Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for HDX

Gene Name Gene ID Reads Annotation
HDX ENSDARG00000079382 513 highly divergent homeobox [Source:ZFIN;Acc:ZDB-GENE-140106-165]










Genes with expression patterns similar to HDX

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. HDX ENSDARG00000079382 513 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 highly divergent homeobox [Source:ZFIN;Acc:ZDB-GENE-140106-165]
2. thsd7ba ENSDARG00000095022 231 2.421 - 0.737 - - - - 0.714 - 0.970 thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
3. smg6 ENSDARG00000100481 493 1.954 - - 0.997 - - - - - 0.957 SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
4. zgc:113348 ENSDARG00000103795 1351 1.941 - - 0.988 - - - - - 0.953 zgc:113348 [Source:ZFIN;Acc:ZDB-GENE-050227-10]
5. rnf121 ENSDARG00000060282 1809 1.934 - - 0.965 - - - - - 0.969 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
6. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 1.923 - - 0.985 - - - - - 0.938 RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
7. pih1d2 ENSDARG00000014849 389 1.921 - 1.000 - - - - 0.921 - - PIH1 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041212-54]
8. phf10 ENSDARG00000070084 1210 1.915 - - 0.979 - - - - - 0.936 PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
9. ubl3b ENSDARG00000021556 1210 1.908 - - 0.991 - - - - - 0.917 ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
10. eya3 ENSDARG00000036100 1965 1.905 - - 0.974 - - - - - 0.931 EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
11. CABZ01087568.1 CABZ01087568.1 1487 1.855 - - 0.987 - - - - - 0.868
12. atg4a ENSDARG00000014531 481 1.85 - - 0.994 0.856 - - - - - autophagy related 4A, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-050522-430]
13. brms1lb ENSDARG00000018047 453 1.846 - - - - - - 0.892 - 0.954 BRMS1 like transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-081031-54]
14. DLC1 ENSDARG00000079317 2149 1.838 - - 0.980 - - - - - 0.858 DLC1 Rho GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-130206-12]
15. cpsf1 ENSDARG00000034178 2036 1.826 - - 0.966 - - - - - 0.860 cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]
16. nupl2 ENSDARG00000029043 105 1.82 - - - - - - 0.852 - 0.968 nucleoporin like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2292]
17. ube4b ENSDARG00000037017 8012 1.818 - - 0.975 0.843 - - - - - ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020205-1]
18. si:ch211-113e8.10 ENSDARG00000079631 498 1.809 - - - 0.857 - - - - 0.952 si:ch211-113e8.10 [Source:ZFIN;Acc:ZDB-GENE-090313-11]
19. rusc1 ENSDARG00000078125 617 1.795 - - - - - - 0.856 - 0.939 RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
20. mntb ENSDARG00000073988 1023 1.787 - - - 0.874 - - - - 0.913 MAX network transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-070820-8]
21. ftsjd2 ftsjd2 2694 1.775 - - 0.956 - - - - - 0.819
22. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.766 - - 0.922 - - - - - 0.844 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
23. ek1 ENSDARG00000020080 742 1.763 - - 0.987 - - - 0.776 - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
24. cars ENSDARG00000036164 2019 1.756 - - 0.958 - - - - - 0.798 cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
25. SON SON 510 1.747 - - 0.992 - - - 0.755 - -
26. sema6a ENSDARG00000102165 1401 1.743 - - 0.981 - - - 0.762 - - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:ZFIN;Acc:ZDB-GENE-030131-8004]
27. adipor1a ENSDARG00000002912, ENSDARG00000113136 796 1.735 - - - 0.819 - - - - 0.916 adiponectin receptor 1a [Source:ZFIN;Acc:ZDB-GENE-040718-169]
28. stap2a ENSDARG00000092810 591 1.723 - - - 0.801 - - 0.922 - - signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
29. tmem2 2572 1.719 - - 0.965 - - - - - 0.754 transmembrane protein 2, transcript variant X1
30. RSF1_2 RSF1_2 1343 1.716 - 0.752 0.964 - - - - - -
31. s100a1 ENSDARG00000015543 274 1.715 0.722 - 0.993 - - - - - - S100 calcium binding protein A1 [Source:ZFIN;Acc:ZDB-GENE-040916-1]
32. creg2 ENSDARG00000000666 643 1.713 - - - 0.763 - - - - 0.950 cellular repressor of E1A-stimulated genes 2 [Source:ZFIN;Acc:ZDB-GENE-041114-173]
33. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.712 - - 0.941 - - - - - 0.771 heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
34. foxd1 ENSDARG00000029179 726 1.701 - 0.706 0.995 - - - - - - forkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
35. prmt6 ENSDARG00000069706 484 1.7 - - - - 0.730 - - - 0.970 protein arginine methyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040914-7]
36. FRMPD3 ENSDARG00000074865, ENSDARG00000109705 276 1.697 - - - - - - 0.758 - 0.939 FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]
37. ZNF337_4 ZNF337_4 409 1.695 - - - - - - - 0.726 0.969
38. NHS NHS 409 1.691 - - - - - - 0.728 - 0.963
39. apopt1 ENSDARG00000092473 682 1.69 - - - 0.755 - - - - 0.935 apoptogenic 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-090313-66]
40. dnajc5aa ENSDARG00000042948 2885 1.688 - - 0.941 - - - 0.747 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
41. eef2a.1 ENSDARG00000042094 1781 1.683 - - - 0.721 - - - - 0.962 eukaryotic translation elongation factor 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-500]
42. atp1b4 ENSDARG00000053262 1337 1.675 - 0.911 - - - - 0.764 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
43. RABEPK ENSDARG00000112165 112 1.674 - - - - - 0.709 - - 0.965 Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
44. prkrip1 ENSDARG00000033126, ENSDARG00000113803 1634 1.667 - 0.728 - - - - - - 0.939 PRKR interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-111011-2]
45. CHL1 CHL1 1553 1.658 - - - - - - 0.847 - 0.811
46. ssbp4 ENSDARG00000056483 10196 1.658 - - 0.918 - - - - 0.740 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
47. gid8b ENSDARG00000037589 2121 1.637 - - - 0.700 - - - - 0.937 GID complex subunit 8 homolog b (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030515-4]
48. zgc:63637 zgc:63637 3636 1.636 - - - 0.797 - - - - 0.839
49. eps15l1a ENSDARG00000042670 1565 1.629 - - - 0.747 - - - - 0.882 epidermal growth factor receptor pathway substrate 15-like 1a [Source:ZFIN;Acc:ZDB-GENE-060503-274]
50. pcdh18a ENSDARG00000089805 1096 1.62 - - - - - - 0.801 - 0.819 protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
51. plcd3b ENSDARG00000079572 64 1.617 - 0.710 - - - - 0.907 - - phospholipase C, delta 3b [Source:ZFIN;Acc:ZDB-GENE-081222-2]
52. nploc4 ENSDARG00000100487 1262 1.611 - - - - - - 0.710 - 0.901 NPL4 homolog, ubiquitin recognition factor [Source:ZFIN;Acc:ZDB-GENE-030131-5658]
53. rcor2 ENSDARG00000008278 1678 1.61 - - - - - - 0.875 0.735 - REST corepressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1812]
54. pknox1.1 ENSDARG00000018765 2149 1.605 - - - - - - 0.705 - 0.900 pbx/knotted 1 homeobox 1.1 [Source:ZFIN;Acc:ZDB-GENE-020122-5]
55. CAPN15 ENSDARG00000060600 248 1.604 - - - 0.831 - - 0.773 - - calpain 15 [Source:ZFIN;Acc:ZDB-GENE-140106-70]
56. slc17a6b ENSDARG00000041150 823 1.602 - - - 0.850 - - 0.752 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
57. xpr1 xpr1 840 1.602 - - - - - - 0.763 - 0.839
58. rbfox3 rbfox3 1443 1.601 - - - - - - 0.743 - 0.858
59. zic2a ENSDARG00000015554 2860 1.599 - - 0.865 - - - 0.734 - - zic family member 2 (odd-paired homolog, Drosophila), a [Source:ZFIN;Acc:ZDB-GENE-000710-4]
60. nadl1.2 695 1.599 - - - - - - 0.700 - 0.899 neural adhesion molecule L1.2, transcript variant X1
61. KIF1A KIF1A 1686 1.595 - - - - - - 0.805 - 0.790
62. rheb ENSDARG00000090213 1432 1.578 - - - - - - 0.764 - 0.814 Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
63. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 1.578 - - 0.852 - - - 0.726 - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
64. SNORD94 SNORD94 57 1.575 - 0.726 - 0.849 - - - - -
65. ugt5c3 ENSDARG00000061439 142 1.568 - 0.718 - 0.850 - - - - - UDP glucuronosyltransferase 5 family, polypeptide C3 [Source:ZFIN;Acc:ZDB-GENE-050419-23]
66. jag1a ENSDARG00000030289 1275 1.554 - 0.852 - - - - 0.702 - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
67. fgd 377 1.553 - 0.766 - - - - 0.787 - - faciogenital dysplasia
68. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.553 - 0.732 - - - - 0.821 - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
69. U3 U3 287 1.549 - 0.754 - 0.795 - - - - -
70. sumo3b ENSDARG00000035993 3414 1.546 - - - 0.710 - - - - 0.836 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
71. enpp5 ENSDARG00000070625 550 1.543 - 0.776 - 0.767 - - - - - ectonucleotide pyrophosphatase/phosphodiesterase 5 [Source:ZFIN;Acc:ZDB-GENE-041014-10]
72. dpysl5a ENSDARG00000011141 1827 1.542 - 0.819 - - - - 0.723 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
73. msi1 ENSDARG00000010710 2634 1.54 - - - 0.836 - - - - 0.704 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
74. RBPMS ENSDARG00000099396 61 1.538 - 0.701 - - - - 0.837 - - RNA binding protein, mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-161017-145]
75. nbeaa ENSDARG00000070080 862 1.533 - - - - - - 0.719 0.814 - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
76. rnf25 ENSDARG00000027182, ENSDARG00000109462, ENSDARG00000114859 246 1.529 - 0.804 - - - - 0.725 - - ring finger protein 25 [Source:ZFIN;Acc:ZDB-GENE-040426-1581]
77. morc2 ENSDARG00000028539 3259 1.528 - - - 0.728 - - - - 0.800 MORC family CW-type zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-040822-40]
78. gria2b ENSDARG00000052765 188 1.521 - 0.742 - - - - 0.779 - - glutamate receptor, ionotropic, AMPA 2b [Source:ZFIN;Acc:ZDB-GENE-020125-4]
79. sox12 ENSDARG00000025847 681 1.52 - - - - - - 0.720 - 0.800 SRY (sex determining region Y)-box 12 [Source:ZFIN;Acc:ZDB-GENE-040724-33]
80. nrn1a ENSDARG00000071860 1311 1.518 - - - - - - 0.762 - 0.756 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
81. POLD4 POLD4 626 1.513 - - - 0.780 - - - 0.733 -
82. foxb1a ENSDARG00000089042 101 1.512 - 0.703 - - - - 0.809 - - forkhead box B1a [Source:ZFIN;Acc:ZDB-GENE-990616-47]
83. slc1a2b ENSDARG00000102453 3136 1.512 - - - - - - 0.750 - 0.762 solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
84. si:ch211-202e12.3 401 1.506 - - - - - - 0.798 0.708 - si:ch211-202e12.3, transcript variant X6
85. irx1b ENSDARG00000056594 2224 1.505 - - - - - - 0.730 - 0.775 iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
86. rad54l2 ENSDARG00000063031 821 1.501 - - - 0.768 - - - 0.733 - RAD54 like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3097]
87. stmn2b ENSDARG00000070537 1586 1.499 - 0.734 - - - - 0.765 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
88. u2af2b ENSDARG00000011740 6946 1.489 - - - - - - - 0.723 0.766 U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
89. hnrnpk ENSDARG00000018914 8841 1.487 - - 0.774 - - - - 0.713 - heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
90. sox21b ENSDARG00000008540 1460 1.487 - 0.746 - - - - 0.741 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
91. mpped2 ENSDARG00000034443, ENSDARG00000114674 527 1.486 - 0.734 - - - - 0.752 - - metallophosphoesterase domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8903]
92. cnrip1a ENSDARG00000091683 1491 1.483 - - - - - - 0.742 0.741 - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
93. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.479 - 0.737 - - - - 0.742 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
94. plagx ENSDARG00000036855 3768 1.472 - - - - - - 0.745 - 0.727 pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
95. npas3b npas3b 1446 1.471 - - - - - - 0.745 - 0.726
96. si:ch211-240g9.1 36 1.469 - 0.703 - - - - 0.766 - - si:ch211-240g9.1
97. si:ch211-106n13.3 ENSDARG00000052633 3 1.469 - 0.703 - - - - 0.766 - - si:ch211-106n13.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9088]
98. fam50a ENSDARG00000024895 3020 1.467 - - - 0.754 - - - 0.713 - family with sequence similarity 50, member A [Source:ZFIN;Acc:ZDB-GENE-050417-110]
99. bicc2 ENSDARG00000076557 77 1.467 - 0.703 - - - - 0.764 - - bicaudal C homolog 2 [Source:ZFIN;Acc:ZDB-GENE-110110-3]
100. neurog1 ENSDARG00000056130 3924 1.466 - - - - - - 0.730 - 0.736 neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]

There are 1779 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA