Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for DDX55

Gene Name Gene ID Reads Annotation
DDX55 ENSGALG00000003298 2315 DEAD-box helicase 55 [Source:NCBI gene;Acc:416820]











Genes with expression patterns similar to DDX55

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. DDX55 ENSGALG00000003298 2315 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD-box helicase 55 [Source:NCBI gene;Acc:416820]
2. SKP2 ENSGALG00000003547 14637 1.89 - - - - 0.952 - - 0.938 - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
3. NUDC ENSGALG00000000895 17844 1.812 - - - - 0.823 - - 0.989 - - nuclear distribution C, dynein complex regulator [Source:NCBI gene;Acc:419578]
4. COPS4 ENSGALG00000011130 21515 1.67 - - - - 0.910 - - 0.760 - - COP9 signalosome subunit 4 [Source:NCBI gene;Acc:422594]
5. MRPL17 ENSGALG00000002605 46508 1.527 - - - - 0.719 - - 0.808 - - mitochondrial ribosomal protein L17 [Source:HGNC Symbol;Acc:HGNC:14053]
6. TP53I3 ENSGALG00000016502 178 1.459 - - - - - - 0.728 - - 0.731 tumor protein p53 inducible protein 3 [Source:HGNC Symbol;Acc:HGNC:19373]
7. ENGASE ENSGALG00000011816 1763 1 - - - - - - - 1.000 - - endo-beta-N-acetylglucosaminidase [Source:HGNC Symbol;Acc:HGNC:24622]
8. GOLGA2 ENSGALG00000004881 677 1 - - - - - - - 1.000 - - golgin A2, transcript variant X7
9. EXTL3 ENSGALG00000016630 1916 1 - - - - - - - 1.000 - - exostosin like glycosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:3518]
10. Sep-11 Sep-11 2005 1 - - - - - - - 1.000 - -
11. RPTOR ENSGALG00000034210 982 1 - - - - - - - 1.000 - - regulatory associated protein of MTOR complex 1 [Source:HGNC Symbol;Acc:HGNC:30287]
12. ADAM9 ENSGALG00000003398 1299 1 - - - - - - - 1.000 - - ADAM metallopeptidase domain 9 [Source:NCBI gene;Acc:426781]
13. LSM1 ENSGALG00000003245 4701 0.999 - - - - - - - 0.999 - - LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]
14. MBTPS1 ENSGALG00000003293 4843 0.999 - - - - - - - 0.999 - - membrane bound transcription factor peptidase, site 1 [Source:HGNC Symbol;Acc:HGNC:15456]
15. DISP1 3281 0.999 - - - - - - - 0.999 - - dispatched RND transporter family member 1, transcript variant X3
16. ORC2 ENSGALG00000008234 3361 0.999 - - - - - - - 0.999 - - origin recognition complex subunit 2 [Source:NCBI gene;Acc:424077]
17. PRMT7 ENSGALG00000038865 2666 0.999 - - - - - - - 0.999 - - protein arginine methyltransferase 7 [Source:NCBI gene;Acc:415620]
18. GPR89 GPR89 2253 0.999 - - - - - - - 0.999 - -
19. MTMR6 ENSGALG00000017112 2214 0.999 - - - - - - - 0.999 - - myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
20. IGF1R ENSGALG00000040651 772 0.999 - - - - 0.999 - - - - - insulin like growth factor 1 receptor [Source:NCBI gene;Acc:395889]
21. SAFB ENSGALG00000013365 3175 0.999 - - - - - - - 0.999 - - scaffold attachment factor B, transcript variant X1
22. LARP1B ENSGALG00000010207 2935 0.999 - - - - - - - 0.999 - - La ribonucleoprotein domain family member 1B [Source:HGNC Symbol;Acc:HGNC:24704]
23. EAPP ENSGALG00000010007 5080 0.999 - - - - 0.999 - - - - - E2F associated phosphoprotein [Source:NCBI gene;Acc:423319]
24. XPO7 ENSGALG00000001838 1875 0.998 - - - - 0.998 - - - - - exportin 7 [Source:NCBI gene;Acc:426925]
25. DNAJC12 ENSGALG00000002769 1418 0.998 - - - - 0.998 - - - - - DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
26. ELL2 ENSGALG00000014678 1111 0.998 - - - - 0.998 - - - - - elongation factor for RNA polymerase II 2 [Source:HGNC Symbol;Acc:HGNC:17064]
27. CTSZ ENSGALG00000007462 630 0.998 - - - - 0.998 - - - - - cathepsin Z [Source:HGNC Symbol;Acc:HGNC:2547]
28. ENSGALG00000011687 ENSGALG00000011687 4553 0.998 - - - - 0.998 - - - - -
29. NOP14 ENSGALG00000015649 7039 0.998 - - - - - - - 0.998 - - NOP14 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:16821]
30. SSPN ENSGALG00000014042 638 0.998 - - - - 0.998 - - - - - sarcospan [Source:HGNC Symbol;Acc:HGNC:11322]
31. TBC1D12 ENSGALG00000034044 5588 0.998 - - - - - - - 0.998 - - TBC1 domain family member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
32. REST 2394 0.998 - - - - 0.998 - - - - - RE1 silencing transcription factor
33. JMJD1C ENSGALG00000002942 4556 0.997 - - - - - - - 0.997 - - jumonji domain containing 1C [Source:NCBI gene;Acc:423655]
34. CASC4 ENSGALG00000008208 8338 0.997 - - - - - - - 0.997 - - cancer susceptibility 4 [Source:NCBI gene;Acc:415575]
35. ZBTB10 ENSGALG00000034376 3271 0.997 - - - - 0.997 - - - - - zinc finger and BTB domain containing 10 [Source:HGNC Symbol;Acc:HGNC:30953]
36. BAG2 ENSGALG00000026605 3898 0.997 - - - - - - - 0.997 - - BCL2 associated athanogene 2
37. PSMG1 ENSGALG00000016062 7511 0.997 - - - - - - - 0.997 - - proteasome assembly chaperone 1 [Source:NCBI gene;Acc:418520]
38. FBXO5 ENSGALG00000013607 6156 0.997 - - - - - - - 0.997 - - F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
39. PSMD5 ENSGALG00000001637 6812 0.996 - - - - - - - 0.996 - - proteasome 26S subunit, non-ATPase 5 [Source:NCBI gene;Acc:417125]
40. HIGD2A ENSGALG00000003348 34109 0.996 - - - - - - - 0.996 - - HIG1 hypoxia inducible domain family member 2A
41. KNOP1 ENSGALG00000002042 6251 0.995 - - - - 0.995 - - - - - lysine-rich nucleolar protein 1, transcript variant X1
42. CBWD1 ENSGALG00000010147 2765 0.995 - - - - 0.995 - - - - - COBW domain containing 1 [Source:NCBI gene;Acc:427347]
43. BAG4 ENSGALG00000003254 5751 0.995 - - - - 0.995 - - - - - BCL2 associated athanogene 4 [Source:HGNC Symbol;Acc:HGNC:940]
44. TCP11L1 ENSGALG00000011688 2427 0.995 - - - - 0.995 - - - - - t-complex 11 like 1 [Source:NCBI gene;Acc:421594]
45. TRAPPC12 ENSGALG00000016387 2593 0.995 - - - - 0.995 - - - - - trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]
46. TNRC18 ENSGALG00000040770 4061 0.995 - - - - - - - 0.995 - - trinucleotide repeat containing 18 [Source:HGNC Symbol;Acc:HGNC:11962]
47. CTPS1 ENSGALG00000042967 9532 0.994 - - - - - - - 0.994 - - CTP synthase 1 [Source:HGNC Symbol;Acc:HGNC:2519]
48. MRPS27 ENSGALG00000015002 6541 0.994 - - - - 0.994 - - - - - mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:14512]
49. ATG5 ENSGALG00000015387 7752 0.994 - - - - 0.994 - - - - - autophagy related 5 [Source:NCBI gene;Acc:421784]
50. TLCD1 ENSGALG00000003973 17569 0.994 - - - - 0.994 - - - - - TLC domain containing 1 [Source:NCBI gene;Acc:417575]
51. COIL ENSGALG00000003158 7806 0.994 - - - - 0.994 - - - - - coilin [Source:HGNC Symbol;Acc:HGNC:2184]
52. NAP1L1 ENSGALG00000010238 14506 0.993 - - - - 0.993 - - - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
53. CZH9ORF41 CZH9ORF41 3492 0.993 - - - - 0.993 - - - - -
54. WDR82 ENSGALG00000025904 4783 0.993 - - - - 0.993 - - - - - WD repeat domain 82 [Source:NCBI gene;Acc:415942]
55. COMMD8 ENSGALG00000026279 13509 0.992 - - - - 0.992 - - - - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
56. YY1 ENSGALG00000017388 1933 0.992 - - - - 0.992 - - - - - YY1 transcription factor [Source:NCBI gene;Acc:423455]
57. CCNYL1 ENSGALG00000008485 11958 0.992 - - - - - - - 0.992 - - cyclin Y like 1
58. SSR2 ENSGALG00000000764 32190 0.992 - - - - 0.992 - - - - - signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
59. RABEP1 ENSGALG00000001737 2650 0.991 - - - - 0.991 - - - - - rabaptin, RAB GTPase binding effector protein 1 [Source:NCBI gene;Acc:395930]
60. ESF1 ENSGALG00000034768 8610 0.991 - - - - - - - 0.991 - - ESF1 nucleolar pre-rRNA processing protein homolog [Source:NCBI gene;Acc:428551]
61. KDM2B ENSGALG00000004225 11513 0.991 - - - - - - - 0.991 - - lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
62. IGBP1 ENSGALG00000044628 9200 0.99 - - - - 0.990 - - - - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
63. FH ENSGALG00000013165 13669 0.99 - - - - 0.990 - - - - - fumarate hydratase [Source:NCBI gene;Acc:420969]
64. CSNK1G1 ENSGALG00000030812 31618 0.99 - - - - 0.990 - - - - - casein kinase 1 gamma 1 [Source:NCBI gene;Acc:415328]
65. SIRT1 ENSGALG00000002761 9028 0.99 - - - - 0.990 - - - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
66. FERMT2 ENSGALG00000012425 5480 0.989 - - - - 0.989 - - - - - fermitin family member 2 [Source:HGNC Symbol;Acc:HGNC:15767]
67. LATS2 4776 0.989 - - - - 0.989 - - - - - large tumor suppressor kinase 2
68. STK3 ENSGALG00000032850 6339 0.988 - - - - 0.988 - - - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
69. POLR3F ENSGALG00000008749 5645 0.988 - - - - 0.988 - - - - - RNA polymerase III subunit F [Source:NCBI gene;Acc:416723]
70. MKI67 ENSGALG00000025996 28136 0.988 - - - - 0.988 - - - - - marker of proliferation Ki-67, transcript variant X3
71. NFASC ENSGALG00000031776 4264 0.988 - - - - 0.988 - - - - - neurofascin [Source:NCBI gene;Acc:419824]
72. POLR2B ENSGALG00000011387 4864 0.987 - - - - 0.987 - - - - - RNA polymerase II subunit B [Source:NCBI gene;Acc:422621]
73. TMEM165 ENSGALG00000027886 5468 0.986 - - - - 0.986 - - - - - transmembrane protein 165 [Source:HGNC Symbol;Acc:HGNC:30760]
74. TLK2 ENSGALG00000000410 4690 0.986 - - - - 0.986 - - - - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
75. SHROOM2 ENSGALG00000030802 4517 0.986 - - - - 0.986 - - - - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
76. PARP16 ENSGALG00000007365 9467 0.985 - - - - - - - 0.985 - - poly(ADP-ribose) polymerase family member 16 [Source:HGNC Symbol;Acc:HGNC:26040]
77. MRPL23 ENSGALG00000006561 13737 0.984 - - - - 0.984 - - - - - mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:374255]
78. MRPS25 ENSGALG00000008506 12131 0.984 - - - - 0.984 - - - - - mitochondrial ribosomal protein S25 [Source:NCBI gene;Acc:416129]
79. ACO1 ENSGALG00000002162 6645 0.984 - - - - - - - 0.984 - - aconitase 1, soluble [Source:NCBI gene;Acc:373916]
80. AATF ENSGALG00000005420 6501 0.983 - - - - 0.983 - - - - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
81. CDC42SE2 ENSGALG00000027258 4725 0.983 - - - - 0.983 - - - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
82. FBXO9 ENSGALG00000016320 9600 0.983 - - - - 0.983 - - - - - F-box protein 9 [Source:NCBI gene;Acc:421895]
83. DAK DAK 13208 0.982 - - - - - - - 0.982 - -
84. SH2D3C ENSGALG00000005036 5101 0.982 - - - - 0.982 - - - - - SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
85. PLAA ENSGALG00000001782 5459 0.982 - - - - 0.982 - - - - - phospholipase A2 activating protein [Source:HGNC Symbol;Acc:HGNC:9043]
86. REEP5 ENSGALG00000023157 6282 0.981 - - - - 0.981 - - - - - receptor accessory protein 5 [Source:NCBI gene;Acc:770021]
87. TK2 ENSGALG00000034216 5394 0.98 - - - - 0.980 - - - - - thymidine kinase 2, mitochondrial [Source:NCBI gene;Acc:427551]
88. PUM1 ENSGALG00000042598 9392 0.979 - - - - 0.979 - - - - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
89. SAR1B ENSGALG00000038753 6493 0.978 - - - - 0.978 - - - - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
90. PSPC1 ENSGALG00000017142 13036 0.975 - - - - 0.975 - - - - - paraspeckle component 1 [Source:NCBI gene;Acc:418955]
91. STRAP ENSGALG00000013092 13100 0.975 - - - - 0.975 - - - - - serine/threonine kinase receptor associated protein [Source:NCBI gene;Acc:418175]
92. ENSGALG00000014852 ENSGALG00000014852 15288 0.974 - - - - 0.974 - - - - -
93. DRAXIN ENSGALG00000004631 3122 0.973 - - - - 0.973 - - - - - dorsal inhibitory axon guidance protein [Source:NCBI gene;Acc:419492]
94. MCM5 ENSGALG00000012546 18254 0.973 - - - - - - - 0.973 - - minichromosome maintenance complex component 5 [Source:NCBI gene;Acc:418058]
95. GPN3 ENSGALG00000003807 6320 0.971 - - - - 0.971 - - - - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
96. IGDCC4 ENSGALG00000007410 5457 0.969 - - - - 0.969 - - - - - immunoglobulin superfamily DCC subclass member 4 [Source:HGNC Symbol;Acc:HGNC:13770]
97. RCAN3 ENSGALG00000004282 7778 0.968 - - - - 0.968 - - - - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
98. PCBP4 ENSGALG00000027695 7937 0.968 - - - - 0.968 - - - - - poly(rC) binding protein 4 [Source:HGNC Symbol;Acc:HGNC:8652]
99. SFSWAP ENSGALG00000002487 9977 0.967 - - - - 0.967 - - - - - splicing factor SWAP [Source:HGNC Symbol;Acc:HGNC:10790]
100. NOP58 ENSGALG00000008454 34630 0.966 - - - - 0.966 - - - - - NOP58 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:29926]

There are 330 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA