Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CPSF6

Gene Name Gene ID Reads Annotation
CPSF6 ENSGALG00000019355 7634 cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]











Genes with expression patterns similar to CPSF6

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CPSF6 ENSGALG00000019355 7634 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
2. VPS35 ENSGALG00000004375 8059 1.732 - - - - - - 0.844 0.888 - - VPS35, retromer complex component [Source:NCBI gene;Acc:415750]
3. MRPS18A ENSGALG00000010296 11039 1.723 - - - - - - 0.808 0.915 - - mitochondrial ribosomal protein S18A [Source:NCBI gene;Acc:421445]
4. RRP9 ENSGALG00000043359 9747 1.721 - - - - - - 0.905 0.816 - - ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]
5. MCTS1 ENSGALG00000008517 27514 1.684 - - - - - - 0.899 0.785 - - MCTS1, re-initiation and release factor [Source:NCBI gene;Acc:422363]
6. LZTFL1 ENSGALG00000033928 3493 1.668 - - - - - - 0.720 0.948 - - leucine zipper transcription factor like 1 [Source:HGNC Symbol;Acc:HGNC:6741]
7. MYO1B ENSGALG00000007712 8755 1.658 - - - - - - 0.721 0.937 - - myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
8. PUM1 ENSGALG00000042598 9392 1.648 - - - - - - 0.703 0.945 - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
9. RAE1 ENSGALG00000007653 8930 1.638 - - - - - - 0.717 0.921 - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
10. CDC45 ENSGALG00000001616 8432 1.636 - - - - - - 0.710 0.926 - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
11. MZT1 ENSGALG00000016932 9269 1.608 - - - - - - 0.705 0.903 - - mitotic spindle organizing protein 1 [Source:NCBI gene;Acc:418822]
12. SSR3 ENSGALG00000028683 24334 1.604 - - - - - - 0.814 0.790 - - signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]
13. GBAS 18453 1.513 - - - - - - 0.709 0.804 - - glioblastoma amplified sequence
14. KPNA3 ENSGALG00000017009 17330 1.511 - - - - - - 0.716 0.795 - - karyopherin subunit alpha 3 [Source:NCBI gene;Acc:418870]
15. CYTL1 ENSGALG00000015015 4438 0.987 - - - - - - - 0.987 - - cytokine like 1 [Source:HGNC Symbol;Acc:HGNC:24435]
16. SPTAN1 ENSGALG00000004719 20251 0.963 - - - - - - - 0.963 - - spectrin alpha, non-erythrocytic 1 [Source:NCBI gene;Acc:374234]
17. TLK2 ENSGALG00000000410 4690 0.951 - - - - - - - 0.951 - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
18. VIMENTIN VIMENTIN 33105 0.95 - - - - - - - 0.950 - -
19. COX20 ENSGALG00000027440 5881 0.95 - - - - - - - 0.950 - - COX20, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:421493]
20. TCTN3 ENSGALG00000010517 3985 0.95 - - - - - - - 0.950 - - tectonic family member 3 [Source:NCBI gene;Acc:100857412]
21. SLC25A15 ENSGALG00000017032 6773 0.949 - - - - - - - 0.949 - - solute carrier family 25 member 15 [Source:NCBI gene;Acc:418886]
22. PDCD2 ENSGALG00000011169 3594 0.949 - - - - - - - 0.949 - - programmed cell death 2 [Source:NCBI gene;Acc:421550]
23. PRKRIP1 ENSGALG00000001833 5092 0.949 - - - - - - - 0.949 - - PRKR interacting protein 1 [Source:NCBI gene;Acc:417508]
24. URB1 ENSGALG00000015887 5854 0.949 - - - - - - - 0.949 - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17344]
25. FBN2 ENSGALG00000014686 4538 0.948 - - - - - - - 0.948 - - fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
26. ITGA1 ENSGALG00000014891 11378 0.948 - - - - - - - 0.948 - - integrin subunit alpha 1 [Source:NCBI gene;Acc:395951]
27. KIAA1598 KIAA1598 989 0.948 - - - - - - - 0.948 - -
28. ACAD8 ENSGALG00000001557 2562 0.948 - - - - - - - 0.948 - - acyl-CoA dehydrogenase family member 8 [Source:NCBI gene;Acc:419739]
29. PPP1R21 ENSGALG00000008937 2343 0.948 - - - - - - - 0.948 - - protein phosphatase 1 regulatory subunit 21 [Source:NCBI gene;Acc:421287]
30. EXOC4 ENSGALG00000008477 4684 0.948 - - - - - - - 0.948 - - exocyst complex component 4 [Source:NCBI gene;Acc:416700]
31. KCTD10 ENSGALG00000005138 1191 0.948 - - - - - - - 0.948 - - potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:HGNC:23236]
32. PKIB ENSGALG00000027036 1663 0.947 - - - - - - - 0.947 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:NCBI gene;Acc:769402]
33. SLC2A10 ENSGALG00000004498 421 0.947 - - - - - - - 0.947 - - solute carrier family 2 member 10 [Source:HGNC Symbol;Acc:HGNC:13444]
34. KCNE3 ENSGALG00000022696 561 0.947 - - - - - - - 0.947 - - potassium voltage-gated channel subfamily E regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
35. PPP2R3C ENSGALG00000010052 637 0.947 - - - - - - - 0.947 - - protein phosphatase 2 regulatory subunit B''gamma [Source:HGNC Symbol;Acc:HGNC:17485]
36. SLC35E1 ENSGALG00000003794 2563 0.947 - - - - - - - 0.947 - - solute carrier family 35 member E1 [Source:HGNC Symbol;Acc:HGNC:20803]
37. PLA2R1 ENSGALG00000011149 1964 0.947 - - - - - - - 0.947 - - phospholipase A2 receptor 1 [Source:NCBI gene;Acc:404304]
38. KIAA1324L ENSGALG00000030324 1695 0.947 - - - - - - - 0.947 - - KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
39. VATB VATB 13756 0.946 - - - - - - - 0.946 - -
40. CDCA9 ENSGALG00000021225 2244 0.946 - - - - - - - 0.946 - - cell division cycle associated 9 [Source:NCBI gene;Acc:415745]
41. ARL4A ENSGALG00000027757 4285 0.946 - - - - - - - 0.946 - - ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
42. AMOTL2 5217 0.945 - - - - - - - 0.945 - - angiomotin like 2, transcript variant X3
43. KDELR3 ENSGALG00000032313 4376 0.943 - - - - - - - 0.943 - - KDEL endoplasmic reticulum protein retention receptor 3 [Source:NCBI gene;Acc:418026]
44. DGKD ENSGALG00000001730 4456 0.929 - - - - - - - 0.929 - - diacylglycerol kinase delta [Source:HGNC Symbol;Acc:HGNC:2851]
45. CHMP1A ENSGALG00000006161 4195 0.928 - - - - - - - 0.928 - - charged multivesicular body protein 1A [Source:NCBI gene;Acc:415841]
46. KBTBD2 ENSGALG00000038704 2821 0.928 - - - - - - - 0.928 - - kelch repeat and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21751]
47. ENSGALG00000004132 ENSGALG00000004132 9287 0.924 - - - - - - - 0.924 - -
48. AATF ENSGALG00000005420 6501 0.924 - - - - - - - 0.924 - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
49. GPATCH2 ENSGALG00000009627 4061 0.917 - - - - - - - 0.917 - - G-patch domain containing 2 [Source:NCBI gene;Acc:421355]
50. STRN ENSGALG00000010580 7561 0.914 - - - - - - - 0.914 - - striatin [Source:HGNC Symbol;Acc:HGNC:11424]
51. IGF2BP1 ENSGALG00000041204 6420 0.914 - - - - - - - 0.914 - - insulin like growth factor 2 mRNA binding protein 1 [Source:NCBI gene;Acc:395953]
52. KLF10 ENSGALG00000037913 3529 0.907 - - - - - - - 0.907 - - Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]
53. UCH-L1 UCH-L1 12697 0.904 - - - - - - - 0.904 - -
54. MRPL54 ENSGALG00000027611 39450 0.9 - - - - - - 0.900 - - - mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
55. SRSF6 ENSGALG00000000990 12424 0.9 - - - - - - 0.900 - - - serine and arginine rich splicing factor 6 [Source:NCBI gene;Acc:419116]
56. ARPC1A ENSGALG00000004693 11583 0.899 - - - - - - 0.899 - - - actin related protein 2/3 complex subunit 1A [Source:NCBI gene;Acc:770269]
57. KDM5B ENSGALG00000038948 50645 0.894 - - - - - - 0.894 - - - lysine demethylase 5B [Source:NCBI gene;Acc:421168]
58. HIBCH ENSGALG00000043307 11990 0.892 - - - - - - - 0.892 - - 3-hydroxyisobutyryl-CoA hydrolase [Source:NCBI gene;Acc:423979]
59. CAP1 ENSGALG00000036294 18598 0.892 - - - - - - 0.892 - - - cyclase associated actin cytoskeleton regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:20040]
60. PPIC ENSGALG00000005346 5002 0.886 - - - - - - - 0.886 - - peptidylprolyl isomerase C [Source:HGNC Symbol;Acc:HGNC:9256]
61. MTHFD1 ENSGALG00000011797 11001 0.886 - - - - - - - 0.886 - - methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 [Source:NCBI gene;Acc:423508]
62. SPCS3 ENSGALG00000010839 19106 0.883 - - - - - - 0.883 - - - signal peptidase complex subunit 3 [Source:NCBI gene;Acc:396234]
63. MTX2 ENSGALG00000009264 17304 0.882 - - - - - - - 0.882 - - metaxin 2 [Source:HGNC Symbol;Acc:HGNC:7506]
64. INPP5E ENSGALG00000001964 3580 0.881 - - - - - - - 0.881 - - inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
65. UBE2G2 ENSGALG00000005667 12689 0.881 - - - - - - 0.881 - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
66. DTYMK ENSGALG00000006305 11736 0.88 - - - - - - 0.880 - - - deoxythymidylate kinase [Source:NCBI gene;Acc:770258]
67. PHAX ENSGALG00000014691 8114 0.879 - - - - - - 0.879 - - - phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:427124]
68. FAM110A ENSGALG00000046425 5558 0.877 - - - - - - - 0.877 - - family with sequence similarity 110 member A [Source:HGNC Symbol;Acc:HGNC:16188]
69. CASP3 ENSGALG00000010638 11572 0.876 - - - - - - 0.876 - - - caspase 3 [Source:NCBI gene;Acc:395476]
70. ZNF644 ENSGALG00000034253 28348 0.876 - - - - - - - 0.876 - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
71. CYB5A ENSGALG00000013708 8287 0.876 - - - - - - - 0.876 - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
72. PTP4A2 ENSGALG00000003265 24826 0.876 - - - - - - 0.876 - - - protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
73. VDAC3 ENSGALG00000041463 21595 0.875 - - - - - - - 0.875 - - voltage dependent anion channel 3, transcript variant X9
74. NXN 20202 0.872 - - - - - - 0.872 - - - nucleoredoxin, transcript variant X1
75. TPD52L2 ENSGALG00000004683 13624 0.871 - - - - - - 0.871 - - - tumor protein D52 like 2 [Source:NCBI gene;Acc:419257]
76. SRRM1 ENSGALG00000001283 23820 0.869 - - - - - - 0.869 - - - serine and arginine repetitive matrix 1 [Source:NCBI gene;Acc:428216]
77. LEPROT ENSGALG00000011047 7132 0.869 - - - - - - 0.869 - - - leptin receptor overlapping transcript [Source:NCBI gene;Acc:424699]
78. RBBP4 ENSGALG00000003522 72455 0.866 - - - - - - 0.866 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
79. SBNO1 ENSGALG00000003392 6731 0.866 - - - - - - 0.866 - - - strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
80. RAD21 ENSGALG00000029523 25658 0.865 - - - - - - 0.865 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
81. MAGT1 ENSGALG00000007861 9105 0.865 - - - - - - 0.865 - - - magnesium transporter 1 [Source:NCBI gene;Acc:422332]
82. WDR61 ENSGALG00000003221 11352 0.865 - - - - - - 0.865 - - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
83. TOMM20 ENSGALG00000035299 23431 0.865 - - - - - - 0.865 - - - translocase of outer mitochondrial membrane 20 [Source:HGNC Symbol;Acc:HGNC:20947]
84. ORC5 ENSGALG00000008175 3426 0.864 - - - - - - - 0.864 - - origin recognition complex subunit 5 [Source:NCBI gene;Acc:417714]
85. KCTD2 ENSGALG00000007934 15085 0.864 - - - - - - 0.864 - - - potassium channel tetramerization domain containing 2 [Source:NCBI gene;Acc:422116]
86. GLRX5 ENSGALG00000011079 28943 0.863 - - - - - - 0.863 - - - glutaredoxin 5 [Source:NCBI gene;Acc:423440]
87. GSPT1 15580 0.862 - - - - - - 0.862 - - - G1 to S phase transition 1, transcript variant X1
88. MEMO1 ENSGALG00000010624 6722 0.862 - - - - - - 0.862 - - - mediator of cell motility 1 [Source:NCBI gene;Acc:421483]
89. NDUFAF1 ENSGALG00000008587 14779 0.862 - - - - - - 0.862 - - - NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
90. UQCRC1 ENSGALG00000005789 23201 0.861 - - - - - - 0.861 - - - ubiquinol-cytochrome c reductase core protein 1 [Source:HGNC Symbol;Acc:HGNC:12585]
91. TBL1X ENSGALG00000040006 28597 0.86 - - - - - - - 0.860 - - transducin beta like 1 X-linked [Source:NCBI gene;Acc:426045]
92. MOSPD1 ENSGALG00000006132 8503 0.859 - - - - - - 0.859 - - - motile sperm domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25235]
93. DNAJC1 ENSGALG00000007914 8028 0.859 - - - - - - - 0.859 - - DnaJ heat shock protein family (Hsp40) member C1 [Source:HGNC Symbol;Acc:HGNC:20090]
94. PSMD12 ENSGALG00000026225 17473 0.858 - - - - - - 0.858 - - - proteasome 26S subunit, non-ATPase 12 [Source:NCBI gene;Acc:417425]
95. TMEM30A ENSGALG00000015904 8533 0.856 - - - - - - - 0.856 - - transmembrane protein 30A [Source:NCBI gene;Acc:421861]
96. SMU1 ENSGALG00000002014 8136 0.853 - - - - - - 0.853 - - - SMU1, DNA replication regulator and spliceosomal factor [Source:NCBI gene;Acc:427377]
97. SEC22B ENSGALG00000039704 16080 0.852 - - - - - - 0.852 - - - SEC22 homolog B, vesicle trafficking protein [Source:NCBI gene;Acc:424377]
98. UFD1L 12964 0.852 - - - - - - 0.852 - - - ubiquitin fusion degradation 1 like (yeast)
99. EXO1 ENSGALG00000010748 7572 0.85 - - - - - - 0.850 - - - exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3511]
100. MPRIP ENSGALG00000004798 6700 0.85 - - - - - - 0.850 - - - myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]

There are 381 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA