Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CTCF

Gene Name Gene ID Reads Annotation
CTCF 10811 CCCTC-binding factor, transcript variant X2











Genes with expression patterns similar to CTCF

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CTCF 10811 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 CCCTC-binding factor, transcript variant X2
2. TTC3 ENSGALG00000016050 4115 1.748 - - - - - - 0.852 - - 0.896 tetratricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:12393]
3. SAFB2 ENSGALG00000001948 10238 1.722 - - - - - - 0.810 0.912 - - scaffold attachment factor B2, transcript variant X6
4. GNPAT ENSGALG00000011163 4286 1.714 - - - - - - - 0.813 - 0.901 glyceronephosphate O-acyltransferase [Source:HGNC Symbol;Acc:HGNC:4416]
5. PHF2 ENSGALG00000039208 2003 1.713 - - - - - - 0.807 - - 0.906 PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
6. PRKAB2 ENSGALG00000001678 1999 1.702 - - - - - - - 0.766 - 0.936 protein kinase AMP-activated non-catalytic subunit beta 2 [Source:NCBI gene;Acc:427017]
7. ZNF142 ENSGALG00000011393 2078 1.694 - - - - - - - 0.751 - 0.943 zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
8. ARHGAP11A ENSGALG00000009731 6817 1.691 - - - - - - 0.775 - - 0.916 Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
9. BLOC1S5 ENSGALG00000012782 5885 1.684 - - - - - - 0.774 0.910 - - biogenesis of lysosomal organelles complex 1 subunit 5 [Source:NCBI gene;Acc:420866]
10. SUPV3L1 ENSGALG00000004197 4141 1.68 - - - - - - 0.727 - - 0.953 Suv3 like RNA helicase [Source:NCBI gene;Acc:423697]
11. STX16 ENSGALG00000007541 6458 1.676 - - - - - - 0.862 0.814 - - syntaxin 16 [Source:NCBI gene;Acc:419315]
12. COQ6 ENSGALG00000010197 3283 1.675 - - - - - - 0.747 - - 0.928 coenzyme Q6, monooxygenase [Source:HGNC Symbol;Acc:HGNC:20233]
13. IMPA2 ENSGALG00000013814 4202 1.67 - - - - - - 0.771 - - 0.899 inositol monophosphatase 2 [Source:HGNC Symbol;Acc:HGNC:6051]
14. HEATR5A 1233 1.666 - - - - - - 0.745 - - 0.921 HEAT repeat containing 5A, transcript variant X7
15. ANKRA2 ENSGALG00000013511 3460 1.666 - - - - - - 0.729 - - 0.937 ankyrin repeat family A member 2 [Source:NCBI gene;Acc:426153]
16. KIF25 ENSGALG00000011299 2601 1.665 - - - - - - - 0.782 - 0.883 kinesin family member 25 [Source:HGNC Symbol;Acc:HGNC:6390]
17. MED17 ENSGALG00000017218 5821 1.653 - - - - - - 0.783 - - 0.870 mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
18. MLST8 ENSGALG00000005878 8116 1.649 - - - - - - 0.742 - - 0.907 MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
19. CHTF8 ENSGALG00000000632 7230 1.649 - - - - - - - 0.791 - 0.858 chromosome transmission fidelity factor 8 [Source:NCBI gene;Acc:769609]
20. HPS4 ENSGALG00000005595 2217 1.63 - - - - - - 0.702 - - 0.928 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 [Source:HGNC Symbol;Acc:HGNC:15844]
21. TOR1AIP1 ENSGALG00000029238 5843 1.625 - - - - - - 0.763 - - 0.862 torsin 1A interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29456]
22. SLC15A4 ENSGALG00000002695 2729 1.617 - - - - - - 0.728 - - 0.889 solute carrier family 15 member 4 [Source:HGNC Symbol;Acc:HGNC:23090]
23. CKI CKI 2845 1.616 - - - - - - 0.705 - - 0.911
24. SAR1B ENSGALG00000038753 6493 1.612 - - - - - - 0.838 0.774 - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
25. CAPN15 ENSGALG00000002018 3353 1.609 - - - - - - 0.701 - - 0.908 calpain 15 [Source:HGNC Symbol;Acc:HGNC:11182]
26. MRPL15 ENSGALG00000041086 16820 1.604 - - - - - - 0.739 - - 0.865 mitochondrial ribosomal protein L15 [Source:NCBI gene;Acc:421121]
27. SIPA1L2 ENSGALG00000037506 3651 1.597 - - - - - - - 0.801 - 0.796 signal induced proliferation associated 1 like 2 [Source:HGNC Symbol;Acc:HGNC:23800]
28. GLRX3 ENSGALG00000010464 22578 1.587 - - - - - - 0.836 - - 0.751 glutaredoxin 3 [Source:NCBI gene;Acc:423968]
29. KIAA1671 ENSGALG00000005512 2540 1.583 - - - - - - 0.749 - - 0.834 KIAA1671 [Source:NCBI gene;Acc:768701]
30. SAP130 ENSGALG00000002070 9814 1.583 - - - - - - - 0.872 - 0.711 Sin3A associated protein 130 [Source:NCBI gene;Acc:424756]
31. EHD3 ENSGALG00000009086 14407 1.58 - - - - - - 0.813 - - 0.767 EH domain containing 3 [Source:NCBI gene;Acc:421306]
32. SBNO1 ENSGALG00000003392 6731 1.578 - - - - - - 0.727 - - 0.851 strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
33. MDN1 ENSGALG00000015733 2352 1.577 - - - - - - - - 0.710 0.867 midasin AAA ATPase 1, transcript variant X1
34. FBXO30 ENSGALG00000041684 3033 1.575 - - - - - - 0.754 - - 0.821 F-box protein 30 [Source:HGNC Symbol;Acc:HGNC:15600]
35. MYCL ENSGALG00000024047 10367 1.567 - - - - - - 0.723 - - 0.844 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
36. MADH2 MADH2 13017 1.566 - - - - - - 0.740 0.826 - -
37. SPEN ENSGALG00000036932 9688 1.562 - - - - - - 0.833 - - 0.729 spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
38. TET1 ENSGALG00000031604 13002 1.562 - - - - - - 0.746 - - 0.816 tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
39. ANKRD50 ENSGALG00000011831 2870 1.558 - - - - - - 0.781 - - 0.777 ankyrin repeat domain 50 [Source:HGNC Symbol;Acc:HGNC:29223]
40. gga-mir-6596 ENSGALG00000026117 2893 1.552 - - - - - - 0.732 0.820 - - gga-mir-6596 [Source:miRBase;Acc:MI0022416]
41. NASP ENSGALG00000010255 28423 1.55 - - - - - - 0.772 - - 0.778 nuclear autoantigenic sperm protein, transcript variant X3
42. FERMT2 ENSGALG00000012425 5480 1.542 - - - - - - 0.724 - - 0.818 fermitin family member 2 [Source:HGNC Symbol;Acc:HGNC:15767]
43. RPS6KA RPS6KA 6745 1.535 - - - - - - 0.713 0.822 - -
44. LSMD1 LSMD1 2562 1.525 - - - - - - 0.707 0.818 - -
45. ZMYM3 ENSGALG00000005533 2927 1.523 - - - - - - 0.742 0.781 - - zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
46. NUDT4 ENSGALG00000011285 2998 1.521 - - - - - - 0.734 0.787 - - nudix hydrolase 4, transcript variant X5
47. ARPC2 ENSGALG00000011452 7338 1.516 - - - - - - 0.707 - 0.809 - actin related protein 2/3 complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:705]
48. MRPL55 5995 1.515 - - - - - - 0.779 - - 0.736 mitochondrial ribosomal protein L55
49. SBNO2 ENSGALG00000037522 1546 1.511 - - - - - - 0.741 - 0.770 - strawberry notch homolog 2 [Source:HGNC Symbol;Acc:HGNC:29158]
50. IP6K2 ENSGALG00000005701 12539 1.508 - - - - - - 0.798 - - 0.710 inositol hexakisphosphate kinase 2 [Source:NCBI gene;Acc:416010]
51. CSTF2 ENSGALG00000006760 8820 1.502 - - - - - - 0.721 - - 0.781 cleavage stimulation factor subunit 2 [Source:NCBI gene;Acc:422258]
52. METTL6 ENSGALG00000040665 4467 1.501 - - - - - - 0.788 - - 0.713 methyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:28343]
53. GRAMD3 1685 1.495 - - - - - - 0.702 - - 0.793 GRAM domain containing 3, transcript variant X9
54. GTF2H2 ENSGALG00000002399 2361 1.494 - - - - - - 0.751 - - 0.743 general transcription factor IIH subunit 2, transcript variant X2
55. FAM18B1 ENSGALG00000001335 5177 1.487 - - - - - - 0.772 - 0.715 - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
56. IGFBP7 ENSGALG00000037332 2993 1.486 - - - - - - 0.704 0.782 - - insulin like growth factor binding protein 7, transcript variant X1
57. TAF15 ENSGALG00000002060 12320 1.483 - - - - - - 0.758 - 0.725 - TATA-box binding protein associated factor 15 [Source:HGNC Symbol;Acc:HGNC:11547]
58. GNS ENSGALG00000009856 3045 1.475 - - - - - - 0.738 - 0.737 - glucosamine (N-acetyl)-6-sulfatase [Source:NCBI gene;Acc:417829]
59. ANAPC1 ENSGALG00000008254 2519 1.472 - - - - - - 0.700 - - 0.772 anaphase promoting complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:19988]
60. NOC2L ENSGALG00000002222 6569 1.469 - - - - - - 0.713 - - 0.756 NOC2 like nucleolar associated transcriptional repressor [Source:NCBI gene;Acc:419433]
61. MED27 ENSGALG00000003683 6808 1.465 - - - - - - 0.716 - - 0.749 mediator complex subunit 27 [Source:NCBI gene;Acc:417172]
62. IREB2 ENSGALG00000035462 10659 1.458 - - - - - - 0.734 - - 0.724 iron responsive element binding protein 2 [Source:NCBI gene;Acc:427490]
63. SUDS3 ENSGALG00000007393 8322 1.454 - - - - - - 0.711 - - 0.743 SDS3 homolog, SIN3A corepressor complex component [Source:NCBI gene;Acc:427713]
64. PPP1CC ENSGALG00000004571 14748 1.44 - - - - - - 0.707 - - 0.733 protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
65. PPIH ENSGALG00000004874 25558 1.435 - - - - - - 0.702 - - 0.733 peptidylprolyl isomerase H [Source:NCBI gene;Acc:419507]
66. C15orf40 C15orf40 3212 1.433 - - - - - - 0.731 0.702 - -
67. EMG1 ENSGALG00000014568 8102 1.415 - - - - - - 0.706 - - 0.709 EMG1, N1-specific pseudouridine methyltransferase [Source:NCBI gene;Acc:418292]
68. CHORDC1 ENSGALG00000035461 2439 1.415 - - - - - - 0.700 - - 0.715 cysteine and histidine rich domain containing 1 [Source:NCBI gene;Acc:419009]
69. RGP1 ENSGALG00000002394 5937 0.959 - - - - - - - - - 0.959 RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
70. MAP3K8 ENSGALG00000007356 188 0.958 - - - - - - - - - 0.958 mitogen-activated protein kinase kinase kinase 8 [Source:HGNC Symbol;Acc:HGNC:6860]
71. UBE3C ENSGALG00000006461 57 0.958 - - - - - - - - - 0.958 ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
72. ENSGALG00000008594 ENSGALG00000008594 54 0.957 - - - - - - - - - 0.957
73. ADAMTS12 55 0.957 - - - - - - - - - 0.957 ADAM metallopeptidase with thrombospondin type 1 motif 12, transcript variant X2
74. SOS2 ENSGALG00000012273 41 0.957 - - - - - - - - - 0.957 SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:11188]
75. BCOR ENSGALG00000016245 85 0.957 - - - - - - - - - 0.957 BCL6 corepressor, transcript variant X8
76. ATP2B2 ENSGALG00000030908 584 0.957 - - - - - - - - - 0.957 ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
77. ENSGALG00000027621 ENSGALG00000027621 863 0.956 - - - - - - - - - 0.956
78. VAV2 ENSGALG00000002699 503 0.956 - - - - - - - - - 0.956 vav guanine nucleotide exchange factor 2 [Source:NCBI gene;Acc:373938]
79. CNKSR3 ENSGALG00000027159 41 0.956 - - - - - - - - - 0.956 CNKSR family member 3, transcript variant X2
80. TM6SF2 ENSGALG00000029015 109 0.956 - - - - - - - - - 0.956 transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
81. AGMO ENSGALG00000010792 76 0.955 - - - - - - - - - 0.955 alkylglycerol monooxygenase [Source:HGNC Symbol;Acc:HGNC:33784]
82. CENPJ ENSGALG00000017148 1415 0.955 - - - - - - - - - 0.955 centromere protein J [Source:HGNC Symbol;Acc:HGNC:17272]
83. PDCD7 ENSGALG00000021027 3807 0.955 - - - - - - - - - 0.955 programmed cell death 7 [Source:HGNC Symbol;Acc:HGNC:8767]
84. TRIP4 ENSGALG00000030672 1255 0.955 - - - - - - - - - 0.955 thyroid hormone receptor interactor 4 [Source:HGNC Symbol;Acc:HGNC:12310]
85. STX6 3297 0.954 - - - - - - - - - 0.954 syntaxin 6
86. TTI1 ENSGALG00000006791 1218 0.954 - - - - - - - - - 0.954 TELO2 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29029]
87. GPR114 GPR114 46 0.954 - - - - - - - - - 0.954
88. MAP3K3 ENSGALG00000000525 115 0.953 - - - - - - - - - 0.953 mitogen-activated protein kinase kinase kinase 3 [Source:HGNC Symbol;Acc:HGNC:6855]
89. ENSGALG00000004772 ENSGALG00000004772 173 0.953 - - - - - - - - - 0.953
90. TNFRSF21 ENSGALG00000016719 2762 0.951 - - - - - - - - - 0.951 TNF receptor superfamily member 21 [Source:NCBI gene;Acc:422062]
91. PRICKLE1 ENSGALG00000009556 60 0.951 - - - - - - - - - 0.951 prickle planar cell polarity protein 1 [Source:HGNC Symbol;Acc:HGNC:17019]
92. ENSGALG00000018358 ENSGALG00000018358 101 0.951 - - - - - - - - - 0.951
93. PROCR ENSGALG00000006547 645 0.951 - - - - - - - - - 0.951 protein C receptor [Source:NCBI gene;Acc:424867]
94. PTPRE ENSGALG00000009823 250 0.95 - - - - - - - - - 0.950 protein tyrosine phosphatase, receptor type E [Source:HGNC Symbol;Acc:HGNC:9669]
95. MITF ENSGALG00000039583 865 0.949 - - - - - - - - - 0.949 melanogenesis associated transcription factor [Source:NCBI gene;Acc:395886]
96. CCBL2 CCBL2 184 0.949 - - - - - - - - - 0.949
97. NFKBIE ENSGALG00000044525 633 0.949 - - - - - - - - - 0.949 NFKB inhibitor epsilon [Source:HGNC Symbol;Acc:HGNC:7799]
98. GRPEL2 ENSGALG00000002673 105 0.949 - - - - - - - - - 0.949 GrpE like 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:21060]
99. PCMTD2 ENSGALG00000005901 1833 0.949 - - - - - - - - - 0.949 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
100. TRIM3 ENSGALG00000034004 110 0.947 - - - - - - - - - 0.947 tripartite motif containing 3 [Source:HGNC Symbol;Acc:HGNC:10064]

There are 1046 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA