing 7C [Source:HGNC Symbol;Acc:HGNC:31700]
89. NUAK1 ENSGALG00000012662 411 0.75 - - - - - - - - 0.750 - NUAK family kinase 1 [Source:HGNC Symbol;Acc:HGNC:14311]
90. GLA ENSGALG00000004948 97 0.75 - - - - - - 0.750 - - - galactosidase alpha [Source:HGNC Symbol;Acc:HGNC:4296]
91. LLGL1 ENSGALG00000014408 15 0.75 - - 0.750 - - - - - - - LLGL1, scribble cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:6628]
92. PLEKHA1 ENSGALG00000034548 34 0.75 - - - - - - 0.750 - - - pleckstrin homology domain containing A1 [Source:HGNC Symbol;Acc:HGNC:14335]
93. MBSP MBSP 5634 0.749 - - - - - - - - 0.749 -
94. PLXNB2 ENSGALG00000039861 338 0.747 - - 0.747 - - - - - - - plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]
95. FAM3B ENSGALG00000016140 111 0.747 - - 0.747 - - - - - - - family with sequence similarity 3 member B [Source:HGNC Symbol;Acc:HGNC:1253]
96. CNKSR1 ENSGALG00000046299 195 0.746 - - 0.746 - - - - - - - connector enhancer of kinase suppressor of Ras 1 [Source:HGNC Symbol;Acc:HGNC:19700]
97. CREB5 ENSGALG00000038265 92 0.745 - - - - - - - - 0.745 - cAMP responsive element binding protein 5 [Source:HGNC Symbol;Acc:HGNC:16844]
98. FBXO25 ENSGALG00000016359 1547 0.745 - - - - - - - - 0.745 - F-box protein 25 [Source:HGNC Symbol;Acc:HGNC:13596]
99. USP37 ENSGALG00000011427 280 0.745 - - - - 0.745 - - - - - ubiquitin specific peptidase 37 [Source:NCBI gene;Acc:424216]
100. GALNT11 ENSGALG00000006233 210 0.743 - - 0.743 - - - - - - - polypeptide N-acetylgalactosaminyltransferase 11 [Source:HGNC Symbol;Acc:HGNC:19875]

There are 113 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA