Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CUX1

Gene Name Gene ID Reads Annotation
CUX1 ENSGALG00000021636 2587 cut like homeobox 1 [Source:NCBI gene;Acc:101749861]











Genes with expression patterns similar to CUX1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CUX1 ENSGALG00000021636 2587 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
2. MTIF3 ENSGALG00000017097 2524 1.499 - - - - - - 0.750 0.749 - - mitochondrial translational initiation factor 3 [Source:NCBI gene;Acc:418930]
3. TCEA2 ENSGALG00000005976 9143 0.83 - - - - - - 0.830 - - - transcription elongation factor A2 [Source:HGNC Symbol;Acc:HGNC:11614]
4. AFF2 ENSGALG00000009168 99 0.819 - - - - - - - - - 0.819 AF4/FMR2 family member 2 [Source:HGNC Symbol;Acc:HGNC:3776]
5. HTR7_1 ENSGALG00000040549 86 0.812 - - - - - - - - - 0.812 5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled [Source:NCBI gene;Acc:423794]
6. NSUN3 ENSGALG00000015414 1132 0.799 - - - - - - - - - 0.799 NOP2/Sun RNA methyltransferase family member 3 [Source:HGNC Symbol;Acc:HGNC:26208]
7. UBQLN4 ENSGALG00000042214 15829 0.793 - - - - - - 0.793 - - - ubiquilin 4 [Source:NCBI gene;Acc:426353]
8. PQLC1 ENSGALG00000043150 3133 0.792 - - - - - - - 0.792 - - PQ loop repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:26188]
9. KHDRBS1 ENSGALG00000003272 4249 0.791 - - - - - - 0.791 - - - KH RNA binding domain containing, signal transduction associated 1 [Source:NCBI gene;Acc:374071]
10. CHURC1 ENSGALG00000042309 12066 0.785 - - - - - - 0.785 - - - churchill domain containing 1 [Source:NCBI gene;Acc:395448]
11. ENSGALG00000026941 ENSGALG00000026941 653 0.783 - - - - - - - 0.783 - -
12. PYGL ENSGALG00000012365 4691 0.78 - - - - - - - - - 0.780 glycogen phosphorylase L [Source:NCBI gene;Acc:378909]
13. DBI ENSGALG00000012112 6910 0.778 - - - - - - 0.778 - - - diazepam binding inhibitor, acyl-CoA binding protein [Source:NCBI gene;Acc:395263]
14. NUSAP1 ENSGALG00000008584 9955 0.778 - - - - - - - - - 0.778 nucleolar and spindle associated protein 1 [Source:NCBI gene;Acc:423213]
15. DYNC2H1 ENSGALG00000041814 1770 0.777 - - - - - - - - 0.777 - dynein cytoplasmic 2 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
16. PLEKHM1 ENSGALG00000000201 1300 0.777 - - - - - - - - - 0.777 pleckstrin homology and RUN domain containing M1 [Source:NCBI gene;Acc:419939]
17. HISTH1 ENSGALG00000011747 16825 0.777 - - - - - - - 0.777 - - histone H1
18. ERLEC1 ENSGALG00000008172 3948 0.772 - - - - - - 0.772 - - - endoplasmic reticulum lectin 1 [Source:HGNC Symbol;Acc:HGNC:25222]
19. UBE2R2 ENSGALG00000001668 9234 0.772 - - - - - - 0.772 - - - ubiquitin conjugating enzyme E2 R2 [Source:NCBI gene;Acc:427021]
20. EFTUD1 EFTUD1 3455 0.761 - - - - - - 0.761 - - -
21. CEP68 ENSGALG00000008787 1591 0.761 - - - - - - 0.761 - - - centrosomal protein 68 [Source:HGNC Symbol;Acc:HGNC:29076]
22. ENSGALG00000012564 ENSGALG00000012564 426 0.761 - - - - - - - - - 0.761
23. MACF1 ENSGALG00000003693 1043 0.757 - - - - - - 0.757 - - - microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
24. LIMK2 ENSGALG00000006950 1611 0.756 - - - - - - 0.756 - - - LIM domain kinase 2 [Source:NCBI gene;Acc:396010]
25. SERPINI1 ENSGALG00000009470 3819 0.756 - - - - - - 0.756 - - - serpin family I member 1 [Source:NCBI gene;Acc:425002]
26. MARC1 ENSGALG00000009453 5675 0.755 - - - - - - 0.755 - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
27. ITPR1 ENSGALG00000008294 1226 0.753 - - - - - - 0.753 - - - inositol 1,4,5-trisphosphate receptor type 1 [Source:NCBI gene;Acc:395412]
28. VWA1 ENSGALG00000001527 79 0.753 - - - - - - - - - 0.753 von Willebrand factor A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30910]
29. 7SK_2 7SK_2 1037 0.753 - - - - - - - 0.753 - -
30. RAP1A ENSGALG00000001476 5287 0.752 - - - - - - 0.752 - - - RAP1A, member of RAS oncogene family
31. CHALK5 CHALK5 1351 0.748 - - - - - - - - - 0.748
32. MORN4 ENSGALG00000006149 7772 0.748 - - - - - - 0.748 - - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
33. TRUB1 ENSGALG00000009091 1005 0.742 - - - - - - - - 0.742 - TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
34. N4BP2L2 857 0.742 - - - - - - 0.742 - - - NEDD4 binding protein 2 like 2, transcript variant X7
35. ATP5L ENSGALG00000006899 69561 0.741 - - - - - - 0.741 - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
36. TRIM37 ENSGALG00000005084 4036 0.741 - - - - - - - 0.741 - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
37. GATAD1 ENSGALG00000009399 4067 0.741 - - - - - - 0.741 - - - GATA zinc finger domain containing 1 [Source:NCBI gene;Acc:420551]
38. TMEM196 ENSGALG00000010865 239 0.741 - - - - - - - - - 0.741 transmembrane protein 196 [Source:HGNC Symbol;Acc:HGNC:22431]
39. PPM1K ENSGALG00000011266 111 0.741 - - - - - - - - - 0.741 protein phosphatase, Mg2+/Mn2+ dependent 1K [Source:HGNC Symbol;Acc:HGNC:25415]
40. CYB5A ENSGALG00000013708 8287 0.74 - - - - - - 0.740 - - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
41. ZCCHC9 ENSGALG00000015603 3118 0.74 - - - - - - 0.740 - - - zinc finger CCHC-type containing 9 [Source:HGNC Symbol;Acc:HGNC:25424]
42. FOXK1 ENSGALG00000004460 1483 0.74 - - - - - - 0.740 - - - forkhead box K1 [Source:HGNC Symbol;Acc:HGNC:23480]
43. CCDC102A ENSGALG00000029999 324 0.737 - - - - - - - - - 0.737 coiled-coil domain containing 102A [Source:HGNC Symbol;Acc:HGNC:28097]
44. MED28 ENSGALG00000007138 7686 0.737 - - - - - - 0.737 - - - mediator complex subunit 28 [Source:HGNC Symbol;Acc:HGNC:24628]
45. DEF8 ENSGALG00000025712 790 0.737 - - - - - - - - 0.737 - differentially expressed in FDCP 8 homolog [Source:HGNC Symbol;Acc:HGNC:25969]
46. TMEM260 ENSGALG00000012118 2191 0.736 - - - - - - 0.736 - - - transmembrane protein 260 [Source:HGNC Symbol;Acc:HGNC:20185]
47. KIAA1715 KIAA1715 4237 0.735 - - - - - - - 0.735 - -
48. MNT ENSGALG00000005830 1908 0.733 - - - - - - - 0.733 - - MAX network transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:7188]
49. FAM135A ENSGALG00000015969 2218 0.732 - - - - - - - 0.732 - - family with sequence similarity 135 member A [Source:HGNC Symbol;Acc:HGNC:21084]
50. FBXO5 ENSGALG00000013607 6156 0.731 - - - - - - 0.731 - - - F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
51. DOPEY1 279 0.73 - - - - - - - - - 0.730 dopey family member 1, transcript variant X8
52. EP300 ENSGALG00000011992 12490 0.728 - - - - - - - 0.728 - - E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
53. CPD ENSGALG00000004295 8199 0.728 - - - - - - - 0.728 - - carboxypeptidase D [Source:HGNC Symbol;Acc:HGNC:2301]
54. NFKBIA ENSGALG00000027864 1158 0.727 - - - - - - 0.727 - - - NFKB inhibitor alpha [Source:NCBI gene;Acc:396093]
55. MAN2C1 ENSGALG00000001615 2362 0.725 - - - - - - 0.725 - - - mannosidase alpha class 2C member 1 [Source:NCBI gene;Acc:415306]
56. CSTB ENSGALG00000014410 7346 0.725 - - - - - - - 0.725 - - cystatin B [Source:NCBI gene;Acc:418267]
57. PTPRM ENSGALG00000031284 864 0.724 - - - - - - - 0.724 - - protein tyrosine phosphatase, receptor type M [Source:HGNC Symbol;Acc:HGNC:9675]
58. FAM221A ENSGALG00000010977 695 0.723 - - - - - - - - - 0.723 family with sequence similarity 221 member A [Source:HGNC Symbol;Acc:HGNC:27977]
59. RALGAPA1 ENSGALG00000010088 6005 0.723 - - - - - - - 0.723 - - Ral GTPase activating protein catalytic alpha subunit 1 [Source:NCBI gene;Acc:423327]
60. PLA2R1 ENSGALG00000011149 1964 0.722 - - - - - - - - - 0.722 phospholipase A2 receptor 1 [Source:NCBI gene;Acc:404304]
61. RAB24 ENSGALG00000002984 6264 0.722 - - - - - - 0.722 - - - RAB24, member RAS oncogene family [Source:NCBI gene;Acc:427627]
62. GRAMD4 ENSGALG00000034274 3826 0.722 - - - - - - - 0.722 - - GRAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:29113]
63. CLTCL1 ENSGALG00000041760 9351 0.72 - - - - - - 0.720 - - - clathrin, heavy chain-like 1, transcript variant X6
64. TOP3A ENSGALG00000005028 535 0.72 - - - - - - 0.720 - - - DNA topoisomerase III alpha [Source:NCBI gene;Acc:416517]
65. AP3S2 ENSGALG00000008291 7574 0.718 - - - - - - 0.718 - - - adaptor related protein complex 3 sigma 2 subunit [Source:NCBI gene;Acc:415581]
66. SNTB2 ENSGALG00000027482 44 0.718 - - - - - - - - - 0.718 syntrophin beta 2 [Source:HGNC Symbol;Acc:HGNC:11169]
67. PRKAR1A ENSGALG00000004237 4785 0.718 - - - - - - - 0.718 - - protein kinase cAMP-dependent type I regulatory subunit alpha [Source:NCBI gene;Acc:417438]
68. RFNG ENSGALG00000002841 1643 0.717 - - - - - - 0.717 - - - RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395789]
69. FANCM ENSGALG00000031182 1030 0.716 - - - - - - - - - 0.716 FA complementation group M [Source:HGNC Symbol;Acc:HGNC:23168]
70. C12orf5 C12orf5 1463 0.716 - - - - - - - 0.716 - -
71. DOT1L ENSGALG00000000843 3301 0.715 - - - - - - 0.715 - - - DOT1 like histone lysine methyltransferase [Source:HGNC Symbol;Acc:HGNC:24948]
72. GRSF1 2406 0.715 - - - - - - - - 0.715 - G-rich RNA sequence binding factor 1, transcript variant X2
73. CBWD1 ENSGALG00000010147 2765 0.714 - - - - - - 0.714 - - - COBW domain containing 1 [Source:NCBI gene;Acc:427347]
74. ERGIC1 ENSGALG00000002863 3296 0.714 - - - - - - 0.714 - - - endoplasmic reticulum-golgi intermediate compartment 1 [Source:HGNC Symbol;Acc:HGNC:29205]
75. PPFIA1 ENSGALG00000035774 5258 0.714 - - - - - - - 0.714 - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
76. SGSH ENSGALG00000007027 1115 0.713 - - - - - - - 0.713 - - N-sulfoglucosamine sulfohydrolase [Source:HGNC Symbol;Acc:HGNC:10818]
77. CHP1 ENSGALG00000008569 6876 0.713 - - - - - - 0.713 - - - calcineurin like EF-hand protein 1 [Source:NCBI gene;Acc:423211]
78. gga-mir-1787 ENSGALG00000025542 1373 0.713 - - - - - - 0.713 - - - gga-mir-1787 [Source:miRBase;Acc:MI0007530]
79. PSAT1 ENSGALG00000015180 4752 0.713 - - - - - - 0.713 - - - phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]
80. NUPL2 ENSGALG00000010942 2442 0.711 - - - - - - 0.711 - - - nucleoporin like 2 [Source:NCBI gene;Acc:420614]
81. ANKZF1 ENSGALG00000011332 2247 0.711 - - - - - - - 0.711 - - ankyrin repeat and zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25527]
82. POLDIP2 ENSGALG00000003211 11664 0.711 - - - - - - 0.711 - - - DNA polymerase delta interacting protein 2 [Source:NCBI gene;Acc:417565]
83. INTS12 ENSGALG00000010575 2976 0.711 - - - - - - 0.711 - - - integrator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:25067]
84. ATG5 ENSGALG00000015387 7752 0.71 - - - - - - 0.710 - - - autophagy related 5 [Source:NCBI gene;Acc:421784]
85. CL2 ENSGALG00000011455 87 0.71 - - - - - 0.710 - - - - liver ribonuclease A [Source:NCBI gene;Acc:422633]
86. ATAD5 ENSGALG00000003294 4830 0.709 - - - - - - - - 0.709 - ATPase family, AAA domain containing 5 [Source:NCBI gene;Acc:417408]
87. PTPA ENSGALG00000036965 2366 0.709 - - - - - - - 0.709 - - protein phosphatase 2 phosphatase activator [Source:NCBI gene;Acc:426329]
88. PMS1 ENSGALG00000034011 2031 0.709 - - - - - - - 0.709 - - PMS1 homolog 1, mismatch repair system component [Source:NCBI gene;Acc:423980]
89. CASKIN1 604 0.709 - - - - - - - - 0.709 - CASK interacting protein 1, transcript variant X4
90. MAT2B ENSGALG00000001750 2599 0.709 - - - - - - 0.709 - - - methionine adenosyltransferase 2B [Source:HGNC Symbol;Acc:HGNC:6905]
91. ODZ2 ODZ2 1380 0.708 - - - - - - 0.708 - - -
92. TLK1 ENSGALG00000009569 5446 0.708 - - - - - - - 0.708 - - tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
93. KIAA0922 4430 0.708 - - - - - - - 0.708 - - KIAA0922, transcript variant X4
94. C11ORF75 C11ORF75 2874 0.708 - - - - - - 0.708 - - -
95. NDST2 ENSGALG00000005107 4224 0.707 - - - - - - 0.707 - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
96. TIMMDC1 ENSGALG00000024480 9337 0.706 - - - - - - 0.706 - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
97. PPAPDC2 PPAPDC2 1976 0.706 - - - - - - 0.706 - - -
98. GPR116 GPR116 324 0.706 - - - - - - - - - 0.706
99. ZNF622 ENSGALG00000037171 5706 0.706 - - - - - - 0.706 - - - zinc finger protein 622 [Source:NCBI gene;Acc:373921]
100. RNH1 ENSGALG00000006904 14542 0.705 - - - - - - 0.705 - - - ribonuclease/angiogenin inhibitor 1 [Source:NCBI gene;Acc:423111]

There are 13 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA