Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CSTF3

Gene Name Gene ID Reads Annotation
CSTF3 ENSGALG00000011685 4711 cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]











Genes with expression patterns similar to CSTF3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CSTF3 ENSGALG00000011685 4711 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]
2. URM1 ENSGALG00000004971 17880 2.314 - - 0.784 - - - 0.804 0.726 - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
3. ACOX1 ENSGALG00000002159 2953 2.298 - - 0.817 - - - - 0.726 - 0.755 acyl-CoA oxidase 1 [Source:NCBI gene;Acc:417366]
4. SELM SELM 6366 1.721 - - 0.874 - - - 0.847 - - -
5. ZNF142 ENSGALG00000011393 2078 1.692 - - - - - - 0.880 - - 0.812 zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
6. RAB3IP ENSGALG00000009959 1652 1.664 - - 0.817 - - - 0.847 - - - RAB3A interacting protein, transcript variant X1
7. ATG4B ENSGALG00000006298 2288 1.657 - - - - - - 0.863 - - 0.794 autophagy related 4B cysteine peptidase [Source:NCBI gene;Acc:404750]
8. SQLE ENSGALG00000036915 4172 1.636 - - 0.802 - - - 0.834 - - - squalene epoxidase [Source:NCBI gene;Acc:420335]
9. TUBA4A ENSGALG00000000433 1367 1.629 - - 0.827 - - - 0.802 - - - tubulin alpha 4a
10. PEX16 ENSGALG00000008421 3684 1.62 - - - - - - 0.840 - - 0.780 peroxisomal biogenesis factor 16 [Source:HGNC Symbol;Acc:HGNC:8857]
11. RGP1 ENSGALG00000002394 5937 1.618 - - - - - - - 0.794 - 0.824 RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
12. COQ7 ENSGALG00000006861 5118 1.61 - - - - - - 0.791 - - 0.819 coenzyme Q7, hydroxylase [Source:NCBI gene;Acc:416609]
13. NAT9 ENSGALG00000007723 2098 1.607 - - - - - - 0.869 - - 0.738 N-acetyltransferase 9 (putative), transcript variant X7
14. SRP72 ENSGALG00000011403 13666 1.6 - - 0.704 - - - 0.896 - - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
15. RNF20 ENSGALG00000015548 7199 1.594 - - 0.732 - - - 0.862 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
16. CEPT1 ENSGALG00000000142 4219 1.575 - - 0.758 - - - - - - 0.817 choline/ethanolamine phosphotransferase 1 [Source:NCBI gene;Acc:421152]
17. SEC22B ENSGALG00000039704 16080 1.574 - - 0.771 - - - 0.803 - - - SEC22 homolog B, vesicle trafficking protein [Source:NCBI gene;Acc:424377]
18. PEMT ENSGALG00000004875 4094 1.569 - - 0.851 - - - - 0.718 - - phosphatidylethanolamine N-methyltransferase [Source:NCBI gene;Acc:416508]
19. PDCD4 ENSGALG00000008700 574 1.568 - - - - - 0.737 - - - 0.831 programmed cell death 4 [Source:NCBI gene;Acc:374191]
20. SPG11 ENSGALG00000008180 1890 1.562 - - 0.700 - - - 0.862 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
21. WDR92 ENSGALG00000008760 3934 1.56 - - 0.828 - - - 0.732 - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
22. SLIT2 ENSGALG00000041121 3223 1.552 - - 0.804 - - - 0.748 - - - slit guidance ligand 2 [Source:NCBI gene;Acc:373967]
23. PHACTR4 ENSGALG00000042485 3523 1.544 - - - - - - 0.819 0.725 - - phosphatase and actin regulator 4 [Source:HGNC Symbol;Acc:HGNC:25793]
24. MBNL1 ENSGALG00000029190 3953 1.539 - - 0.731 - - - 0.808 - - - muscleblind like splicing regulator 1 [Source:NCBI gene;Acc:425033]
25. ARHGAP19 ENSGALG00000007609 3655 1.536 - - - - - - 0.756 - - 0.780 Rho GTPase activating protein 19 [Source:NCBI gene;Acc:423846]
26. STAU1 ENSGALG00000004736 3828 1.533 - - 0.818 - - - - - - 0.715 staufen double-stranded RNA binding protein 1 [Source:NCBI gene;Acc:419213]
27. DNPEP ENSGALG00000011318 10623 1.529 - - - - - - 0.808 0.721 - - aspartyl aminopeptidase [Source:NCBI gene;Acc:424200]
28. ZNF451 ENSGALG00000016282 3380 1.529 - - 0.762 - - - 0.767 - - - zinc finger protein 451 [Source:HGNC Symbol;Acc:HGNC:21091]
29. SHROOM2 ENSGALG00000030802 4517 1.521 - - 0.769 - - - 0.752 - - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
30. NDC1 ENSGALG00000031606 3094 1.521 - - 0.816 - - - - - - 0.705 NDC1 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:25525]
31. SNN ENSGALG00000028876 1687 1.519 - - 0.792 - - - - - - 0.727 stannin [Source:NCBI gene;Acc:416429]
32. KDM6A ENSGALG00000016217 2302 1.516 - - 0.809 - - - - - - 0.707 lysine demethylase 6A, transcript variant X14
33. COIL ENSGALG00000003158 7806 1.512 - - - - - - 0.774 0.738 - - coilin [Source:HGNC Symbol;Acc:HGNC:2184]
34. FAM96B 14435 1.507 - - - - - - - 0.730 - 0.777 family with sequence similarity 96 member B
35. EMC7 ENSGALG00000009637 4969 1.506 - - - - - - 0.713 - - 0.793 ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
36. HCCS ENSGALG00000005571 4939 1.502 - - 0.714 - - - - 0.788 - - holocytochrome c synthase [Source:NCBI gene;Acc:424482]
37. NAA35 ENSGALG00000012598 6409 1.5 - - - - - - 0.716 0.784 - - N(alpha)-acetyltransferase 35, NatC auxiliary subunit [Source:NCBI gene;Acc:427461]
38. SURF6 ENSGALG00000038413 11178 1.491 - - 0.752 - - - 0.739 - - - surfeit 6 [Source:NCBI gene;Acc:417160]
39. HNRNPLL ENSGALG00000008504 14719 1.489 - - 0.767 - - - 0.722 - - - heterogeneous nuclear ribonucleoprotein L like [Source:NCBI gene;Acc:416702]
40. SBNO1 ENSGALG00000003392 6731 1.48 - - 0.731 - - - - - - 0.749 strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
41. SLC25A1 ENSGALG00000041760 4744 1.478 - - 0.735 - - - 0.743 - - - solute carrier family 25 member 1, transcript variant X2
42. DNM1L ENSGALG00000012929 6174 1.476 - - 0.754 - - - - 0.722 - - dynamin 1 like [Source:NCBI gene;Acc:418132]
43. EFNB2 ENSGALG00000029175 5664 1.467 - - - - - - 0.763 - - 0.704 ephrin B2 [Source:NCBI gene;Acc:395625]
44. RIT1 ENSGALG00000014647 7174 1.452 - - - - - - 0.742 0.710 - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
45. BNIP3L ENSGALG00000043405 10316 1.448 - - 0.732 - - - - 0.716 - - BCL2 interacting protein 3 like [Source:NCBI gene;Acc:419522]
46. PRKACB ENSGALG00000028530 12506 1.435 - - 0.719 - - - - 0.716 - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
47. SLC12A4 ENSGALG00000034179 5674 1.43 - - 0.702 - - - - 0.728 - - solute carrier family 12 member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
48. SNRNP48 ENSGALG00000013005 1468 0.936 - - - - - - 0.936 - - - small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
49. FAM193A ENSGALG00000015667 3075 0.916 - - - - - - 0.916 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
50. EIF3I ENSGALG00000003337 28832 0.913 - - - - - - 0.913 - - - eukaryotic translation initiation factor 3 subunit I [Source:NCBI gene;Acc:419653]
51. NUP205 ENSGALG00000011662 4157 0.913 - - - - - - 0.913 - - - nucleoporin 205
52. SMG1 ENSGALG00000006829 1875 0.907 - - - - - - 0.907 - - - SMG1, nonsense mediated mRNA decay associated PI3K related kinase [Source:HGNC Symbol;Acc:HGNC:30045]
53. UCH-L1 UCH-L1 12697 0.905 - - - - - - 0.905 - - -
54. NDUFV3 ENSGALG00000022813 4456 0.902 - - - - - - 0.902 - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:NCBI gene;Acc:418541]
55. WIPI1 ENSGALG00000004215 3359 0.901 - - - - - - 0.901 - - - WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]
56. BRD1 ENSGALG00000029379 6047 0.894 - - - - - - 0.894 - - - bromodomain containing 1 [Source:NCBI gene;Acc:417731]
57. BAG5 ENSGALG00000031062 4498 0.89 - - 0.890 - - - - - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
58. CANX ENSGALG00000032148 11297 0.889 - - - - - - 0.889 - - - calnexin [Source:NCBI gene;Acc:416288]
59. CDC73 ENSGALG00000002469 4586 0.887 - - - - - - 0.887 - - - cell division cycle 73 [Source:NCBI gene;Acc:424356]
60. IK ENSGALG00000037172 12100 0.886 - - - - - - 0.886 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
61. CMSS1 ENSGALG00000015267 2954 0.884 - - - - - - 0.884 - - - cms1 ribosomal small subunit homolog (yeast) [Source:NCBI gene;Acc:418381]
62. NIN ENSGALG00000012361 2284 0.882 - - - - - - 0.882 - - - ninein [Source:HGNC Symbol;Acc:HGNC:14906]
63. DIEXF ENSGALG00000009887 4782 0.879 - - - - - - 0.879 - - - digestive organ expansion factor homolog (zebrafish) [Source:NCBI gene;Acc:421384]
64. CMIP ENSGALG00000038494 5016 0.879 - - - - - - - - - 0.879 c-Maf inducing protein [Source:HGNC Symbol;Acc:HGNC:24319]
65. MBNL2 ENSGALG00000016890 3162 0.878 - - - - - - 0.878 - - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
66. LFNG ENSGALG00000038515 5178 0.878 - - - - - - 0.878 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
67. XPO7 ENSGALG00000001838 1875 0.878 - - - - - - 0.878 - - - exportin 7 [Source:NCBI gene;Acc:426925]
68. ASB6 ENSGALG00000004378 1080 0.878 - - - - - - 0.878 - - - ankyrin repeat and SOCS box containing 6 [Source:NCBI gene;Acc:417194]
69. ENSGALG00000028164 ENSGALG00000028164 3325 0.877 - - - - - - 0.877 - - -
70. ATM ENSGALG00000017159 893 0.876 - - - - - - 0.876 - - - ATM serine/threonine kinase [Source:NCBI gene;Acc:395401]
71. CCDC101 CCDC101 9111 0.875 - - - - - - 0.875 - - -
72. PARD3B ENSGALG00000042645 2893 0.875 - - - - - - 0.875 - - - par-3 family cell polarity regulator beta [Source:HGNC Symbol;Acc:HGNC:14446]
73. RFT1 ENSGALG00000001945 2446 0.874 - - - - - - 0.874 - - - RFT1 homolog [Source:NCBI gene;Acc:770487]
74. LONP1 ENSGALG00000040492 7133 0.874 - - - - - - 0.874 - - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
75. KANK4 ENSGALG00000010953 726 0.873 - - - - - - 0.873 - - - KN motif and ankyrin repeat domains 4 [Source:HGNC Symbol;Acc:HGNC:27263]
76. NDUFC2 ENSGALG00000029172 26136 0.873 - - 0.873 - - - - - - - NADH:ubiquinone oxidoreductase subunit C2 [Source:NCBI gene;Acc:404751]
77. NSG1 ENSGALG00000015010 5829 0.872 - - - - - - 0.872 - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
78. SPAG9 ENSGALG00000034001 2314 0.871 - - - - - - 0.871 - - - sperm associated antigen 9 [Source:HGNC Symbol;Acc:HGNC:14524]
79. CCNL1 ENSGALG00000009699 1033 0.871 - - - - - - 0.871 - - - cyclin L1 [Source:HGNC Symbol;Acc:HGNC:20569]
80. MST1 ENSGALG00000002722 994 0.871 - - - - - - 0.871 - - - macrophage stimulating 1 (hepatocyte growth factor-like) [Source:NCBI gene;Acc:396135]
81. SUGP1 ENSGALG00000042132 2771 0.87 - - - - - - 0.870 - - - SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:428349]
82. FAM57A ENSGALG00000004820 1492 0.87 - - - - - - 0.870 - - - family with sequence similarity 57 member A [Source:HGNC Symbol;Acc:HGNC:29646]
83. CDC42SE2 ENSGALG00000027258 4725 0.87 - - - - - - 0.870 - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
84. COPS8 ENSGALG00000033385 10166 0.87 - - - - - - 0.870 - - - COP9 signalosome subunit 8 [Source:NCBI gene;Acc:424020]
85. HESX1 ENSGALG00000005506 203 0.869 - - - - - - 0.869 - - - HESX homeobox 1 [Source:NCBI gene;Acc:395864]
86. ENSGALG00000013233 ENSGALG00000013233 3265 0.869 - - - - - - 0.869 - - -
87. NSRP1 ENSGALG00000004186 1683 0.869 - - - - - - 0.869 - - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
88. HOXB5 ENSGALG00000034907 3646 0.869 - - 0.869 - - - - - - - homeobox B5 [Source:NCBI gene;Acc:425096]
89. HELLS ENSGALG00000005451 7094 0.868 - - - - - - 0.868 - - - helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
90. CCNE2 ENSGALG00000040794 1229 0.868 - - - - - - 0.868 - - - cyclin E2 [Source:NCBI gene;Acc:420231]
91. FOXK2 ENSGALG00000001577 6346 0.868 - - 0.868 - - - - - - - forkhead box K2 [Source:HGNC Symbol;Acc:HGNC:6036]
92. BMI1 ENSGALG00000041267 6618 0.868 - - - - - - 0.868 - - - BMI1 proto-oncogene, polycomb ring finger [Source:NCBI gene;Acc:493647]
93. C14orf80 C14orf80 1921 0.868 - - - - - - 0.868 - - -
94. ZFYVE19 ENSGALG00000008460 2750 0.866 - - - - - - 0.866 - - - zinc finger FYVE-type containing 19 [Source:NCBI gene;Acc:423204]
95. MRPL10 ENSGALG00000014387 12386 0.866 - - - - - - 0.866 - - - mitochondrial ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:14055]
96. INTS7 ENSGALG00000009843 2395 0.866 - - - - - - 0.866 - - - integrator complex subunit 7 [Source:NCBI gene;Acc:421374]
97. LSM10 ENSGALG00000002127 2519 0.866 - - - - - - 0.866 - - - LSM10, U7 small nuclear RNA associated [Source:HGNC Symbol;Acc:HGNC:17562]
98. PKN3 532 0.866 - - - - - - 0.866 - - - protein kinase N3, transcript variant X2
99. RNF220 ENSGALG00000010109 3114 0.865 - - - - - - - - - 0.865 ring finger protein 220 [Source:NCBI gene;Acc:424580]
100. CALSYNTENIN-1 CALSYNTENIN-1 11195 0.865 - - 0.865 - - - - - - -

There are 919 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA