Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for DDX1

Gene Name Gene ID Reads Annotation
DDX1 ENSGALG00000016461 15157 DEAD-box helicase 1 [Source:NCBI gene;Acc:395249]











Genes with expression patterns similar to DDX1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. DDX1 ENSGALG00000016461 15157 9 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 1.000 1.000 DEAD-box helicase 1 [Source:NCBI gene;Acc:395249]
2. CKAP2 ENSGALG00000017025 25020 1.912 - - - - - - 0.998 - - 0.914 cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
3. HSD17B12 ENSGALG00000036787 11748 1.861 - - - - - - 0.998 - - 0.863 hydroxysteroid 17-beta dehydrogenase 12 [Source:HGNC Symbol;Acc:HGNC:18646]
4. RALBP1 ENSGALG00000008405 13780 1.808 - - - - - - 0.999 - - 0.809 ralA binding protein 1 [Source:NCBI gene;Acc:429466]
5. BZW2 ENSGALG00000010809 29213 1.787 - - - - - - 0.988 - - 0.799 basic leucine zipper and W2 domains 2 [Source:NCBI gene;Acc:420594]
6. DDOST ENSGALG00000010073 18707 1.718 - - - - - - 0.998 - - 0.720 dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [Source:NCBI gene;Acc:425542]
7. PNRC2 ENSGALG00000004122 19228 1.605 - - - - - - - 0.769 - 0.836 proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]
8. HSD17B4 ENSGALG00000002187 9581 1.592 - - - - - - 0.732 - - 0.860 hydroxysteroid 17-beta dehydrogenase 4 [Source:NCBI gene;Acc:395785]
9. UFD1L 12964 1.516 - - - - - - - 0.700 - 0.816 ubiquitin fusion degradation 1 like (yeast)
10. PTP4A2 ENSGALG00000003265 24826 1.482 - - - - 0.711 - - - - 0.771 protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
11. C1D ENSGALG00000008765 14779 0.999 - - - - - - 0.999 - - - C1D nuclear receptor corepressor [Source:NCBI gene;Acc:421267]
12. PLOD2 ENSGALG00000006783 22789 0.998 - - - - - - 0.998 - - - procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:9082]
13. SLBP ENSGALG00000015712 5586 0.998 - - - - - - 0.998 - - - stem-loop binding protein [Source:NCBI gene;Acc:422902]
14. RBM45 ENSGALG00000009202 6057 0.998 - - - - - - 0.998 - - - RNA binding motif protein 45 [Source:NCBI gene;Acc:424132]
15. CHKA ENSGALG00000036754 5077 0.998 - - - - - - 0.998 - - - choline kinase alpha [Source:HGNC Symbol;Acc:HGNC:1937]
16. UTP15 ENSGALG00000013510 13122 0.998 - - - - - - 0.998 - - - UTP15, small subunit processome component [Source:NCBI gene;Acc:426152]
17. DEPDC1B ENSGALG00000014729 5334 0.998 - - - - - - 0.998 - - - DEP domain containing 1B [Source:NCBI gene;Acc:427152]
18. RBM18 ENSGALG00000028167 10372 0.998 - - - - - - 0.998 - - - RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
19. GATAD2A ENSGALG00000042900 6337 0.997 - - - - - - 0.997 - - - GATA zinc finger domain containing 2A [Source:NCBI gene;Acc:420109]
20. UGCG ENSGALG00000015682 2735 0.997 - - - - - - 0.997 - - - UDP-glucose ceramide glucosyltransferase [Source:HGNC Symbol;Acc:HGNC:12524]
21. TOPBP1 ENSGALG00000034461 3094 0.997 - - - - - - 0.997 - - - DNA topoisomerase II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]
22. THOC5 ENSGALG00000029223 16069 0.997 - - - - - - 0.997 - - - THO complex 5 [Source:NCBI gene;Acc:417019]
23. IRF6 ENSGALG00000001405 3144 0.997 - - - - - - 0.997 - - - interferon regulatory factor 6 [Source:HGNC Symbol;Acc:HGNC:6121]
24. IGDCC3 ENSGALG00000007371 2434 0.997 - - - - - - 0.997 - - - immunoglobulin superfamily DCC subclass member 3 [Source:HGNC Symbol;Acc:HGNC:9700]
25. SMPD3 ENSGALG00000034950 4335 0.997 - - - - - - 0.997 - - - sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]
26. C28H19ORF10 C28H19ORF10 16529 0.997 - - - - - - 0.997 - - -
27. GALT ENSGALG00000026195 2002 0.996 - - - - - - 0.996 - - - galactose-1-phosphate uridylyltransferase [Source:HGNC Symbol;Acc:HGNC:4135]
28. APP ENSGALG00000015770 9438 0.996 - - - - - - 0.996 - - - amyloid beta (A4) precursor protein [Source:NCBI gene;Acc:374198]
29. YWHAE ENSGALG00000002661 37143 0.994 - - - - - - 0.994 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon [Source:NCBI gene;Acc:417554]
30. LSM7 ENSGALG00000000408 19112 0.992 - - - - - - 0.992 - - - LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420055]
31. HECTD3 ENSGALG00000010217 2513 0.99 - - - - - - 0.990 - - - HECT domain E3 ubiquitin protein ligase 3, transcript variant X2
32. NDUFA10 ENSGALG00000004302 41948 0.976 - - - - - - 0.976 - - - NADH:ubiquinone oxidoreductase subunit A10 [Source:NCBI gene;Acc:424032]
33. NUDCD2 ENSGALG00000001726 6303 0.976 - - - - - - 0.976 - - - NudC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30535]
34. POLB ENSGALG00000040828 7462 0.968 - - - - - - - 0.968 - - DNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]
35. ASNS ENSGALG00000009748 11822 0.965 - - - - - - 0.965 - - - asparagine synthetase (glutamine-hydrolyzing) [Source:NCBI gene;Acc:420574]
36. BRE 10440 0.954 - - - - - - - 0.954 - - brain and reproductive organ-expressed (TNFRSF1A modulator), transcript variant X2
37. RNF7 ENSGALG00000021117 13110 0.949 - - - - - - 0.949 - - - ring finger protein 7 [Source:NCBI gene;Acc:424781]
38. SUGT1 ENSGALG00000016946 22881 0.941 - - - - - - 0.941 - - - SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:NCBI gene;Acc:418827]
39. GORASP1 ENSGALG00000006033 4033 0.94 - - - - - - - - - 0.940 golgi reassembly stacking protein 1 [Source:NCBI gene;Acc:420426]
40. WRNIP1 ENSGALG00000012856 1954 0.938 - - - - - - - - - 0.938 Werner helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
41. CDC20 ENSGALG00000009971 11197 0.935 - - - - - - - 0.935 - - cell division cycle 20 [Source:NCBI gene;Acc:424563]
42. ISL1 ENSGALG00000014884 7666 0.933 - - - - - - - 0.933 - - ISL LIM homeobox 1 [Source:NCBI gene;Acc:396383]
43. VWA9 ENSGALG00000007491 4790 0.933 - - - - - - - - - 0.933 von Willebrand factor A domain containing 9 [Source:NCBI gene;Acc:415540]
44. LOC770492 ENSGALG00000027778 695 0.932 - - - - - - - - - 0.932 ras-related and estrogen-regulated growth inhibitor-like
45. SUV39H2 ENSGALG00000013920 4360 0.932 - - - - - - - - - 0.932 suppressor of variegation 3-9 homolog 2 [Source:NCBI gene;Acc:426314]
46. RHOT1 ENSGALG00000003397 5149 0.931 - - - - - - - - - 0.931 ras homolog family member T1 [Source:NCBI gene;Acc:417410]
47. KLHL7 ENSGALG00000010938 528 0.931 - - - - - - - - - 0.931 kelch like family member 7 [Source:NCBI gene;Acc:420612]
48. PTX3 ENSGALG00000028284 2984 0.929 - - - - - - - - - 0.929 pentraxin 3 [Source:NCBI gene;Acc:548626]
49. C1orf198 ENSGALG00000026600 5651 0.928 - - - - - - - - - 0.928 chromosome 1 open reading frame 198 [Source:HGNC Symbol;Acc:HGNC:25900]
50. MGA 1911 0.927 - - - - - - - - - 0.927 MGA, MAX dimerization protein, transcript variant X15
51. SLC39A6 ENSGALG00000013209 1754 0.927 - - - - - - - - - 0.927 solute carrier family 39 member 6 [Source:HGNC Symbol;Acc:HGNC:18607]
52. F2RL2 ENSGALG00000023379 1049 0.926 - - - - - - - - - 0.926 coagulation factor II thrombin receptor like 2 [Source:HGNC Symbol;Acc:HGNC:3539]
53. CDKN2AIP ENSGALG00000010661 1218 0.925 - - - - - - - - - 0.925 CDKN2A interacting protein [Source:HGNC Symbol;Acc:HGNC:24325]
54. SLC35B1 ENSGALG00000035057 10683 0.924 - - - - - - - - - 0.924 solute carrier family 35 member B1 [Source:NCBI gene;Acc:395185]
55. FRMD3 ENSGALG00000012577 999 0.922 - - - - - - - - - 0.922 FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
56. IL10R2 IL10R2 72 0.921 - - - - - - - - - 0.921
57. SOX6 ENSGALG00000006074 102 0.921 - - - - - - - - - 0.921 Gallus gallus SRY-box 6 (SOX6), mRNA. [Source:RefSeq mRNA;Acc:NM_001318451]
58. ZNF6 ZNF6 138 0.921 - - - - - - - - - 0.921
59. SF3B6 ENSGALG00000016501 28236 0.921 - - - - - - 0.921 - - - splicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
60. HAUS8 ENSGALG00000003727 351 0.921 - - - - - - - - - 0.921 HAUS augmin like complex subunit 8 [Source:HGNC Symbol;Acc:HGNC:30532]
61. CASP8AP2 ENSGALG00000015611 5657 0.92 - - - - - - - - - 0.920 caspase 8 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1510]
62. CPNE2 ENSGALG00000001316 236 0.92 - - - - - - - - - 0.920 copine 2 [Source:NCBI gene;Acc:415646]
63. 5S_2 5S_2 58 0.92 - - - - - - - - - 0.920
64. CXADR ENSGALG00000015701 96 0.92 - - - - - - - - - 0.920 coxsackie virus and adenovirus receptor, transcript variant X2
65. CPT2 ENSGALG00000010681 3211 0.919 - - - - - - - - - 0.919 carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
66. TBC1D19 ENSGALG00000029673 1868 0.919 - - - - - - - - - 0.919 TBC1 domain family member 19 [Source:HGNC Symbol;Acc:HGNC:25624]
67. IDH1 ENSGALG00000008818 17613 0.919 - - - - - - 0.919 - - - isocitrate dehydrogenase (NADP(+)) 1, cytosolic [Source:HGNC Symbol;Acc:HGNC:5382]
68. FAM190B FAM190B 165 0.918 - - - - - - - - - 0.918
69. CASKIN1 604 0.918 - - - - - - - - - 0.918 CASK interacting protein 1, transcript variant X4
70. CDH1-A CDH1-A 343 0.918 - - - - - - - - - 0.918
71. CDC42 ENSGALG00000004796 59878 0.918 - - - - - - 0.918 - - - cell division cycle 42 [Source:NCBI gene;Acc:395917]
72. OSBPL1A ENSGALG00000015086 2702 0.918 - - - - - - - - - 0.918 oxysterol binding protein like 1A [Source:HGNC Symbol;Acc:HGNC:16398]
73. PLEKHG1 ENSGALG00000012395 2708 0.917 - - - - - - - - - 0.917 pleckstrin homology and RhoGEF domain containing G1 [Source:HGNC Symbol;Acc:HGNC:20884]
74. CRYM ENSGALG00000002484 3558 0.917 - - - - - - - - - 0.917 crystallin mu [Source:HGNC Symbol;Acc:HGNC:2418]
75. AURKA ENSGALG00000007768 793 0.917 - - - - - - - - - 0.917 aurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]
76. CCT8 ENSGALG00000015821 12161 0.917 - - - - - - - - - 0.917 chaperonin containing TCP1 subunit 8 [Source:NCBI gene;Acc:418486]
77. SSR2 ENSGALG00000000764 32190 0.916 - - - - - - - - - 0.916 signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
78. ARHGAP21 ENSGALG00000007721 3961 0.916 - - - - - - - - - 0.916 Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
79. SSH1 ENSGALG00000004928 222 0.915 - - - - - - - - - 0.915 slingshot protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:30579]
80. GRK4 ENSGALG00000015645 1065 0.915 - - - - - - - - - 0.915 G protein-coupled receptor kinase 4 [Source:NCBI gene;Acc:422879]
81. LPCAT2 ENSGALG00000003574 893 0.915 - - - - - - - - - 0.915 lysophosphatidylcholine acyltransferase 2 [Source:NCBI gene;Acc:415716]
82. ACADL ENSGALG00000002891 8058 0.915 - - - - - - - - - 0.915 acyl-CoA dehydrogenase long chain [Source:NCBI gene;Acc:424005]
83. CETN1 ENSGALG00000026741 7243 0.915 - - - - - - - - - 0.915 centrin 1 [Source:NCBI gene;Acc:422668]
84. ITSN2 ENSGALG00000016504 651 0.915 - - - - - - - - - 0.915 intersectin 2 [Source:HGNC Symbol;Acc:HGNC:6184]
85. PM20D2 ENSGALG00000015779 1301 0.914 - - - - - - - - - 0.914 peptidase M20 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21408]
86. INTS10 ENSGALG00000010130 6320 0.914 - - - - - - - - - 0.914 integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
87. FASTKD3 ENSGALG00000033521 1186 0.914 - - - - - - - - - 0.914 FAST kinase domains 3 [Source:HGNC Symbol;Acc:HGNC:28758]
88. UQCR11 ENSGALG00000001096 25245 0.914 - - - - - - - - - 0.914 ubiquinol-cytochrome c reductase, complex III subunit XI [Source:NCBI gene;Acc:770135]
89. HYAL3 ENSGALG00000029000 712 0.914 - - - - - - - - - 0.914 hyaluronoglucosaminidase 3 [Source:HGNC Symbol;Acc:HGNC:5322]
90. CNTRL ENSGALG00000001513 1773 0.913 - - - - - - - - - 0.913 centriolin [Source:NCBI gene;Acc:417121]
91. SPDL1 ENSGALG00000001942 4403 0.913 - - - - - - - - - 0.913 spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
92. PREX2 ENSGALG00000042354 134 0.913 - - - - - - - - - 0.913 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
93. PPFIA1 ENSGALG00000035774 5258 0.912 - - - - - - - - - 0.912 PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
94. B3GALTL B3GALTL 4128 0.912 - - - - - - - - - 0.912
95. ITGA9 ENSGALG00000029378 415 0.912 - - - - - - - - - 0.912 integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
96. APBA3 ENSGALG00000000740 1249 0.912 - - - - - - - - - 0.912 amyloid beta precursor protein binding family A member 3 [Source:HGNC Symbol;Acc:HGNC:580]
97. FAM129A ENSGALG00000004812 269 0.911 - - - - - - - - - 0.911 family with sequence similarity 129 member A [Source:NCBI gene;Acc:424451]
98. TXNDC12 ENSGALG00000010569 13822 0.911 - - - - - - - - - 0.911 thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
99. MPRIP ENSGALG00000004798 6700 0.911 - - - - - - - - - 0.911 myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
100. SLC2A3 SLC2A3 527 0.911 - - - - - - - - - 0.911

There are 444 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA