Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for H3-IX_1

Gene Name Gene ID Reads Annotation
H3-IX_1 H3-IX_1 54392











Genes with expression patterns similar to H3-IX_1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. H3-IX_1 H3-IX_1 54392 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. HNRNPA2B1 ENSGALG00000011036 53662 1.734 - - - - 0.763 - 0.971 - - - heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
3. TCF7L2 ENSGALG00000008883 13688 1.619 - - - - 0.879 0.740 - - - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]
4. C15H12ORF49 C15H12ORF49 13250 1.594 - - - - 0.852 - - 0.742 - -
5. MRPL22 ENSGALG00000003919 2760 1.592 - - - - 0.857 - - 0.735 - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
6. NUCKS1 ENSGALG00000000708 80882 1.582 0.850 - 0.732 - - - - - - - nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
7. MAP1B ENSGALG00000014999 6288 1.581 0.727 - - - 0.854 - - - - - microtubule associated protein 1B
8. EEF2 ENSGALG00000033884 62036 1.58 0.720 - - - 0.860 - - - - - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
9. WWC3 ENSGALG00000034834 9392 1.493 - - 0.722 - - - - - 0.771 - WWC family member 3 [Source:HGNC Symbol;Acc:HGNC:29237]
10. MDK ENSGALG00000008367 316136 1.491 0.725 - 0.766 - - - - - - - midkine [Source:NCBI gene;Acc:423196]
11. HMGB1 ENSGALG00000042875 83509 1.477 0.722 - - - 0.755 - - - - - high mobility group box 1 [Source:NCBI gene;Acc:395724]
12. PNRC1 ENSGALG00000015780 75894 1.471 0.715 - - - - - - - 0.756 - proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
13. ATP6V1C1 ENSGALG00000034099 9898 1.448 - - - - - - 0.736 0.712 - - ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]
14. SRPR SRPR 21067 0.986 - - - - - - 0.986 - - -
15. USMG5 ENSGALG00000034645 33263 0.985 - - - - - - 0.985 - - - up-regulated during skeletal muscle growth 5 homolog (mouse) [Source:NCBI gene;Acc:423873]
16. MAPRE1 ENSGALG00000006657 64346 0.985 - - - - - - 0.985 - - - microtubule associated protein RP/EB family member 1 [Source:NCBI gene;Acc:419288]
17. UFM1 ENSGALG00000017042 15794 0.984 - - - - - - 0.984 - - - ubiquitin fold modifier 1 [Source:NCBI gene;Acc:418894]
18. RNF4 ENSGALG00000015668 15780 0.984 - - - - - - 0.984 - - - ring finger protein 4 [Source:NCBI gene;Acc:422886]
19. CKS1B ENSGALG00000028664 42261 0.984 - - - - - - 0.984 - - - CDC28 protein kinase regulatory subunit 1B [Source:NCBI gene;Acc:100134845]
20. NUS1 ENSGALG00000014899 13352 0.984 - - - - - - 0.984 - - - NUS1, dehydrodolichyl diphosphate synthase subunit [Source:HGNC Symbol;Acc:HGNC:21042]
21. ENSGALG00000023447 ENSGALG00000023447 17486 0.984 - - - - - - 0.984 - - -
22. PSMD7 ENSGALG00000000707 26350 0.984 - - - - - - 0.984 - - - proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565]
23. INPP5K ENSGALG00000002739 8120 0.983 - - - - - - 0.983 - - - inositol polyphosphate-5-phosphatase K [Source:NCBI gene;Acc:771549]
24. TPX2 ENSGALG00000006267 26087 0.983 - - - - - - 0.983 - - - TPX2, microtubule nucleation factor [Source:NCBI gene;Acc:395081]
25. BCKDHB ENSGALG00000040702 9373 0.982 - - - - - - 0.982 - - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:NCBI gene;Acc:395375]
26. FASN ENSGALG00000040896 17372 0.981 - - - - - - 0.981 - - - fatty acid synthase [Source:NCBI gene;Acc:396061]
27. RNF11 ENSGALG00000010539 8617 0.981 - - - - - - 0.981 - - - ring finger protein 11 [Source:NCBI gene;Acc:424631]
28. COL4A5 ENSGALG00000008141 15874 0.981 - - - - - - 0.981 - - - collagen type IV alpha 5 chain [Source:HGNC Symbol;Acc:HGNC:2207]
29. CTNNA1 ENSGALG00000002447 22379 0.981 - - - - - - 0.981 - - - catenin alpha 1 [Source:HGNC Symbol;Acc:HGNC:2509]
30. SESTD1 ENSGALG00000009031 13090 0.981 - - - - - - 0.981 - - - SEC14 and spectrin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18379]
31. SSB ENSGALG00000009677 25335 0.981 - - - - - - 0.981 - - - Sjogren syndrome antigen B [Source:NCBI gene;Acc:395268]
32. HEY1 ENSGALG00000035031 8795 0.98 - - - - - - 0.980 - - - hes related family bHLH transcription factor with YRPW motif 1 [Source:HGNC Symbol;Acc:HGNC:4880]
33. MRPS21 ENSGALG00000000456 35298 0.98 - - - - - - 0.980 - - - mitochondrial ribosomal protein S21 [Source:NCBI gene;Acc:426666]
34. RALGAPA1 ENSGALG00000010088 6005 0.979 - - - - - - 0.979 - - - Ral GTPase activating protein catalytic alpha subunit 1 [Source:NCBI gene;Acc:423327]
35. MAST4 ENSGALG00000014784 4153 0.979 - - - - - - 0.979 - - - microtubule associated serine/threonine kinase family member 4 [Source:HGNC Symbol;Acc:HGNC:19037]
36. TMEM258 ENSGALG00000038292 31116 0.978 - - - - - - 0.978 - - - transmembrane protein 258 [Source:NCBI gene;Acc:422964]
37. XRCC3 ENSGALG00000011533 3768 0.977 - - - - - - 0.977 - - - X-ray repair cross complementing 3 [Source:NCBI gene;Acc:423485]
38. CFL2 ENSGALG00000010027 16952 0.977 - - - - - - 0.977 - - - cofilin 2 [Source:NCBI gene;Acc:423320]
39. RANBP3 ENSGALG00000000577 8856 0.977 - - - - - - 0.977 - - - RAN binding protein 3 [Source:HGNC Symbol;Acc:HGNC:9850]
40. UFSP2 ENSGALG00000010601 5809 0.976 - - - - - - 0.976 - - - UFM1 specific peptidase 2 [Source:NCBI gene;Acc:422542]
41. ZNF385D ENSGALG00000011283 2578 0.976 - - - - - - 0.976 - - - zinc finger protein 385D [Source:HGNC Symbol;Acc:HGNC:26191]
42. AP3B2 2331 0.976 - - - - - - 0.976 - - - adaptor related protein complex 3 beta 2 subunit, transcript variant X7
43. CEP19 ENSGALG00000006405 1645 0.976 - - - - - - 0.976 - - - centrosomal protein 19 [Source:NCBI gene;Acc:424858]
44. GCC1 ENSGALG00000033149 1915 0.976 - - - - - - 0.976 - - - GRIP and coiled-coil domain containing 1 [Source:NCBI gene;Acc:430581]
45. RWDD2B ENSGALG00000015807 3601 0.976 - - - - - - 0.976 - - - RWD domain containing 2B [Source:HGNC Symbol;Acc:HGNC:1302]
46. ACAT1 ENSGALG00000017163 6239 0.976 - - - - - - 0.976 - - - acetyl-CoA acetyltransferase 1 [Source:NCBI gene;Acc:418968]
47. ENSGALG00000023608 ENSGALG00000023608 1538 0.976 - - - - - - 0.976 - - -
48. DGCR14 DGCR14 2633 0.976 - - - - - - 0.976 - - -
49. DNAH17 1389 0.975 - - - - - - 0.975 - - - dynein axonemal heavy chain 17, transcript variant X6
50. MSH2 ENSGALG00000008962 9709 0.971 - - - - - - 0.971 - - - mutS homolog 2 [Source:HGNC Symbol;Acc:HGNC:7325]
51. ERH ENSGALG00000017384 74926 0.92 - - - - - - 0.920 - - - ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
52. EIF3H ENSGALG00000040522 39919 0.917 - - - - 0.917 - - - - - eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
53. DCTN3 ENSGALG00000021365 22839 0.903 - - - - - - 0.903 - - - dynactin subunit 3 [Source:NCBI gene;Acc:427404]
54. SMC3 ENSGALG00000008585 16618 0.902 - - - - 0.902 - - - - - structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
55. PUF60 ENSGALG00000039901 26902 0.897 - - - - 0.897 - - - - - poly(U) binding splicing factor 60 [Source:NCBI gene;Acc:426402]
56. BRP44L BRP44L 30452 0.897 - - - - 0.897 - - - - -
57. ENSGALG00000000360 ENSGALG00000000360 15320 0.894 - - - - 0.894 - - - - -
58. RPS6 ENSGALG00000015082 307412 0.893 - - - - 0.893 - - - - - ribosomal protein S6 [Source:NCBI gene;Acc:396148]
59. EPFIP1L ENSGALG00000007683 18050 0.893 - - - - 0.893 - - - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
60. SMNDC1 ENSGALG00000008561 14415 0.887 - - - - 0.887 - - - - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
61. CREPT CREPT 17142 0.886 - - - - 0.886 - - - - -
62. ENSGALG00000026041 ENSGALG00000026041 13390 0.885 - - - - 0.885 - - - - -
63. MCM4 ENSGALG00000012915 13151 0.883 - - - - 0.883 - - - - - minichromosome maintenance complex component 4
64. PSMB2 ENSGALG00000026421 51885 0.882 - - - - 0.882 - - - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
65. M6PR ENSGALG00000031681 9442 0.882 - - - - 0.882 - - - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
66. AHCY ENSGALG00000033677 35555 0.881 - - - - 0.881 - - - - - adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
67. LUC7L2 ENSGALG00000036238 11817 0.88 - - - - 0.880 - - - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
68. RALB ENSGALG00000026493 14590 0.879 - - - - 0.879 - - - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
69. TM2D2 ENSGALG00000003356 7088 0.879 - - - - 0.879 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
70. ABCF2 ENSGALG00000034573 15639 0.879 - - - - 0.879 - - - - - ATP binding cassette subfamily F member 2 [Source:NCBI gene;Acc:426038]
71. TMEM18 ENSGALG00000028744 11779 0.878 - - - - 0.878 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
72. RBM26 ENSGALG00000016910 13769 0.877 - - - - 0.877 - - - - - RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327]
73. TRIM33 ENSGALG00000001976 7404 0.876 - - - - 0.876 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
74. MTF2 ENSGALG00000043087 15225 0.875 - - - - 0.875 - - - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
75. FAM98A ENSGALG00000010428 9585 0.874 - - - - 0.874 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
76. SEC63 ENSGALG00000015308 11596 0.873 - - - - 0.873 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
77. INCENP ENSGALG00000007537 16617 0.873 - - - - 0.873 - - - - - inner centromere protein [Source:NCBI gene;Acc:396270]
78. OAF ENSGALG00000006715 12518 0.872 - - - - 0.872 - - - - - out at first homolog [Source:NCBI gene;Acc:395161]
79. NUP37 ENSGALG00000012759 9985 0.872 - - - - 0.872 - - - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
80. THBS1 ENSGALG00000009626 3521 0.871 - - - - 0.871 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
81. PSMD14 ENSGALG00000011128 13335 0.871 - - - - 0.871 - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
82. CCDC59 ENSGALG00000028648 9272 0.87 - - - - 0.870 - - - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
83. ATP5C1 53961 0.87 - - - - 0.870 - - - - - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
84. ETF1 ENSGALG00000002262 14560 0.869 - - - - 0.869 - - - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
85. USP1 ENSGALG00000010957 8297 0.868 - - - - 0.868 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
86. BCL9 ENSGALG00000037655 4620 0.868 - - - - 0.868 - - - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
87. MRPS11 ENSGALG00000006777 16009 0.868 - - - - 0.868 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
88. C4orf27 C4orf27 16724 0.867 - - - - 0.867 - - - - -
89. RILPL2 ENSGALG00000003321 5632 0.867 - - - - 0.867 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
90. NOL6 ENSGALG00000030730 7191 0.867 - - - - 0.867 - - - - - nucleolar protein 6
91. DNAJC2 ENSGALG00000008249 28064 0.867 - - - - 0.867 - - - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
92. UBE2G2 ENSGALG00000005667 12689 0.866 - - - - 0.866 - - - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
93. SAMM50 ENSGALG00000014194 20437 0.866 - - - - 0.866 - - - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
94. TMEM39B ENSGALG00000003287 4125 0.865 - - - - 0.865 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
95. COX5A ENSGALG00000014121 55281 0.865 - - - - 0.865 - - - - - cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
96. MED1 ENSGALG00000001708 9556 0.865 - - - - 0.865 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
97. WHSC1L1 4065 0.864 - - - - 0.864 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
98. TBRG4 ENSGALG00000038102 9269 0.864 - - - - 0.864 - - - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
99. RPS10 ENSGALG00000002813 541909 0.864 - - - - - - 0.864 - - - ribosomal protein S10 [Source:NCBI gene;Acc:419904]
100. UQCRC2 ENSGALG00000002490 23477 0.863 - - - - 0.863 - - - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]

There are 152 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA