Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for FXN

Gene Name Gene ID Reads Annotation
FXN ENSGALG00000015108 1867 frataxin [Source:HGNC Symbol;Acc:HGNC:3951]











Genes with expression patterns similar to FXN

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. FXN ENSGALG00000015108 1867 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 frataxin [Source:HGNC Symbol;Acc:HGNC:3951]
2. ATL1 ENSGALG00000012339 3789 1.793 - - - - - - - 0.998 - 0.795 atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
3. ARHGAP11A ENSGALG00000009731 6817 1.725 - - - - - - - 0.989 - 0.736 Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
4. BSDC1 ENSGALG00000003405 3701 1.693 - - - - - - - 0.963 - 0.730 BSD domain containing 1 [Source:NCBI gene;Acc:419658]
5. KIAA0895L 1739 1 - - - - - - - 1.000 - - KIAA0895 like, transcript variant X4
6. SCLT1 2397 1 - - - - - - - 1.000 - - sodium channel and clathrin linker 1, transcript variant X6
7. MADD ENSGALG00000008181 2273 1 - - - - - - - 1.000 - - MAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]
8. GGA3 ENSGALG00000007992 3566 1 - - - - - - - 1.000 - - golgi associated, gamma adaptin ear containing, ARF binding protein 3 [Source:NCBI gene;Acc:422121]
9. CARKD CARKD 2914 1 - - - - - - - 1.000 - -
10. RNF113A ENSGALG00000000538 3985 0.999 - - - - - - - 0.999 - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
11. UBALD1 ENSGALG00000007619 8536 0.999 - - - - - - - 0.999 - - UBA like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
12. RRN3 ENSGALG00000041989 3934 0.999 - - - - - - - 0.999 - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
13. FAM125B FAM125B 2953 0.999 - - - - - - - 0.999 - -
14. HBXIP HBXIP 8637 0.999 - - - - - - - 0.999 - -
15. YTHDC2 2266 0.999 - - - - - - - 0.999 - - YTH domain containing 2, transcript variant X3
16. JKAMP ENSGALG00000012009 5781 0.999 - - - - - - - 0.999 - - JNK1/MAPK8-associated membrane protein [Source:NCBI gene;Acc:423530]
17. NPFF1 NPFF1 3177 0.999 - - - - - - - 0.999 - -
18. ENSGALG00000010034 ENSGALG00000010034 3293 0.999 - - - - - - - 0.999 - -
19. PDCD2L 4843 0.999 - - - - - - - 0.999 - - programmed cell death 2-like
20. TMTC2 ENSGALG00000010975 7040 0.998 - - - - - - - 0.998 - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
21. CHMP5 ENSGALG00000013160 13347 0.997 - - - - - - - 0.997 - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
22. RIC8A ENSGALG00000004191 6094 0.997 - - - - - - - 0.997 - - RIC8 guanine nucleotide exchange factor A [Source:NCBI gene;Acc:422987]
23. DDX24 ENSGALG00000010884 5485 0.997 - - - - - - - 0.997 - - DEAD-box helicase 24 [Source:HGNC Symbol;Acc:HGNC:13266]
24. PGM1 ENSGALG00000011016 3391 0.997 - - - - - - - 0.997 - - phosphoglucomutase 1 [Source:NCBI gene;Acc:424691]
25. RBFA ENSGALG00000036067 6542 0.997 - - - - - - - 0.997 - - ribosome binding factor A (putative) [Source:NCBI gene;Acc:420806]
26. EIF3D ENSGALG00000012529 40887 0.996 - - - - - - - 0.996 - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
27. CHTOP ENSGALG00000042129 24112 0.99 - - - - - - - 0.990 - - chromatin target of PRMT1 [Source:HGNC Symbol;Acc:HGNC:24511]
28. NECAP1 ENSGALG00000037656 5181 0.989 - - - - - - - 0.989 - - NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:HGNC:24539]
29. CASP3 ENSGALG00000010638 11572 0.989 - - - - - - - 0.989 - - caspase 3 [Source:NCBI gene;Acc:395476]
30. MMADHC ENSGALG00000012473 9026 0.987 - - - - - - - 0.987 - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
31. NDUFA2 ENSGALG00000040626 27899 0.978 - - - - - - - 0.978 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:NCBI gene;Acc:768860]
32. MRPS17 ENSGALG00000002379 30243 0.971 - - - - - - - 0.971 - - mitochondrial ribosomal protein S17 [Source:NCBI gene;Acc:417538]
33. SQLE ENSGALG00000036915 4172 0.97 - - - - - - - 0.970 - - squalene epoxidase [Source:NCBI gene;Acc:420335]
34. NOC4L ENSGALG00000002272 9644 0.969 - - - - - - - 0.969 - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
35. PRKG1 ENSGALG00000003805 4654 0.966 - - - - - - - 0.966 - - protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
36. SMC3 ENSGALG00000008585 16618 0.965 - - - - - - - 0.965 - - structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
37. CENPP ENSGALG00000004687 6707 0.956 - - - - - - - 0.956 - - centromere protein P [Source:NCBI gene;Acc:415952]
38. GCLM ENSGALG00000005782 15789 0.954 - - - - - - - 0.954 - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
39. COL4A6 ENSGALG00000008266 6374 0.933 - - - - - - - 0.933 - - collagen type IV alpha 6 chain [Source:HGNC Symbol;Acc:HGNC:2208]
40. ALYREF ENSGALG00000007237 48479 0.929 - - - - - - - 0.929 - - Aly/REF export factor [Source:NCBI gene;Acc:769169]
41. UTP11L UTP11L 11927 0.902 - - - - - - - 0.902 - -
42. HMGN2 HMGN2 158543 0.884 - - - - - - - 0.884 - -
43. CCDC59 ENSGALG00000028648 9272 0.88 - - - - - - - 0.880 - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
44. SEC11A ENSGALG00000037553 32123 0.878 - - - - - - - 0.878 - - SEC11 homolog A, signal peptidase complex subunit [Source:NCBI gene;Acc:415334]
45. PIK3IP1 ENSGALG00000006942 8388 0.854 - - - - - - - 0.854 - - phosphoinositide-3-kinase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:24942]
46. AP1M1 ENSGALG00000003959 31761 0.849 - - - - - - - 0.849 - - adaptor related protein complex 1 subunit mu 1 [Source:NCBI gene;Acc:420149]
47. PITX2 ENSGALG00000042492 20419 0.847 - - - - - - - 0.847 - - paired like homeodomain 2 [Source:NCBI gene;Acc:395862]
48. SELT SELT 25524 0.845 - - - - - - - 0.845 - -
49. MAPRE1 ENSGALG00000006657 64346 0.844 - - - - - - - 0.844 - - microtubule associated protein RP/EB family member 1 [Source:NCBI gene;Acc:419288]
50. PRPS1 ENSGALG00000004908 27994 0.841 - - - - - - - 0.841 - - phosphoribosyl pyrophosphate synthetase 1
51. VWC2 ENSGALG00000013081 492 0.841 - - - - - - - - - 0.841 von Willebrand factor C domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30200]
52. EIF3E ENSGALG00000037067 36561 0.829 - - - - - - - 0.829 - - eukaryotic translation initiation factor 3 subunit E [Source:NCBI gene;Acc:420272]
53. SNX30 ENSGALG00000015660 1087 0.826 - - - - - - - - - 0.826 sorting nexin family member 30 [Source:HGNC Symbol;Acc:HGNC:23685]
54. NDUFA4 ENSGALG00000025999 53323 0.825 - - - - - - - 0.825 - - NDUFA4, mitochondrial complex associated [Source:NCBI gene;Acc:772135]
55. EBNA1BP2 ENSGALG00000009045 17453 0.824 - - - - - - - 0.824 - - EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
56. CEP76 ENSGALG00000013858 1809 0.819 - - - - - - - - - 0.819 centrosomal protein 76
57. CDC34 ENSGALG00000024332 4562 0.818 - - - - - - - 0.818 - - cell division cycle 34 [Source:HGNC Symbol;Acc:HGNC:1734]
58. PTPN11 ENSGALG00000004821 2658 0.818 - - - - - - - - - 0.818 protein tyrosine phosphatase, non-receptor type 11 [Source:NCBI gene;Acc:395815]
59. SSB ENSGALG00000009677 25335 0.815 - - - - - - - 0.815 - - Sjogren syndrome antigen B [Source:NCBI gene;Acc:395268]
60. MIB1 ENSGALG00000014974 3583 0.811 - - - - - - - - - 0.811 mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
61. CSRNP1 ENSGALG00000027905 3141 0.807 - - - - - - - - - 0.807 cysteine and serine rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
62. NUP188 ENSGALG00000043394 9288 0.805 - - - - - - - 0.805 - - nucleoporin 188 [Source:NCBI gene;Acc:417198]
63. YBX3 ENSGALG00000031890 819 0.798 - - - - - - - - - 0.798 Y-box binding protein 3 [Source:NCBI gene;Acc:396371]
64. EIF4G2 ENSGALG00000005587 185529 0.796 - - - - - - - 0.796 - - eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
65. WDR18 ENSGALG00000021637 2629 0.789 - - - - - - 0.789 - - - WD repeat domain 18 [Source:NCBI gene;Acc:420100]
66. DPP6 ENSGALG00000041791 1237 0.785 - - - - - - - - - 0.785 dipeptidyl peptidase like 6 [Source:HGNC Symbol;Acc:HGNC:3010]
67. SRSF3 ENSGALG00000000533 51281 0.785 - - - - - - - 0.785 - - serine and arginine rich splicing factor 3 [Source:NCBI gene;Acc:419815]
68. SNRPF ENSGALG00000011409 23557 0.77 - - - - - - - 0.770 - - small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]
69. WWC1 ENSGALG00000001826 4666 0.769 - - - - - - - - - 0.769 WW and C2 domain containing 1 [Source:NCBI gene;Acc:416167]
70. MPPED1 ENSGALG00000014186 5726 0.765 - - - - - - - - - 0.765 metallophosphoesterase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1306]
71. RTN4 ENSGALG00000029261 45730 0.764 - - - - - - - 0.764 - - reticulon 4 [Source:NCBI gene;Acc:378790]
72. HAUS2 ENSGALG00000009111 5323 0.76 - - - - - - - 0.760 - - HAUS augmin like complex subunit 2 [Source:NCBI gene;Acc:423237]
73. TATDN1 ENSGALG00000041072 1585 0.759 - - - - - - - - - 0.759 TatD DNase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24220]
74. ARGLU1 ENSGALG00000016855 25633 0.753 - - - - - - - 0.753 - - arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
75. INTS1 ENSGALG00000004104 950 0.752 - - - - - - - - - 0.752 integrator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:24555]
76. AN1ZNF5L ENSGALG00000014589 21148 0.748 - - - - - - - 0.748 - - AN1-type zinc finger protein 5-like, transcript variant X2
77. SUGT1 ENSGALG00000016946 22881 0.748 - - - - - - - 0.748 - - SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:NCBI gene;Acc:418827]
78. CWC15 ENSGALG00000017207 30922 0.747 - - - - - - - 0.747 - - CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
79. THNSL2 ENSGALG00000015939 2184 0.746 - - - - - - - - - 0.746 threonine synthase like 2 [Source:HGNC Symbol;Acc:HGNC:25602]
80. TCOF1 ENSGALG00000005535 24554 0.745 - - - - - - - 0.745 - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
81. PLCL2 ENSGALG00000011248 162 0.745 - - - - - - - - - 0.745 phospholipase C like 2 [Source:HGNC Symbol;Acc:HGNC:9064]
82. DHFR ENSGALG00000026757 18478 0.745 - - - - - - - - - 0.745 dihydrofolate reductase [Source:NCBI gene;Acc:427317]
83. HSF2 ENSGALG00000038420 5259 0.741 - - - - - - - - - 0.741 heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
84. ENSGALG00000017589 ENSGALG00000017589 36 0.739 - - 0.739 - - - - - - -
85. MED27 ENSGALG00000003683 6808 0.738 - - - - - - - - - 0.738 mediator complex subunit 27 [Source:NCBI gene;Acc:417172]
86. Mar-06 Mar-06 1218 0.737 - - - - - - - - - 0.737
87. TCP11L1 ENSGALG00000011688 2427 0.737 - - - - - - - - - 0.737 t-complex 11 like 1 [Source:NCBI gene;Acc:421594]
88. MAB21L1 ENSGALG00000045052 1677 0.737 - - - - - - - - - 0.737 mab-21 like 1 [Source:NCBI gene;Acc:395208]
89. BIK ENSGALG00000014164 1139 0.736 - - - - - - - - - 0.736 BCL2 interacting killer [Source:NCBI gene;Acc:776149]
90. CLIP1 ENSGALG00000004467 1058 0.735 - - - - - - - - - 0.735 CAP-Gly domain containing linker protein 1 [Source:NCBI gene;Acc:395784]
91. TCN2 3959 0.735 - - - - - - - - - 0.735 transcobalamin 2
92. KDM6A ENSGALG00000016217 2302 0.732 - - - - - - - - - 0.732 lysine demethylase 6A, transcript variant X14
93. POLE2 ENSGALG00000012237 9023 0.728 - - - - - - - - - 0.728 DNA polymerase epsilon 2, accessory subunit [Source:NCBI gene;Acc:423567]
94. CXCL12 ENSGALG00000041346 4128 0.728 - - - - - - - - - 0.728 C-X-C motif chemokine ligand 12 [Source:NCBI gene;Acc:395180]
95. C11H16ORF87 ENSGALG00000017363 1148 0.727 - - 0.727 - - - - - - - chromosome 11 open reading frame, human C16orf87 [Source:NCBI gene;Acc:415747]
96. SF3B6 ENSGALG00000016501 28236 0.726 - - - - - - - 0.726 - - splicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
97. JOSD1 ENSGALG00000041766 1445 0.725 - - - - - - - - - 0.725 Josephin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28953]
98. ENSGALG00000006569 ENSGALG00000006569 2169 0.723 - - - - - - - - - 0.723
99. ZNF639 ENSGALG00000005944 6387 0.722 - - - - - - - - - 0.722 zinc finger protein 639 [Source:NCBI gene;Acc:425280]
100. SESN1 ENSGALG00000015286 2387 0.721 - - - - - - - - - 0.721 sestrin 1 [Source:HGNC Symbol;Acc:HGNC:21595]

There are 13 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA