Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for GABPA

Gene Name Gene ID Reads Annotation
GABPA ENSGALG00000015763 11567 GA binding protein transcription factor subunit alpha [Source:NCBI gene;Acc:418478]











Genes with expression patterns similar to GABPA

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. GABPA ENSGALG00000015763 11567 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 GA binding protein transcription factor subunit alpha [Source:NCBI gene;Acc:418478]
2. DNA2 ENSGALG00000004037 5426 1.598 - - - - - - 0.820 0.778 - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
3. ACO2 ENSGALG00000011950 30387 1.487 - - - - 0.718 - 0.769 - - - aconitase 2 [Source:NCBI gene;Acc:374009]
4. UBR7 ENSGALG00000010842 16488 0.95 - - - - - - 0.950 - - - Gallus gallus ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001318461]
5. PEBP1 ENSGALG00000007403 77502 0.927 - - - - - - 0.927 - - - phosphatidylethanolamine binding protein 1 [Source:NCBI gene;Acc:416990]
6. TP53BP2 ENSGALG00000042816 12368 0.918 - - - - - - 0.918 - - - tumor protein p53 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:12000]
7. TCP1 ENSGALG00000011637 73216 0.914 - - - - - - 0.914 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
8. PSMA6 ENSGALG00000010060 26517 0.914 - - - - - - 0.914 - - - proteasome subunit alpha 6 [Source:NCBI gene;Acc:423326]
9. PSMC2 ENSGALG00000008236 25980 0.913 - - - - - - 0.913 - - - proteasome 26S subunit, ATPase 2 [Source:NCBI gene;Acc:417716]
10. PTBP1 ENSGALG00000001962 66983 0.906 - - - - - - 0.906 - - - polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
11. COPE ENSGALG00000003153 19444 0.903 - - - - - - 0.903 - - - coatomer protein complex subunit epsilon [Source:NCBI gene;Acc:420117]
12. DYNC1LI1 ENSGALG00000011491 11011 0.902 - - - - - - 0.902 - - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
13. PRMT3 ENSGALG00000003958 14160 0.901 - - - - - - 0.901 - - - protein arginine methyltransferase 3 [Source:NCBI gene;Acc:422975]
14. MRPL44 ENSGALG00000003067 15256 0.901 - - - - - - 0.901 - - - mitochondrial ribosomal protein L44 [Source:NCBI gene;Acc:424795]
15. PEPD ENSGALG00000004899 9785 0.9 - - - - - - 0.900 - - - peptidase D [Source:NCBI gene;Acc:415776]
16. ID2 ENSGALG00000035016 22120 0.9 - - - - - - 0.900 - - - inhibitor of DNA binding 2, HLH protein [Source:NCBI gene;Acc:395852]
17. PSMB3 ENSGALG00000001597 22588 0.897 - - - - - - 0.897 - - - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]
18. MRPL19 ENSGALG00000016731 22670 0.895 - - - - - - 0.895 - - - mitochondrial ribosomal protein L19, transcript variant X1
19. LAP3 ENSGALG00000006334 21076 0.894 - - - - - - 0.894 - - - leucine aminopeptidase 3 [Source:NCBI gene;Acc:425306]
20. TALDO1 ENSGALG00000037195 30673 0.892 - - - - - - 0.892 - - - transaldolase 1 [Source:NCBI gene;Acc:423019]
21. CLTA ENSGALG00000015326 26867 0.891 - - - - - - 0.891 - - - clathrin light chain A [Source:NCBI gene;Acc:427284]
22. COX7A2L ENSGALG00000037996 13646 0.891 - - - - - - 0.891 - - - cytochrome c oxidase subunit 7A2 like [Source:NCBI gene;Acc:421392]
23. RNPS1 ENSGALG00000009288 13588 0.89 - - - - - - - 0.890 - - RNA binding protein with serine rich domain 1 [Source:HGNC Symbol;Acc:HGNC:10080]
24. STK4 ENSGALG00000004098 11366 0.889 - - - - - - 0.889 - - - serine/threonine kinase 4 [Source:NCBI gene;Acc:419187]
25. SFT2D1 ENSGALG00000020005 10855 0.888 - - - - - - 0.888 - - - SFT2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21102]
26. SOD2 ENSGALG00000011661 13178 0.888 - - - - - - 0.888 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
27. ENSGALG00000007509 ENSGALG00000007509 18441 0.882 - - - - - - 0.882 - - -
28. LARP1 ENSGALG00000040109 14808 0.882 - - - - - - 0.882 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
29. SPTBN1 ENSGALG00000029512 18579 0.882 - - - - - - 0.882 - - - spectrin beta, non-erythrocytic 1 [Source:NCBI gene;Acc:421216]
30. MINOS1 ENSGALG00000004039 37740 0.881 - - - - - - 0.881 - - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
31. MGST1 ENSGALG00000013098 17632 0.879 - - - - - - 0.879 - - - microsomal glutathione S-transferase 1 [Source:NCBI gene;Acc:418178]
32. AIRC AIRC 15851 0.879 - - - - - - 0.879 - - -
33. CENPF ENSGALG00000009690 10429 0.877 - - - - - - 0.877 - - - centromere protein F [Source:NCBI gene;Acc:395357]
34. SIRT1 ENSGALG00000002761 9028 0.875 - - - - - - 0.875 - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
35. TM9SF3 ENSGALG00000005534 15290 0.875 - - - - - - 0.875 - - - transmembrane 9 superfamily member 3
36. NRD1 NRD1 10827 0.873 - - - - - - 0.873 - - -
37. SDF4 ENSGALG00000001872 6382 0.873 - - - - - - 0.873 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
38. TKT ENSGALG00000005309 19801 0.872 - - - - - - 0.872 - - - transketolase [Source:HGNC Symbol;Acc:HGNC:11834]
39. TRAM1 ENSGALG00000041112 22876 0.87 - - - - - - 0.870 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
40. PMM2 ENSGALG00000007326 8260 0.87 - - - - - - 0.870 - - - phosphomannomutase 2 [Source:NCBI gene;Acc:427679]
41. UPF1 ENSGALG00000003220 9496 0.867 - - - - - - 0.867 - - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
42. NAA25 ENSGALG00000041821 12729 0.866 - - - - - - 0.866 - - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:NCBI gene;Acc:416883]
43. NDUFA9 ENSGALG00000017282 14358 0.865 - - - - - - 0.865 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
44. STX2 ENSGALG00000002536 10438 0.862 - - - - - - 0.862 - - - syntaxin 2 [Source:NCBI gene;Acc:378895]
45. CLPTM1L ENSGALG00000013187 9733 0.862 - - - - - - 0.862 - - - CLPTM1 like [Source:NCBI gene;Acc:420973]
46. HDGFL3 ENSGALG00000006036 13576 0.862 - - - - - - 0.862 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
47. ACAA2 ENSGALG00000031142 29220 0.862 - - - - - - 0.862 - - - acetyl-CoA acyltransferase 2 [Source:NCBI gene;Acc:426847]
48. SNORA72 SNORA72 27695 0.862 - - - - - - 0.862 - - -
49. WBP11 ENSGALG00000011745 11182 0.861 - - - - - - 0.861 - - - WW domain binding protein 11, transcript variant X1
50. BPTF ENSGALG00000038222 7521 0.86 - - - - - - 0.860 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
51. XRN1 ENSGALG00000002706 4014 0.859 - - - - - - 0.859 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
52. KIF20A ENSGALG00000035030 10249 0.858 - - - - - - 0.858 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
53. HN1 HN1 34386 0.857 - - - - - - 0.857 - - -
54. CREPT CREPT 17142 0.856 - - - - - - 0.856 - - -
55. RCC2 ENSGALG00000031684 28067 0.856 - - - - - - 0.856 - - - regulator of chromosome condensation 2 [Source:HGNC Symbol;Acc:HGNC:30297]
56. ARL6IP5 ENSGALG00000038904 12956 0.856 - - - - - - 0.856 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
57. ADH5 ENSGALG00000012245 38217 0.855 - - - - - - 0.855 - - - alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
58. BTAF1 ENSGALG00000030598 3556 0.854 - - - - - - 0.854 - - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
59. SF3A3 ENSGALG00000001540 9664 0.853 - - - - - - 0.853 - - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
60. KIF15 ENSGALG00000036645 9946 0.853 - - - - - - 0.853 - - - kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
61. POR ENSGALG00000002053 5223 0.853 - - - - - - 0.853 - - - cytochrome p450 oxidoreductase [Source:NCBI gene;Acc:417520]
62. GCLM ENSGALG00000005782 15789 0.852 - - - - - - 0.852 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
63. MAGOH 28688 0.851 - - - - - - 0.851 - - - mago homolog, exon junction complex core component
64. CNOT7 ENSGALG00000013649 23435 0.85 - - - - - - 0.850 - - - CCR4-NOT transcription complex subunit 7 [Source:NCBI gene;Acc:422733]
65. FAM96B 14435 0.849 - - - - - - 0.849 - - - family with sequence similarity 96 member B
66. ARNT2 ENSGALG00000006445 7050 0.848 - - - - - - 0.848 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
67. KARS ENSGALG00000000907 51247 0.847 - - - - - - 0.847 - - - lysyl-tRNA synthetase [Source:NCBI gene;Acc:415885]
68. RPA1 ENSGALG00000003072 8023 0.845 - - - - - - 0.845 - - - replication protein A1 [Source:NCBI gene;Acc:417563]
69. ZMYND11 ENSGALG00000006599 5740 0.844 - - - - - - 0.844 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
70. MRE11A MRE11A 5754 0.839 - - - - - - 0.839 - - -
71. USP6NL ENSGALG00000035563 2202 0.837 - - - - - - - 0.837 - - USP6 N-terminal like [Source:NCBI gene;Acc:419104]
72. ATRX ENSGALG00000007843 34172 0.837 - - - - - - 0.837 - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
73. RBM12B ENSGALG00000035129 4314 0.835 - - - - - - 0.835 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
74. PRPS1 ENSGALG00000004908 27994 0.833 - - - - - - 0.833 - - - phosphoribosyl pyrophosphate synthetase 1
75. DNAJC15 ENSGALG00000016965 9163 0.832 - - - - - - 0.832 - - - DnaJ heat shock protein family (Hsp40) member C15 [Source:NCBI gene;Acc:418838]
76. MRPS11 ENSGALG00000006777 16009 0.831 - - - - - - 0.831 - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
77. CCND1 ENSGALG00000007555 6715 0.83 - - - - - - 0.830 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
78. COG5 ENSGALG00000042764 4205 0.83 - - - - - - - 0.830 - - component of oligomeric golgi complex 5 [Source:NCBI gene;Acc:417704]
79. GFM1 ENSGALG00000009634 7213 0.829 - - - - - - 0.829 - - - G elongation factor mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:13780]
80. PPP3R1 ENSGALG00000023648 3417 0.829 - - - - - - 0.829 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
81. OGFOD1 6926 0.828 - - - - - - 0.828 - - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
82. VMP1 ENSGALG00000005160 12859 0.828 - - - - - - 0.828 - - - vacuole membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29559]
83. E2F6 ENSGALG00000016454 4747 0.828 - - - - - - 0.828 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
84. UBA3 ENSGALG00000013410 6923 0.826 - - - - - - 0.826 - - - ubiquitin like modifier activating enzyme 3 [Source:HGNC Symbol;Acc:HGNC:12470]
85. ATAD2 ENSGALG00000034348 4440 0.825 - - - - - - - 0.825 - - ATPase family, AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]
86. H2AFY_1 ENSGALG00000040141 4895 0.824 - - - - - - 0.824 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
87. GTF2E1 ENSGALG00000042320 7712 0.824 - - - - - - 0.824 - - - general transcription factor IIE subunit 1 [Source:HGNC Symbol;Acc:HGNC:4650]
88. SEMA4B ENSGALG00000008297 11202 0.824 - - - - - - 0.824 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
89. TTPAL ENSGALG00000004244 2734 0.824 - - - - - - - 0.824 - - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
90. HAUS6 ENSGALG00000015091 9671 0.822 - - - - - - - 0.822 - - HAUS augmin like complex subunit 6 [Source:NCBI gene;Acc:427238]
91. NDUFB10 ENSGALG00000005465 41984 0.822 - - - - - - 0.822 - - - NADH:ubiquinone oxidoreductase subunit B10 [Source:HGNC Symbol;Acc:HGNC:7696]
92. EI24 ENSGALG00000038097 24081 0.822 - - - - - - 0.822 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
93. NDUFS6 ENSGALG00000013191 15874 0.821 - - - - - - 0.821 - - - NADH:ubiquinone oxidoreductase subunit S6 [Source:HGNC Symbol;Acc:HGNC:7713]
94. XRCC3 ENSGALG00000011533 3768 0.82 - - - - - - - 0.820 - - X-ray repair cross complementing 3 [Source:NCBI gene;Acc:423485]
95. ENSGALG00000027854 ENSGALG00000027854 5007 0.82 - - - - - - 0.820 - - -
96. NARS ENSGALG00000040506 9506 0.82 - - - - - - 0.820 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
97. SLC35E2B 7675 0.819 - - - - - - - 0.819 - - solute carrier family 35 member E2B
98. CHCHD6 ENSGALG00000006056 6121 0.819 - - - - - - - 0.819 - - coiled-coil-helix-coiled-coil-helix domain containing 6 [Source:HGNC Symbol;Acc:HGNC:28184]
99. WBSCR16 WBSCR16 2248 0.819 - - - - - - - 0.819 - -
100. CNEP1R1 ENSGALG00000029793 6536 0.819 - - - - - - - 0.819 - - CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:NCBI gene;Acc:415736]

There are 229 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA