Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CPSF3

Gene Name Gene ID Reads Annotation
CPSF3 ENSGALG00000016424 342 cleavage and polyadenylation specific factor 3 [Source:HGNC Symbol;Acc:HGNC:2326]











Genes with expression patterns similar to CPSF3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CPSF3 ENSGALG00000016424 342 8 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 cleavage and polyadenylation specific factor 3 [Source:HGNC Symbol;Acc:HGNC:2326]
2. IPMK ENSGALG00000002710 40 1.788 - - - - - - 1.000 - - 0.788 inositol polyphosphate multikinase [Source:HGNC Symbol;Acc:HGNC:20739]
3. AKAP10 ENSGALG00000004679 103 1.744 - - 0.911 - - - - - - 0.833 A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
4. RAD54L2 ENSGALG00000003243 187 1.699 - - 0.904 - - - - - - 0.795 RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
5. TUBGCP3 ENSGALG00000016836 332 1.695 - - 0.918 - - - - - - 0.777 tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
6. ENSGALG00000004703 ENSGALG00000004703 112 1.694 - - 0.910 - - - - 0.784 - -
7. ZCCHC8 ENSGALG00000004486 3201 1.685 - - 0.858 - - - - - - 0.827 zinc finger CCHC-type containing 8 [Source:NCBI gene;Acc:416862]
8. TMEM242 ENSGALG00000013689 377 1.658 - - 0.892 - - - - - - 0.766 transmembrane protein 242 [Source:HGNC Symbol;Acc:HGNC:17206]
9. DARS2 ENSGALG00000023749 2386 1.558 - - 0.804 - - - - - - 0.754 aspartyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25538]
10. COL19A1 ENSGALG00000043584 38 1 - - - - - - 1.000 - - - collagen type XIX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2196]
11. ANXA10 ENSGALG00000009573 1 1 - - - - - - 1.000 - - - annexin A10 [Source:HGNC Symbol;Acc:HGNC:534]
12. CAMK1 ENSGALG00000029912 6 1 - - - - - - 1.000 - - - calcium/calmodulin dependent protein kinase I [Source:HGNC Symbol;Acc:HGNC:1459]
13. ENSGALG00000004511 ENSGALG00000004511 2 1 - - - - - - 1.000 - - -
14. CACNG4 ENSGALG00000026091 6 1 - - - - - - 1.000 - - - calcium voltage-gated channel auxiliary subunit gamma 4 [Source:NCBI gene;Acc:373924]
15. H2AFX ENSGALG00000045705 7 1 - - - - - - 1.000 - - - H2A histone family member X
16. CELF4 ENSGALG00000002413 10 1 - - - - - - 1.000 - - - CUGBP Elav-like family member 4 [Source:HGNC Symbol;Acc:HGNC:14015]
17. C1orf116 ENSGALG00000001091 34 1 - - - - - - 1.000 - - - chromosome 1 open reading frame 116 [Source:HGNC Symbol;Acc:HGNC:28667]
18. PKIA ENSGALG00000035525 20 1 - - - - - - 1.000 - - - protein kinase (cAMP-dependent, catalytic) inhibitor alpha [Source:NCBI gene;Acc:396333]
19. SLC17A6 ENSGALG00000039254 16 1 - - - - - - 1.000 - - - solute carrier family 17 member 6 [Source:NCBI gene;Acc:422971]
20. CNGA4 ENSGALG00000022704 4 1 - - - - - - 1.000 - - - cyclic nucleotide gated channel alpha 4 [Source:HGNC Symbol;Acc:HGNC:2152]
21. ENSGALG00000015220 ENSGALG00000015220 1 1 - - - - - - 1.000 - - -
22. TMEM11 ENSGALG00000004749 206 1 - - - - - - 1.000 - - - transmembrane protein 11 [Source:NCBI gene;Acc:427663]
23. XRRA1 ENSGALG00000017310 2 1 - - - - - - 1.000 - - - X-ray radiation resistance associated 1 [Source:HGNC Symbol;Acc:HGNC:18868]
24. ENSGALG00000007135 ENSGALG00000007135 3 1 - - - - - - 1.000 - - -
25. CDC42EP3 ENSGALG00000010551 15 1 - - - - - - 1.000 - - - CDC42 effector protein 3 [Source:HGNC Symbol;Acc:HGNC:16943]
26. SPOCK3 ENSGALG00000009568 33 1 - - - - - - 1.000 - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:HGNC Symbol;Acc:HGNC:13565]
27. NPHS2 ENSGALG00000004163 850 1 - - - - - - 1.000 - - - NPHS2, podocin [Source:HGNC Symbol;Acc:HGNC:13394]
28. NR2C2AP ENSGALG00000027375 50 1 - - - - - - 1.000 - - - nuclear receptor 2C2 associated protein [Source:HGNC Symbol;Acc:HGNC:30763]
29. CRB1 ENSGALG00000002287 2 1 - - - - - - 1.000 - - - crumbs 1, cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:2343]
30. TRAF6 ENSGALG00000007932 12 1 - - - - - - 1.000 - - - TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]
31. TNIK ENSGALG00000009298 38 1 - - - - - - 1.000 - - - TRAF2 and NCK interacting kinase [Source:HGNC Symbol;Acc:HGNC:30765]
32. TJP3 ENSGALG00000000748 45 1 - - - - - - 1.000 - - - tight junction protein 3 [Source:HGNC Symbol;Acc:HGNC:11829]
33. MAST3 ENSGALG00000003499 21 1 - - - - - - 1.000 - - - microtubule associated serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:19036]
34. GUCY1B3 29 1 - - - - - - 1.000 - - - guanylate cyclase 1 soluble subunit beta, transcript variant X2
35. C11orf49 ENSGALG00000008255 36 1 - - - - - - 1.000 - - - chromosome 11 open reading frame 49 [Source:HGNC Symbol;Acc:HGNC:28720]
36. WDR27 ENSGALG00000037464 9 1 - - - - - - 1.000 - - - WD repeat domain 27
37. ATF6 ENSGALG00000032278 71 1 - - - - - - 1.000 - - - activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791]
38. CA9 ENSGALG00000021340 1431 0.945 - - 0.945 - - - - - - - carbonic anhydrase 9 [Source:HGNC Symbol;Acc:HGNC:1383]
39. LCMT1 ENSGALG00000005973 1300 0.939 - - 0.939 - - - - - - - leucine carboxyl methyltransferase 1 [Source:NCBI gene;Acc:416565]
40. MTHFSD ENSGALG00000033322 824 0.937 - - 0.937 - - - - - - - methenyltetrahydrofolate synthetase domain containing [Source:HGNC Symbol;Acc:HGNC:25778]
41. ATP10D ENSGALG00000014192 94 0.933 - - 0.933 - - - - - - - ATPase phospholipid transporting 10D (putative) [Source:HGNC Symbol;Acc:HGNC:13549]
42. SMARCAD1 ENSGALG00000037339 149 0.931 - - 0.931 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
43. RHOBTB1 ENSGALG00000003073 56 0.927 - - - - - - 0.927 - - - Rho related BTB domain containing 1 [Source:NCBI gene;Acc:423664]
44. HOXA7 ENSGALG00000026989 6746 0.923 - - 0.923 - - - - - - - homeobox A7 [Source:NCBI gene;Acc:395290]
45. MAP3K21 ENSGALG00000011008 54 0.919 - - - - - - 0.919 - - - mitogen-activated protein kinase kinase kinase 21 [Source:HGNC Symbol;Acc:HGNC:29798]
46. SNN ENSGALG00000028876 1687 0.917 - - 0.917 - - - - - - - stannin [Source:NCBI gene;Acc:416429]
47. C18orf8 C18orf8 1512 0.917 - - 0.917 - - - - - - -
48. GTF2H2 ENSGALG00000002399 2361 0.917 - - 0.917 - - - - - - - general transcription factor IIH subunit 2, transcript variant X2
49. CENPO ENSGALG00000016609 1699 0.916 - - 0.916 - - - - - - - centromere protein O [Source:NCBI gene;Acc:422014]
50. MED15 ENSGALG00000006430 814 0.915 - - 0.915 - - - - - - - mediator complex subunit 15 [Source:HGNC Symbol;Acc:HGNC:14248]
51. BBX ENSGALG00000015353 1281 0.914 - - 0.914 - - - - - - - BBX, HMG-box containing [Source:HGNC Symbol;Acc:HGNC:14422]
52. SZT2 ENSGALG00000028561 255 0.914 - - 0.914 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
53. MRC2 ENSGALG00000000461 48 0.913 - - 0.913 - - - - - - - mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
54. PTDSS2 ENSGALG00000004300 682 0.913 - - 0.913 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
55. ENSGALG00000028964 ENSGALG00000028964 46 0.913 - - 0.913 - - - - - - -
56. NXPE3 ENSGALG00000015344 111 0.913 - - 0.913 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
57. TDRD6 48 0.913 - - 0.913 - - - - - - - tudor domain containing 6
58. RQCD1 RQCD1 110 0.913 - - 0.913 - - - - - - -
59. TOP2A ENSGALG00000003922 7726 0.913 - - 0.913 - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
60. UEVLD ENSGALG00000006342 164 0.913 - - 0.913 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
61. UBE2E3 ENSGALG00000020793 9517 0.913 - - 0.913 - - - - - - - ubiquitin conjugating enzyme E2 E3 [Source:NCBI gene;Acc:424122]
62. PSMD14 ENSGALG00000011128 13335 0.913 - - 0.913 - - - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
63. ITGB4 ENSGALG00000002389 44 0.913 - - 0.913 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
64. ENSGALG00000020103 ENSGALG00000020103 64 0.912 - - 0.912 - - - - - - -
65. ENSGALG00000002020 ENSGALG00000002020 183 0.912 - - 0.912 - - - - - - -
66. MED12 ENSGALG00000036322 814 0.912 - - 0.912 - - - - - - - mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
67. CGNL1 ENSGALG00000004294 1177 0.911 - - 0.911 - - - - - - - cingulin like 1 [Source:HGNC Symbol;Acc:HGNC:25931]
68. CLEC16A ENSGALG00000007167 66 0.911 - - 0.911 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
69. NGF ENSGALG00000002556 122 0.911 - - 0.911 - - - - - - - nerve growth factor [Source:NCBI gene;Acc:396466]
70. U4 U4 69 0.911 - - 0.911 - - - - - - -
71. CDC14B ENSGALG00000012627 110 0.911 - - 0.911 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
72. ABCC3 ENSGALG00000007522 340 0.911 - - 0.911 - - - - - - - ATP binding cassette subfamily C member 3, transcript variant X5
73. DBN1 ENSGALG00000033405 216 0.91 - - 0.910 - - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
74. NACAD 679 0.91 - - 0.910 - - - - - - - NAC alpha domain containing, transcript variant X1
75. SERPINC1 ENSGALG00000004591 68 0.91 - - - - - - 0.910 - - - Gallus gallus serpin family C member 1 (SERPINC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001353945]
76. ZC3H11A ENSGALG00000000541 2712 0.91 - - 0.910 - - - - - - - zinc finger CCCH-type containing 11A [Source:NCBI gene;Acc:421172]
77. L3MBTL3 ENSGALG00000034030 113 0.91 - - 0.910 - - - - - - - L3MBTL3, histone methyl-lysine binding protein [Source:HGNC Symbol;Acc:HGNC:23035]
78. OSGIN2 ENSGALG00000042840 83 0.91 - - 0.910 - - - - - - - oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]
79. ITM2B ENSGALG00000016996 1112 0.91 - - 0.910 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
80. SNX14 ENSGALG00000015831 2554 0.91 - - 0.910 - - - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
81. ERCC3 ENSGALG00000011515 3133 0.909 - - 0.909 - - - - - - - ERCC excision repair 3, TFIIH core complex helicase subunit [Source:NCBI gene;Acc:424226]
82. F2R ENSGALG00000014983 106 0.909 - - 0.909 - - - - - - - coagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]
83. FBXL5 ENSGALG00000014510 245 0.909 - - 0.909 - - - - - - - F-box and leucine rich repeat protein 5 [Source:HGNC Symbol;Acc:HGNC:13602]
84. SLC3A1 ENSGALG00000009973 608 0.909 - - 0.909 - - - - - - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
85. WHSC1 1712 0.908 - - 0.908 - - - - - - - Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
86. CAMSAP1 ENSGALG00000001692 2617 0.908 - - 0.908 - - - - - - - calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
87. TRIM13 ENSGALG00000017011 92 0.907 - - 0.907 - - - - - - - tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
88. EMP1 ENSGALG00000011803 351 0.907 - - 0.907 - - - - - - - epithelial membrane protein 1 [Source:NCBI gene;Acc:417964]
89. GDPD4 ENSGALG00000000690 824 0.906 - - 0.906 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
90. TCTN2 ENSGALG00000023683 3596 0.906 - - 0.906 - - - - - - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
91. ATF7IP ENSGALG00000011814 1571 0.905 - - 0.905 - - - - - - - activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
92. TFAP2C ENSGALG00000007690 768 0.905 - - 0.905 - - - - - - - transcription factor AP-2 gamma [Source:HGNC Symbol;Acc:HGNC:11744]
93. RALGDS ENSGALG00000003412 4478 0.905 - - 0.905 - - - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
94. FTD FTD 3041 0.905 - - 0.905 - - - - - - -
95. KCTD10 ENSGALG00000005138 1191 0.904 - - 0.904 - - - - - - - potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:HGNC:23236]
96. LRRC71 ENSGALG00000027351 695 0.903 - - 0.903 - - - - - - - leucine rich repeat containing 71 [Source:HGNC Symbol;Acc:HGNC:26556]
97. CHAMP1 ENSGALG00000016813 508 0.902 - - 0.902 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
98. HINT3 ENSGALG00000044342 5674 0.902 - - 0.902 - - - - - - - histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:HGNC:18468]
99. PLK2 ENSGALG00000014725 1736 0.902 - - 0.902 - - - - - - - polo like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19699]
100. LRRC42 ENSGALG00000010743 384 0.901 - - 0.901 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]

There are 580 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA