Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CUX1_1

Gene Name Gene ID Reads Annotation
CUX1_1 ENSGALG00000021636 3705 cut like homeobox 1 [Source:NCBI gene;Acc:101749861]











Genes with expression patterns similar to CUX1_1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CUX1_1 ENSGALG00000021636 3705 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
2. PTPRK ENSGALG00000037423 3688 1.596 - - - - - - - 0.892 0.704 - protein tyrosine phosphatase, receptor type K [Source:HGNC Symbol;Acc:HGNC:9674]
3. NPR2 ENSGALG00000027630 871 1.521 - - 0.704 - - - - 0.817 - - natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]
4. TYW3 ENSGALG00000032549 4869 1 - - - - - - 1.000 - - - tRNA-yW synthesizing protein 3 homolog [Source:NCBI gene;Acc:424720]
5. ATP2B4 ENSGALG00000003601 3746 1 - - - - - - 1.000 - - - ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
6. ACADSB ENSGALG00000041417 7710 1 - - - - - - 1.000 - - - acyl-CoA dehydrogenase short/branched chain [Source:NCBI gene;Acc:423947]
7. ZFAND1 ENSGALG00000042794 2849 1 - - - - - - 1.000 - - - zinc finger AN1-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25858]
8. CFC1 ENSGALG00000012623 3164 0.999 - - - - - - 0.999 - - - cripto, FRL-1, cryptic family 1 [Source:NCBI gene;Acc:395437]
9. MEIS1 ENSGALG00000041626 3865 0.999 - - - - - - 0.999 - - - Meis homeobox 1 [Source:NCBI gene;Acc:395589]
10. AIFM1 ENSGALG00000004003 10451 0.999 - - - - - - 0.999 - - - apoptosis inducing factor mitochondria associated 1 [Source:NCBI gene;Acc:428688]
11. N6AMT2 N6AMT2 4703 0.999 - - - - - - 0.999 - - -
12. NUBP2 ENSGALG00000002316 3643 0.999 - - - - - - 0.999 - - - nucleotide binding protein 2 [Source:NCBI gene;Acc:416402]
13. RTF1 ENSGALG00000008595 31933 0.998 - - - - - - 0.998 - - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996]
14. DAP ENSGALG00000013002 6815 0.998 - - - - - - 0.998 - - - death associated protein [Source:NCBI gene;Acc:420923]
15. STAM ENSGALG00000035287 7649 0.998 - - - - - - 0.998 - - - signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
16. SEC11C ENSGALG00000031663 4266 0.998 - - - - - - 0.998 - - - SEC11 homolog C, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:23400]
17. PLEKHH2 ENSGALG00000009947 6384 0.998 - - - - - - 0.998 - - - pleckstrin homology, MyTH4 and FERM domain containing H2 [Source:HGNC Symbol;Acc:HGNC:30506]
18. KDM2B ENSGALG00000004225 11513 0.997 - - - - - - 0.997 - - - lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
19. MYLK ENSGALG00000011708 10434 0.997 - - - - - - 0.997 - - - Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
20. COPS5 ENSGALG00000030843 11942 0.996 - - - - - - 0.996 - - - COP9 signalosome subunit 5 [Source:NCBI gene;Acc:426579]
21. PRKCI ENSGALG00000009364 11574 0.995 - - - - - - 0.995 - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
22. KIAA1143 ENSGALG00000035952 6735 0.992 - - - - - - 0.992 - - - KIAA1143 [Source:NCBI gene;Acc:420709]
23. TTR ENSGALG00000015143 9764 0.99 - - - - - - 0.990 - - - transthyretin [Source:NCBI gene;Acc:396277]
24. MPHOSPH6 ENSGALG00000031983 17073 0.99 - - - - - - 0.990 - - - M-phase phosphoprotein 6 [Source:NCBI gene;Acc:415811]
25. EIF3H ENSGALG00000040522 39919 0.99 - - - - - - 0.990 - - - eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
26. MYH10 ENSGALG00000001183 26889 0.989 - - - - - - 0.989 - - - myosin, heavy chain 10, non-muscle [Source:NCBI gene;Acc:396465]
27. S100A11 ENSGALG00000036711 23454 0.981 - - - - - - 0.981 - - - S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
28. HP1BP3 ENSGALG00000010079 33723 0.969 - - - - - - 0.969 - - - heterochromatin protein 1 binding protein 3 [Source:NCBI gene;Acc:425543]
29. YWHAH ENSGALG00000006743 29828 0.969 - - - - - - 0.969 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [Source:NCBI gene;Acc:416955]
30. RPL23A ENSGALG00000003966 369097 0.967 - - - - - - 0.967 - - - ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. CCNB2 ENSGALG00000004161 50324 0.967 - - - - - - 0.967 - - - cyclin B2 [Source:NCBI gene;Acc:415400]
32. EEF2 ENSGALG00000033884 62036 0.958 - - - - - - 0.958 - - - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
33. RPL30 ENSGALG00000029897 58241 0.955 - - - - - - 0.955 - - - ribosomal protein L30 [Source:NCBI gene;Acc:425416]
34. NDUFA5 ENSGALG00000008821 22926 0.94 - - - - - - 0.940 - - - NADH:ubiquinone oxidoreductase subunit A5 [Source:NCBI gene;Acc:417753]
35. PHB2 ENSGALG00000014567 104774 0.932 - - - - - - 0.932 - - - prohibitin 2 [Source:NCBI gene;Acc:771124]
36. NCAPH ENSGALG00000032270 2103 0.914 - - - - - - - 0.914 - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]
37. LIMS1 ENSGALG00000029970 7244 0.908 - - - - - - - 0.908 - - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
38. CHCHD2 ENSGALG00000002495 99536 0.907 - - - - - - 0.907 - - - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
39. UBB ENSGALG00000004509 139598 0.904 - - - - - - 0.904 - - - Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
40. IBTK ENSGALG00000015864 3154 0.901 - - - - - - - 0.901 - - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
41. RGP1 ENSGALG00000002394 5937 0.899 - - - - - - 0.899 - - - RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
42. TAF5 ENSGALG00000008241 5227 0.898 - - - - - - - 0.898 - - TATA-box binding protein associated factor 5 [Source:NCBI gene;Acc:423872]
43. AIP ENSGALG00000040247 4166 0.895 - - - - - - - 0.895 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
44. ITFG2 ENSGALG00000014335 1896 0.892 - - - - - - - 0.892 - - integrin alpha FG-GAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:30879]
45. RCAN3 ENSGALG00000004282 7778 0.891 - - - - - - - 0.891 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
46. RBX1 ENSGALG00000011993 26090 0.891 - - - - - - 0.891 - - - ring-box 1 [Source:NCBI gene;Acc:418001]
47. MTIF2 ENSGALG00000031265 2366 0.89 - - - - - - - 0.890 - - mitochondrial translational initiation factor 2 [Source:NCBI gene;Acc:421213]
48. MAPK6 ENSGALG00000031448 28384 0.886 - - - - - - 0.886 - - - mitogen-activated protein kinase 6 [Source:NCBI gene;Acc:415419]
49. HNRNPAB ENSGALG00000014381 41009 0.885 - - - - - - 0.885 - - - heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
50. CREPT CREPT 17142 0.884 - - - - - - - 0.884 - -
51. TAF1A ENSGALG00000009441 2431 0.883 - - - - - - - 0.883 - - TATA-box binding protein associated factor, RNA polymerase I subunit A [Source:NCBI gene;Acc:421338]
52. BRCA1 ENSGALG00000002781 2052 0.88 - - - - - - - 0.880 - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
53. UPF1 ENSGALG00000003220 9496 0.878 - - - - - - - 0.878 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
54. FGFR1 ENSGALG00000039786 4480 0.878 - - - - - - - 0.878 - - fibroblast growth factor receptor 1 [Source:NCBI gene;Acc:396516]
55. NPAT ENSGALG00000017162 1574 0.878 - - - - - - - 0.878 - - nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896]
56. PTPN4 3030 0.877 - - - - - - - 0.877 - - protein tyrosine phosphatase, non-receptor type 4, transcript variant X2
57. SMG8 ENSGALG00000005093 5557 0.876 - - - - - - - 0.876 - - SMG8 nonsense mediated mRNA decay factor
58. PPP2R3A ENSGALG00000034512 1091 0.874 - - - - - - - 0.874 - - protein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]
59. VPS13D ENSGALG00000034777 2350 0.874 - - - - - - - 0.874 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
60. HAGHL ENSGALG00000021040 1568 0.871 - - - - - - - 0.871 - - hydroxyacylglutathione hydrolase-like [Source:NCBI gene;Acc:416536]
61. SLC19A1 ENSGALG00000030511 1397 0.87 - - - - - - - 0.870 - - solute carrier family 19 member 1 [Source:NCBI gene;Acc:424034]
62. TMEM161A ENSGALG00000025809 2813 0.87 - - - - - - - 0.870 - - transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
63. DOK5 ENSGALG00000007786 1732 0.868 - - - - - - - 0.868 - - docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
64. TXNDC11 ENSGALG00000003154 2224 0.866 - - - - - - - 0.866 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
65. UBN1 ENSGALG00000031416 2848 0.866 - - - - - - - 0.866 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
66. PDZD8 ENSGALG00000029095 1068 0.865 - - - - - - - 0.865 - - PDZ domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26974]
67. SPATA2 ENSGALG00000008026 2040 0.862 - - - - - - - 0.862 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
68. HDAC1 ENSGALG00000003297 3528 0.862 - - - - - - - 0.862 - - histone deacetylase 1 [Source:NCBI gene;Acc:373961]
69. PHF2 ENSGALG00000039208 2003 0.862 - - - - - - - 0.862 - - PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
70. PDLIM5 ENSGALG00000012211 3064 0.861 - - - - - - - 0.861 - - PDZ and LIM domain 5 [Source:NCBI gene;Acc:422699]
71. LRPAP1 ENSGALG00000015612 3526 0.861 - - - - - - - 0.861 - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
72. USP28 ENSGALG00000006969 2645 0.861 - - - - - - - 0.861 - - ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]
73. DOCK10 ENSGALG00000005030 848 0.861 - - - - - - - 0.861 - - dedicator of cytokinesis 10 [Source:HGNC Symbol;Acc:HGNC:23479]
74. EML1 1941 0.86 - - - - - - - 0.860 - - echinoderm microtubule associated protein like 1, transcript variant X11
75. GLT8D1 ENSGALG00000001642 4232 0.859 - - - - - - - 0.859 - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
76. BUD13 ENSGALG00000025882 1800 0.859 - - - - - - - 0.859 - - BUD13 homolog [Source:NCBI gene;Acc:428248]
77. CCDC80 ENSGALG00000015193 1387 0.858 - - - - - - - 0.858 - - coiled-coil domain containing 80 [Source:NCBI gene;Acc:395074]
78. TANK ENSGALG00000011131 3382 0.856 - - - - - - - 0.856 - - TRAF family member associated NFKB activator [Source:NCBI gene;Acc:424190]
79. TICAM1 ENSGALG00000026850 723 0.855 - - - - - - - 0.855 - - toll like receptor adaptor molecule 1 [Source:NCBI gene;Acc:100008585]
80. STOML2 STOML2 15566 0.855 - - - - - - - 0.855 - -
81. ALAS1 3660 0.854 - - - - - - - 0.854 - - 5'-aminolevulinate synthase 1, transcript variant X1
82. AGRN ENSGALG00000039193 8135 0.854 - - - - - - - 0.854 - - agrin [Source:NCBI gene;Acc:396538]
83. KIF21B ENSGALG00000034347 4144 0.854 - - - - - - - 0.854 - - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
84. BACE2 ENSGALG00000034932 1570 0.853 - - - - - - - 0.853 - - beta-secretase 2 [Source:HGNC Symbol;Acc:HGNC:934]
85. LRIG3 ENSGALG00000009755 6655 0.852 - - - - - - - 0.852 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
86. ITFG1 ENSGALG00000004049 2934 0.851 - - - - - - - 0.851 - - integrin alpha FG-GAP repeat containing 1 [Source:NCBI gene;Acc:415742]
87. NT5C3B ENSGALG00000003651 5190 0.851 - - - - - - - 0.851 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
88. GTPBP4 ENSGALG00000006703 16183 0.85 - - - - - - - 0.850 - - GTP binding protein 4 [Source:NCBI gene;Acc:420458]
89. PRPF40A ENSGALG00000012526 7724 0.849 - - - - - - - 0.849 - - pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
90. KIAA1009 KIAA1009 1261 0.849 - - - - - - - 0.849 - -
91. CLMP ENSGALG00000006507 8079 0.848 - - - - - - - 0.848 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
92. FBXL17 ENSGALG00000000276 2443 0.848 - - - - - - - 0.848 - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
93. ISCU ENSGALG00000004869 6852 0.848 - - - - - - - 0.848 - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
94. RNASEH1 ENSGALG00000016389 2694 0.847 - - - - - - - 0.847 - - ribonuclease H1 [Source:NCBI gene;Acc:395848]
95. NDRG3 ENSGALG00000001492 5919 0.845 - - - - - - - 0.845 - - NDRG family member 3 [Source:HGNC Symbol;Acc:HGNC:14462]
96. HOOK1 ENSGALG00000010889 1007 0.845 - - - - - - - 0.845 - - hook microtubule tethering protein 1 [Source:NCBI gene;Acc:424675]
97. TERF1 ENSGALG00000037453 4497 0.844 - - - - - - - 0.844 - - telomeric repeat binding factor 1 [Source:NCBI gene;Acc:378896]
98. FBXO7 ENSGALG00000012569 4124 0.843 - - - - - - - 0.843 - - F-box protein 7 [Source:NCBI gene;Acc:418063]
99. ARNTL2 ENSGALG00000014096 998 0.843 - - - - - - - 0.843 - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:NCBI gene;Acc:373925]
100. SNX12 ENSGALG00000005659 9503 0.843 - - - - - - - 0.843 - - sorting nexin 12 [Source:NCBI gene;Acc:428704]

There are 144 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA