Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for DHFR

Gene Name Gene ID Reads Annotation
DHFR ENSGALG00000026757 18478 dihydrofolate reductase [Source:NCBI gene;Acc:427317]











Genes with expression patterns similar to DHFR

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. DHFR ENSGALG00000026757 18478 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 dihydrofolate reductase [Source:NCBI gene;Acc:427317]
2. RAB12 ENSGALG00000033608 14160 1.882 - - - - 0.893 - 0.989 - - - RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
3. RAP1B ENSGALG00000009927 26562 1.875 - - - - 0.880 - 0.995 - - - RAP1B, member of RAS oncogene family [Source:NCBI gene;Acc:417840]
4. SLC9A3R1 ENSGALG00000007650 13053 1.838 - - - - - - 0.990 0.848 - - SLC9A3 regulator 1 [Source:NCBI gene;Acc:422108]
5. ZNF639 ENSGALG00000005944 6387 1.807 - - 0.835 - - - - 0.972 - - zinc finger protein 639 [Source:NCBI gene;Acc:425280]
6. GPC1 ENSGALG00000040316 13364 1.805 - - 0.813 - - - 0.992 - - - glypican 1 [Source:NCBI gene;Acc:424770]
7. DACH1 ENSGALG00000037015 5648 1.798 - - 0.827 - - - - 0.971 - - dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
8. SDAD1 ENSGALG00000011543 5191 1.793 - - 0.810 - - - - 0.983 - - SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]
9. LARP1 ENSGALG00000040109 14808 1.783 - - - - 0.935 - - 0.848 - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
10. PTTG1 17936 1.768 - - 0.844 - 0.924 - - - - - pituitary tumor-transforming 1, transcript variant X1
11. FAT1 ENSGALG00000013579 6030 1.763 - - 0.775 - - - 0.988 - - - FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
12. USPL1 ENSGALG00000017079 6263 1.751 - - 0.765 - - - 0.986 - - - ubiquitin specific peptidase like 1 [Source:NCBI gene;Acc:395436]
13. REST 2394 1.728 - - 0.816 - 0.912 - - - - - RE1 silencing transcription factor
14. RFWD3 2315 1.719 - - - - - - - 0.973 - 0.746 ring finger and WD repeat domain 3
15. CTBPL ENSGALG00000007642 14238 1.716 - - 0.729 - - - 0.987 - - - C-terminal binding protein-like [Source:NCBI gene;Acc:416354]
16. COG7 ENSGALG00000006156 4072 1.712 - - 0.805 - - - - 0.907 - - component of oligomeric golgi complex 7 [Source:NCBI gene;Acc:416578]
17. WTAP ENSGALG00000011660 10811 1.712 - - 0.877 - - - - 0.835 - - WT1 associated protein [Source:HGNC Symbol;Acc:HGNC:16846]
18. HCFC2 ENSGALG00000029616 4525 1.699 - - 0.718 - - - - 0.981 - - host cell factor C2 [Source:HGNC Symbol;Acc:HGNC:24972]
19. PTCD3 ENSGALG00000015773 3059 1.687 - - 0.820 - - - - 0.867 - - pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:24717]
20. LYPLA2 ENSGALG00000004002 3939 1.679 - - 0.707 - - - - 0.972 - - lysophospholipase II [Source:NCBI gene;Acc:419685]
21. RBM25 ENSGALG00000009332 10842 1.667 - - 0.808 - - - - 0.859 - - RNA binding motif protein 25 [Source:NCBI gene;Acc:423250]
22. STK3 ENSGALG00000032850 6339 1.64 - - 0.715 - 0.925 - - - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
23. EAPP ENSGALG00000010007 5080 1.628 - - 0.708 - 0.920 - - - - - E2F associated phosphoprotein [Source:NCBI gene;Acc:423319]
24. ZCCHC8 ENSGALG00000004486 3201 1.619 - - 0.752 - - - - 0.867 - - zinc finger CCHC-type containing 8 [Source:NCBI gene;Acc:416862]
25. MIB1 ENSGALG00000014974 3583 1.602 - - 0.863 - - - - - - 0.739 mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
26. YBX3 ENSGALG00000031890 819 1.595 - - 0.838 - - - - - - 0.757 Y-box binding protein 3 [Source:NCBI gene;Acc:396371]
27. KDM6A ENSGALG00000016217 2302 1.589 - - 0.835 - - - - - - 0.754 lysine demethylase 6A, transcript variant X14
28. SESN1 ENSGALG00000015286 2387 1.545 - - 0.807 - - - - - - 0.738 sestrin 1 [Source:HGNC Symbol;Acc:HGNC:21595]
29. METTL5 ENSGALG00000009676 3252 1.498 - - 0.779 - - - - - - 0.719 methyltransferase like 5 [Source:HGNC Symbol;Acc:HGNC:25006]
30. ACOX1 ENSGALG00000002159 2953 1.475 - - 0.751 - - - - - - 0.724 acyl-CoA oxidase 1 [Source:NCBI gene;Acc:417366]
31. HN1 HN1 34386 1.472 - - 0.771 - - - - 0.701 - -
32. RAD51AP1 ENSGALG00000017290 3807 1.472 - - 0.763 - - - - 0.709 - - RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]
33. STRBP ENSGALG00000029927 3516 1.47 - - 0.763 - - - - 0.707 - - spermatid perinuclear RNA binding protein [Source:NCBI gene;Acc:417105]
34. CEPT1 ENSGALG00000000142 4219 1.457 - - 0.715 - - - - - - 0.742 choline/ethanolamine phosphotransferase 1 [Source:NCBI gene;Acc:421152]
35. STAU1 ENSGALG00000004736 3828 1.433 - - 0.731 - - - - - - 0.702 staufen double-stranded RNA binding protein 1 [Source:NCBI gene;Acc:419213]
36. CNOT6 ENSGALG00000034316 10496 0.993 - - - - - - 0.993 - - - CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
37. DNAJC7 ENSGALG00000042796 14597 0.993 - - - - - - 0.993 - - - DnaJ heat shock protein family (Hsp40) member C7 [Source:NCBI gene;Acc:428312]
38. UBE2L3 ENSGALG00000036739 21401 0.992 - - - - - - 0.992 - - - ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
39. IFT20 ENSGALG00000005707 23973 0.99 - - - - - - 0.990 - - - intraflagellar transport 20 [Source:HGNC Symbol;Acc:HGNC:30989]
40. DAPK3 ENSGALG00000037733 6215 0.989 - - - - - - 0.989 - - - death-associated protein kinase 3, transcript variant X2
41. LRPPRC ENSGALG00000009967 17091 0.989 - - - - - - 0.989 - - - leucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
42. MCM3 ENSGALG00000016676 16934 0.989 - - - - - - 0.989 - - - minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
43. HDAC8 ENSGALG00000004825 12066 0.989 - - - - - - 0.989 - - - histone deacetylase 8, transcript variant X2
44. MATR3 ENSGALG00000002478 12793 0.988 - - - - - - 0.988 - - - matrin 3 [Source:NCBI gene;Acc:373948]
45. ARHGAP32 ENSGALG00000043511 7916 0.988 - - - - - - 0.988 - - - Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
46. PPP3CB ENSGALG00000005243 8794 0.988 - - - - - - - 0.988 - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
47. Sep-06 Sep-06 5961 0.987 - - - - - - 0.987 - - -
48. CDCA4 ENSGALG00000011692 10381 0.987 - - - - - - 0.987 - - - cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
49. C9orf64 ENSGALG00000012589 6097 0.987 - - - - - - 0.987 - - - chromosome 9 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28144]
50. FAM192A ENSGALG00000021473 10213 0.987 - - - - - - 0.987 - - - family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
51. CCNYL1 ENSGALG00000008485 11958 0.987 - - - - - - 0.987 - - - cyclin Y like 1
52. WDHD1 ENSGALG00000012199 3570 0.986 - - - - - - 0.986 - - - WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
53. NABP1 ENSGALG00000025884 4195 0.986 - - - - - - - 0.986 - - nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]
54. CORO1C ENSGALG00000004901 7055 0.986 - - - - - - 0.986 - - - coronin 1C [Source:NCBI gene;Acc:416893]
55. USP9X ENSGALG00000016236 9419 0.986 - - - - - - - 0.986 - - ubiquitin specific peptidase 9, X-linked, transcript variant X3
56. EIF1B ENSGALG00000038646 9508 0.986 - - - - - - 0.986 - - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
57. DCAF7 ENSGALG00000000510 8681 0.985 - - - - - - - 0.985 - - DDB1 and CUL4 associated factor 7 [Source:NCBI gene;Acc:771554]
58. ZEB1 ENSGALG00000007260 9277 0.985 - - - - - - 0.985 - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
59. SMARCE1 ENSGALG00000003882 49063 0.984 - - - - - - 0.984 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:420047]
60. TRNT1 ENSGALG00000017368 11932 0.984 - - - - - - - 0.984 - - tRNA nucleotidyl transferase 1 [Source:HGNC Symbol;Acc:HGNC:17341]
61. CXCL12 ENSGALG00000041346 4128 0.984 - - - - - - 0.984 - - - C-X-C motif chemokine ligand 12 [Source:NCBI gene;Acc:395180]
62. TMEM18 ENSGALG00000028744 11779 0.984 - - - - - - 0.984 - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
63. LRPAP1 ENSGALG00000015612 3526 0.983 - - - - - - 0.983 - - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
64. RNF141 ENSGALG00000029586 4962 0.983 - - - - - - 0.983 - - - ring finger protein 141 [Source:NCBI gene;Acc:423039]
65. VSX1 ENSGALG00000037576 1517 0.983 - - - - - - 0.983 - - - visual system homeobox 1 [Source:NCBI gene;Acc:395537]
66. EIF3D ENSGALG00000012529 40887 0.983 - - - - - - 0.983 - - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
67. MCM6 ENSGALG00000012348 12523 0.983 - - - - - - 0.983 - - - minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
68. GALNT1 ENSGALG00000013135 13583 0.982 - - - - - - - 0.982 - - polypeptide N-acetylgalactosaminyltransferase 1 [Source:NCBI gene;Acc:420955]
69. EFTUD2 ENSGALG00000000988 17913 0.982 - - - - - - 0.982 - - - elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
70. LONP1 ENSGALG00000040492 7133 0.982 - - - - - - - 0.982 - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
71. SYNE2 ENSGALG00000011811 5542 0.981 - - - - - - - 0.981 - - spectrin repeat containing nuclear envelope protein 2 [Source:HGNC Symbol;Acc:HGNC:17084]
72. PYURF ENSGALG00000039869 5657 0.98 - - - - - - - 0.980 - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
73. C15H12ORF49 C15H12ORF49 13250 0.98 - - - - - - 0.980 - - -
74. UBQLN1 ENSGALG00000012585 5158 0.98 - - - - - - - 0.980 - - ubiquilin 1 [Source:HGNC Symbol;Acc:HGNC:12508]
75. HNRNPH3 ENSGALG00000003947 28724 0.979 - - - - - - 0.979 - - - heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
76. PI4KA ENSGALG00000040756 3973 0.979 - - - - - - - 0.979 - - phosphatidylinositol 4-kinase alpha [Source:HGNC Symbol;Acc:HGNC:8983]
77. ABL ABL 9532 0.979 - - - - - - - 0.979 - -
78. MFN1 ENSGALG00000041873 4170 0.978 - - - - - - - 0.978 - - mitofusin 1 [Source:NCBI gene;Acc:424973]
79. ST5 6869 0.978 - - - - - - - 0.978 - - suppression of tumorigenicity 5, transcript variant X1
80. ZNF644 ENSGALG00000034253 28348 0.977 - - - - - - 0.977 - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
81. HAPLN1 ENSGALG00000015627 14942 0.977 - - - - - - - 0.977 - - hyaluronan and proteoglycan link protein 1 [Source:NCBI gene;Acc:396475]
82. PPIG ENSGALG00000009839 24114 0.976 - - - - - - 0.976 - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
83. PDZD11 ENSGALG00000004198 11484 0.976 - - - - - - - 0.976 - - PDZ domain containing 11 [Source:NCBI gene;Acc:422153]
84. SNAI1 ENSGALG00000008018 3930 0.976 - - - - - - - 0.976 - - snail family transcriptional repressor 1 [Source:NCBI gene;Acc:396047]
85. NDUFAF2 ENSGALG00000027564 7302 0.976 - - - - - - - 0.976 - - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:NCBI gene;Acc:769549]
86. TP53INP1 ENSGALG00000041353 6890 0.975 - - - - - - - 0.975 - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
87. RRAGD ENSGALG00000026971 2429 0.975 - - - - - - - 0.975 - - Ras related GTP binding D [Source:HGNC Symbol;Acc:HGNC:19903]
88. C3H6ORF120 C3H6ORF120 2712 0.975 - - - - - - - 0.975 - -
89. HIC2 ENSGALG00000033416 4051 0.974 - - - - - - - 0.974 - - hypermethylated in cancer 2 [Source:NCBI gene;Acc:416768]
90. DARS ENSGALG00000012355 2887 0.974 - - - - - - - 0.974 - - aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
91. COMMD7 ENSGALG00000006630 11491 0.973 - - - - - - - 0.973 - - COMM domain containing 7 [Source:NCBI gene;Acc:419286]
92. INTS4 ENSGALG00000000091 5965 0.973 - - - - - - 0.973 - - - integrator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:25048]
93. RP2 ENSGALG00000016728 3291 0.973 - - - - - - - 0.973 - - RP2, ARL3 GTPase activating protein [Source:NCBI gene;Acc:418675]
94. ACTR10 ENSGALG00000012041 2752 0.973 - - - - - - - 0.973 - - actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
95. WDR47 ENSGALG00000002129 2624 0.972 - - - - - - - 0.972 - - WD repeat domain 47 [Source:HGNC Symbol;Acc:HGNC:29141]
96. RGMA ENSGALG00000039173 12874 0.972 - - - - - - - 0.972 - - repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
97. CUTC ENSGALG00000037283 2530 0.972 - - - - - - - 0.972 - - cutC copper transporter [Source:NCBI gene;Acc:423829]
98. CDC123 ENSGALG00000014038 1418 0.972 - - - - - - - 0.972 - - cell division cycle 123 [Source:HGNC Symbol;Acc:HGNC:16827]
99. HNRNPM ENSGALG00000000377 40684 0.971 - - - - - - 0.971 - - - heterogeneous nuclear ribonucleoprotein M [Source:NCBI gene;Acc:420054]
100. ENSGALG00000004643 ENSGALG00000004643 2297 0.971 - - - - - - - 0.971 - -

There are 657 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA