Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for HDAC8

Gene Name Gene ID Reads Annotation
HDAC8 ENSGALG00000004825 12066 histone deacetylase 8, transcript variant X2











Genes with expression patterns similar to HDAC8

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. HDAC8 ENSGALG00000004825 12066 9 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 1.000 1.000 histone deacetylase 8, transcript variant X2
2. CDCA4 ENSGALG00000011692 10381 1.929 - - - - 0.946 - 0.983 - - - cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
3. LGALS1 ENSGALG00000012420 13993 1.708 - - - - 0.959 - - 0.749 - - galectin 1 [Source:NCBI gene;Acc:396491]
4. UQCRH ENSGALG00000017380 55734 1.641 - - - - 0.915 - - 0.726 - - ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
5. FAT1 ENSGALG00000013579 6030 0.998 - - - - - - 0.998 - - - FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
6. EIF1B ENSGALG00000038646 9508 0.998 - - - - - - 0.998 - - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
7. ZEB1 ENSGALG00000007260 9277 0.998 - - - - - - 0.998 - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
8. FAM192A ENSGALG00000021473 10213 0.998 - - - - - - 0.998 - - - family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
9. MCM3 ENSGALG00000016676 16934 0.998 - - - - - - 0.998 - - - minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
10. WDHD1 ENSGALG00000012199 3570 0.998 - - - - - - 0.998 - - - WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
11. CCNYL1 ENSGALG00000008485 11958 0.998 - - - - - - 0.998 - - - cyclin Y like 1
12. MATR3 ENSGALG00000002478 12793 0.998 - - - - - - 0.998 - - - matrin 3 [Source:NCBI gene;Acc:373948]
13. ARHGAP32 ENSGALG00000043511 7916 0.998 - - - - - - 0.998 - - - Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
14. C9orf64 ENSGALG00000012589 6097 0.998 - - - - - - 0.998 - - - chromosome 9 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28144]
15. RAB12 ENSGALG00000033608 14160 0.998 - - - - - - 0.998 - - - RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
16. RNF141 ENSGALG00000029586 4962 0.997 - - - - - - 0.997 - - - ring finger protein 141 [Source:NCBI gene;Acc:423039]
17. DAPK3 ENSGALG00000037733 6215 0.997 - - - - - - 0.997 - - - death-associated protein kinase 3, transcript variant X2
18. USPL1 ENSGALG00000017079 6263 0.997 - - - - - - 0.997 - - - ubiquitin specific peptidase like 1 [Source:NCBI gene;Acc:395436]
19. LRPAP1 ENSGALG00000015612 3526 0.997 - - - - - - 0.997 - - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
20. CORO1C ENSGALG00000004901 7055 0.997 - - - - - - 0.997 - - - coronin 1C [Source:NCBI gene;Acc:416893]
21. Sep-06 Sep-06 5961 0.997 - - - - - - 0.997 - - -
22. EIF3D ENSGALG00000012529 40887 0.997 - - - - - - 0.997 - - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
23. EFTUD2 ENSGALG00000000988 17913 0.997 - - - - - - 0.997 - - - elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
24. CTBPL ENSGALG00000007642 14238 0.996 - - - - - - 0.996 - - - C-terminal binding protein-like [Source:NCBI gene;Acc:416354]
25. GPC1 ENSGALG00000040316 13364 0.996 - - - - - - 0.996 - - - glypican 1 [Source:NCBI gene;Acc:424770]
26. VSX1 ENSGALG00000037576 1517 0.996 - - - - - - 0.996 - - - visual system homeobox 1 [Source:NCBI gene;Acc:395537]
27. CNOT6 ENSGALG00000034316 10496 0.996 - - - - - - 0.996 - - - CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
28. CXCL12 ENSGALG00000041346 4128 0.995 - - - - - - 0.995 - - - C-X-C motif chemokine ligand 12 [Source:NCBI gene;Acc:395180]
29. TMEM18 ENSGALG00000028744 11779 0.995 - - - - - - 0.995 - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
30. MCM6 ENSGALG00000012348 12523 0.994 - - - - - - 0.994 - - - minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
31. INTS4 ENSGALG00000000091 5965 0.993 - - - - - - 0.993 - - - integrator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:25048]
32. SLC9A3R1 ENSGALG00000007650 13053 0.993 - - - - - - 0.993 - - - SLC9A3 regulator 1 [Source:NCBI gene;Acc:422108]
33. C15H12ORF49 C15H12ORF49 13250 0.993 - - - - - - 0.993 - - -
34. IFT20 ENSGALG00000005707 23973 0.992 - - - - - - 0.992 - - - intraflagellar transport 20 [Source:HGNC Symbol;Acc:HGNC:30989]
35. DNAJC7 ENSGALG00000042796 14597 0.992 - - - - - - 0.992 - - - DnaJ heat shock protein family (Hsp40) member C7 [Source:NCBI gene;Acc:428312]
36. RAP1B ENSGALG00000009927 26562 0.991 - - - - - - 0.991 - - - RAP1B, member of RAS oncogene family [Source:NCBI gene;Acc:417840]
37. DHFR ENSGALG00000026757 18478 0.989 - - - - - - 0.989 - - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
38. UBE2L3 ENSGALG00000036739 21401 0.989 - - - - - - 0.989 - - - ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
39. LRPPRC ENSGALG00000009967 17091 0.987 - - - - - - 0.987 - - - leucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
40. PPIG ENSGALG00000009839 24114 0.984 - - - - - - 0.984 - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
41. PDLIM4 ENSGALG00000039872 7823 0.983 - - - - - - 0.983 - - - PDZ and LIM domain 4 [Source:NCBI gene;Acc:395643]
42. HNRNPH3 ENSGALG00000003947 28724 0.983 - - - - - - 0.983 - - - heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
43. ZNF644 ENSGALG00000034253 28348 0.983 - - - - - - 0.983 - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
44. SMARCE1 ENSGALG00000003882 49063 0.979 - - - - - - 0.979 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:420047]
45. MEF2BNB MEF2BNB 5578 0.974 - - - - 0.974 - - - - -
46. UTP6 ENSGALG00000003260 4909 0.974 - - - - 0.974 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
47. SFXN5 ENSGALG00000016094 2678 0.971 - - - - 0.971 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
48. MYBL2 ENSGALG00000003503 15875 0.968 - - - - 0.968 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
49. RHOT1 ENSGALG00000003397 5149 0.967 - - - - 0.967 - - - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
50. CEP78 ENSGALG00000015179 5227 0.965 - - - - 0.965 - - - - - centrosomal protein 78 [Source:HGNC Symbol;Acc:HGNC:25740]
51. NEK6 ENSGALG00000001118 20333 0.964 - - - - 0.964 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
52. GSTO1 ENSGALG00000008409 7561 0.964 - - - - 0.964 - - - - - glutathione S-transferase omega 1 [Source:NCBI gene;Acc:423881]
53. SLMO2 SLMO2 9207 0.964 - - - - 0.964 - - - - -
54. PSMD3 ENSGALG00000033162 25615 0.963 - - - - 0.963 - - - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
55. SPEN ENSGALG00000036932 9688 0.962 - - - - 0.962 - - - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
56. NDUFS4 ENSGALG00000028026 25876 0.961 - - - - 0.961 - - - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
57. SDCBP ENSGALG00000015436 1228 0.959 - - - - 0.959 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
58. HNRNPM ENSGALG00000000377 40684 0.959 - - - - - - 0.959 - - - heterogeneous nuclear ribonucleoprotein M [Source:NCBI gene;Acc:420054]
59. PREP2 PREP2 238 0.958 - - - - 0.958 - - - - -
60. SMG7 ENSGALG00000004667 707 0.958 - - - - 0.958 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
61. YARS ENSGALG00000003563 11093 0.958 - - - - 0.958 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
62. RAMP3 ENSGALG00000037246 1187 0.958 - - - - 0.958 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
63. RBM6 ENSGALG00000035578 1690 0.958 - - - - 0.958 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
64. MYO9A ENSGALG00000033618 4505 0.957 - - - - 0.957 - - - - - myosin IXA, transcript variant X10
65. PRDM4 ENSGALG00000012619 876 0.957 - - - - 0.957 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
66. ANKRD9 ENSGALG00000011376 525 0.957 - - - - 0.957 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
67. RBM34 ENSGALG00000029915 5618 0.957 - - - - 0.957 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
68. GTF2H1 ENSGALG00000042340 1553 0.957 - - - - 0.957 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
69. HSF2 ENSGALG00000038420 5259 0.956 - - - - 0.956 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
70. BRF1 ENSGALG00000011705 3406 0.956 - - - - 0.956 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
71. SNX14 ENSGALG00000015831 2554 0.956 - - - - 0.956 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
72. LZIC ENSGALG00000002616 9052 0.956 - - - - 0.956 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
73. PTK2B ENSGALG00000016564 406 0.956 - - - - 0.956 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
74. MED8 ENSGALG00000009993 3095 0.956 - - - - 0.956 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
75. PHTF1 ENSGALG00000001845 3276 0.956 - - - - 0.956 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
76. PITHD1 ENSGALG00000003986 11470 0.955 - - - - 0.955 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
77. EDNRA ENSGALG00000010013 2472 0.955 - - - - 0.955 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
78. SYNE1 ENSGALG00000013505 2324 0.955 - - - - 0.955 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
79. NDUFV1 ENSGALG00000042809 6222 0.955 - - - - 0.955 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
80. SAP30 ENSGALG00000036252 2032 0.954 - - - - 0.954 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
81. ASAP2 ENSGALG00000016419 1393 0.954 - - - - 0.954 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
82. ETS1 ENSGALG00000001143 7284 0.953 - - - - 0.953 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
83. KIF11 ENSGALG00000030597 5528 0.953 - - - - 0.953 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
84. MRPL16 ENSGALG00000029419 8033 0.953 - - - - 0.953 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
85. TMF1 ENSGALG00000013408 3344 0.953 - - - - 0.953 - - - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
86. ENSGALG00000006569 ENSGALG00000006569 2169 0.953 - - - - 0.953 - - - - -
87. RAD54B ENSGALG00000043597 1699 0.953 - - - - 0.953 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
88. DGKZ ENSGALG00000008380 5389 0.953 - - - - 0.953 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
89. COQ5 ENSGALG00000007185 5614 0.952 - - - - 0.952 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
90. FNDC5 ENSGALG00000003567 3328 0.952 - - - - 0.952 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
91. WDR92 ENSGALG00000008760 3934 0.951 - - - - 0.951 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
92. SRP19 ENSGALG00000000218 14207 0.951 - - - - 0.951 - - - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
93. Mar-05 Mar-05 6330 0.951 - - - - 0.951 - - - - -
94. CDKN1B ENSGALG00000022980 4606 0.951 - - - - 0.951 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
95. ENSGALG00000027854 ENSGALG00000027854 5007 0.951 - - - - 0.951 - - - - -
96. PBRM1 ENSGALG00000037455 6450 0.95 - - - - 0.950 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
97. BAHD1 ENSGALG00000033675 1779 0.95 - - - - 0.950 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
98. TSPO2 ENSGALG00000003212 5141 0.95 - - - - 0.950 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
99. RALGDS ENSGALG00000003412 4478 0.95 - - - - 0.950 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
100. DENR ENSGALG00000003795 30805 0.95 - - - - 0.950 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]

There are 131 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA