Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL9A3

Gene Name Gene ID Reads Annotation
COL9A3 ENSGALG00000005628 2842 collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]











Genes with expression patterns similar to COL9A3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. COL9A3 ENSGALG00000005628 2842 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
2. C9H2ORF82 ENSGALG00000040264 4201 7.92 - 0.806 0.946 0.898 0.913 0.966 0.887 0.906 0.805 0.793 chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
3. COL8A1 ENSGALG00000015253 2505 7.602 - 0.737 0.910 0.887 0.899 0.874 0.913 0.908 0.763 0.711 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
4. COL9A2 ENSGALG00000027526 4685 6.759 - 0.811 0.928 0.885 0.853 0.746 0.840 0.896 0.800 - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
5. LECT1 LECT1 12694 6.715 - 0.700 0.853 0.840 0.854 - 0.899 0.883 0.847 0.839
6. SCARA3 ENSGALG00000026651 2559 6.637 - 0.824 0.929 0.807 0.850 0.865 0.816 0.792 0.754 - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
7. COL9A1 ENSGALG00000015970 3788 5.928 - - 0.918 0.823 0.901 0.856 0.929 - 0.801 0.700 collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
8. TIMP3 ENSGALG00000028627 8706 5.894 - - 0.886 0.875 0.725 0.954 0.807 0.936 0.711 - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
9. SST ENSGALG00000007361 1383 5.877 - - 0.949 0.803 0.880 - 0.816 0.884 0.731 0.814 somatostatin [Source:NCBI gene;Acc:396279]
10. SPON2 ENSGALG00000038433 1240 5.782 - 0.782 - 0.757 - 0.897 0.817 0.965 0.801 0.763 spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
11. OCA2 ENSGALG00000016740 421 5.751 - - - 0.811 0.779 0.890 0.738 0.951 0.725 0.857 OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
12. OSF-2 OSF-2 10433 5.604 - - 0.804 0.732 0.729 0.773 0.886 0.903 - 0.777
13. TAC1 ENSGALG00000009737 2211 5.251 - 0.731 0.956 0.936 - 0.955 0.813 0.860 - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
14. EMILIN3 ENSGALG00000030012 6200 5.21 - - 0.872 0.894 0.877 0.915 0.888 - 0.764 - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
15. RAB38 ENSGALG00000028018 1046 5.209 - - 0.895 0.845 0.818 0.829 0.890 0.932 - - RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
16. WWP2 ENSGALG00000000699 5040 4.808 - 0.708 0.899 - - 0.706 0.882 - 0.805 0.808 WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
17. T ENSGALG00000011489 2619 4.545 - - 0.944 0.870 0.853 0.954 0.924 - - - T brachyury transcription factor [Source:NCBI gene;Acc:395782]
18. SAMD3 ENSGALG00000032409 459 4.185 - - - 0.817 0.721 0.848 0.835 0.964 - - sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
19. SHH ENSGALG00000006379 1943 3.97 - - 0.855 0.744 - - 0.846 0.727 0.798 - sonic hedgehog [Source:NCBI gene;Acc:395615]
20. SOX9 ENSGALG00000004386 14802 3.907 - - 0.854 0.713 0.794 - 0.760 - 0.786 - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
21. ACAN ENSGALG00000006725 184 3.577 - - - - - 0.977 - 0.841 0.838 0.921 aggrecan [Source:NCBI gene;Acc:395798]
22. CYP1B1 ENSGALG00000025822 3143 3.265 - 0.747 0.882 - - - - - 0.843 0.793 cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
23. ENSGALG00000010113 ENSGALG00000010113 508 3.149 - - 0.850 - 0.703 - 0.825 - 0.771 -
24. SCIN ENSGALG00000010770 883 3.135 - - 0.823 0.741 - 0.786 0.785 - - - scinderin [Source:NCBI gene;Acc:420588]
25. SPON1 ENSGALG00000038775 16503 2.997 - - 0.785 - 0.718 - 0.745 - 0.749 - spondin 1 [Source:NCBI gene;Acc:395657]
26. SLC15A5 ENSGALG00000013097 213 2.991 - - - - 0.760 0.726 0.733 - - 0.772 solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
27. PAX1 ENSGALG00000039040 3339 2.509 - - 0.921 - 0.821 - - - - 0.767 paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
28. LRRTM1 ENSGALG00000015967 85 2.496 - - 0.801 - - 0.889 - 0.806 - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
29. ZNF385B ENSGALG00000009012 290 2.407 - - 0.871 - - 0.822 - 0.714 - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
30. SMOC1 ENSGALG00000009415 2403 2.391 - - 0.824 - - - - - 0.834 0.733 SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
31. EPB41L3 ENSGALG00000038678 5863 2.329 - - 0.851 0.758 - - 0.720 - - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
32. ENSGALG00000014190 ENSGALG00000014190 5735 2.247 - - 0.732 0.733 - 0.782 - - - -
33. AIF1L ENSGALG00000029834 13866 2.232 - - 0.705 - - - 0.758 - - 0.769 allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
34. PCDH17 ENSGALG00000016941 1006 1.741 - - - - - 0.869 - 0.872 - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
35. UPK3A ENSGALG00000014227 7 1.682 - - - - - 0.876 - 0.806 - - uroplakin 3A [Source:HGNC Symbol;Acc:HGNC:12580]
36. B3GNT7 ENSGALG00000007701 929 1.674 - - - 0.756 - 0.918 - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
37. FNDC1 ENSGALG00000011663 1040 1.663 - - - - - - - 0.937 - 0.726 fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
38. POMC ENSGALG00000016600 99 1.641 - - - - 0.800 - - 0.841 - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
39. RRAD ENSGALG00000005140 183 1.635 - - - - - 0.924 0.711 - - - RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
40. C1QTNF3 ENSGALG00000027887 8646 1.632 - - 0.810 - 0.822 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
41. ENSGALG00000008822 ENSGALG00000008822 221 1.609 - - 0.769 - - 0.840 - - - -
42. HPGDS ENSGALG00000010402 343 1.601 - - 0.725 - - 0.876 - - - - hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
43. CRIP1 ENSGALG00000002771 4270 1.579 - - 0.804 - - - - - 0.775 - cysteine rich protein 1 [Source:NCBI gene;Acc:101747696]
44. NPY7R ENSGALG00000021303 215 1.577 - - - 0.773 - 0.804 - - - - neuropeptide Y7 receptor [Source:NCBI gene;Acc:416280]
45. SCARA5 ENSGALG00000016580 712 1.564 - - - - - 0.758 - 0.806 - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
46. TXNRD1 ENSGALG00000035345 4784 1.564 - - 0.754 0.810 - - - - - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
47. CCK ENSGALG00000029788 213 1.539 - - - - - 0.820 - - 0.719 - cholecystokinin [Source:NCBI gene;Acc:414884]
48. MYOG ENSGALG00000000172 460 1.535 - - - - 0.702 - - - 0.833 - myogenin [Source:NCBI gene;Acc:374004]
49. ZNF536 ENSGALG00000035602 1127 1.525 - - - 0.755 - - 0.770 - - - zinc finger protein 536 [Source:HGNC Symbol;Acc:HGNC:29025]
50. SERPINE2 ENSGALG00000005135 16108 1.524 - - - 0.744 - - - - - 0.780 serpin family E member 2 [Source:NCBI gene;Acc:424805]
51. RGS4 ENSGALG00000002564 201 1.516 - - - - - 0.711 0.805 - - - regulator of G-protein signaling 4 [Source:NCBI gene;Acc:378901]
52. ACBD7 ENSGALG00000019663 2328 1.505 - - 0.798 - 0.707 - - - - - acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:HGNC:17715]
53. SLC24A4 ENSGALG00000010793 238 1.489 - - - - - - - 0.756 0.733 - solute carrier family 24 member 4 [Source:HGNC Symbol;Acc:HGNC:10978]
54. CDH4 ENSGALG00000005102 3446 1.485 - - - - - - - - 0.773 0.712 cadherin 4 [Source:NCBI gene;Acc:419222]
55. SPOCK1 ENSGALG00000006258 2892 1.475 - - 0.760 - - - - - - 0.715 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:HGNC Symbol;Acc:HGNC:11251]
56. TNFIP6 TNFIP6 3024 1.464 - - - - - - 0.726 - - 0.738
57. TSPAN7 ENSGALG00000016251 6674 1.44 - 0.724 0.716 - - - - - - - tetraspanin 7, transcript variant X2
58. SLC6A1 ENSGALG00000004921 118 1.417 - - - - - - - 0.713 - 0.704 solute carrier family 6 member 1 [Source:HGNC Symbol;Acc:HGNC:11042]
59. CCL17 ENSGALG00000024466 10 0.977 - - - - - 0.977 - - - - C-C motif chemokine ligand 17 [Source:NCBI gene;Acc:415652]
60. PIGM ENSGALG00000010768 41 0.931 - - - - - - - 0.931 - - phosphatidylinositol glycan anchor biosynthesis class M [Source:NCBI gene;Acc:428583]
61. RASGRF2 ENSGALG00000015598 30 0.931 - - - - - - - 0.931 - - Ras protein specific guanine nucleotide releasing factor 2 [Source:HGNC Symbol;Acc:HGNC:9876]
62. GPR158 ENSGALG00000007667 111 0.93 - - - - - - - 0.930 - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
63. GNOT1 GNOT1 22 0.926 - - - - - - - 0.926 - -
64. PCDH12 ENSGALG00000002544 36 0.901 - - - - - - - 0.901 - - protocadherin 12 [Source:HGNC Symbol;Acc:HGNC:8657]
65. PALMD ENSGALG00000005442 901 0.901 - - - - - - - - - 0.901 palmdelphin [Source:NCBI gene;Acc:424475]
66. DCLRE1B ENSGALG00000028626 48 0.893 - - - - - - - 0.893 - - DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
67. APOD ENSGALG00000006995 2 0.892 - - - - - 0.892 - - - - apolipoprotein D [Source:NCBI gene;Acc:424893]
68. RGS18 ENSGALG00000021143 120 0.892 - - - - - 0.892 - - - - regulator of G-protein signaling 18 [Source:NCBI gene;Acc:424361]
69. KCNG1 ENSGALG00000007980 26 0.892 - - - - - 0.892 - - - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
70. HOXA10 ENSGALG00000026631 1 0.892 - - - - - 0.892 - - - - homeobox A10 [Source:NCBI gene;Acc:776143]
71. FGF23 ENSGALG00000027791 9 0.876 - - - - - 0.876 - - - - fibroblast growth factor 23 [Source:HGNC Symbol;Acc:HGNC:3680]
72. LEPR ENSGALG00000011058 4 0.876 - - - - - 0.876 - - - - leptin receptor [Source:NCBI gene;Acc:374223]
73. KIAA1841 ENSGALG00000007825 22 0.876 - - - - - 0.876 - - - - KIAA1841 [Source:NCBI gene;Acc:421196]
74. ARHGAP44 ENSGALG00000001311 0 0.876 - - - - - 0.876 - - - - Rho GTPase activating protein 44, transcript variant X4
75. PKD1 ENSGALG00000005714 0 0.876 - - - - - 0.876 - - - - polycystin 1, transient receptor potential channel interacting [Source:HGNC Symbol;Acc:HGNC:9008]
76. SLC13A5 ENSGALG00000005995 23 0.876 - - - - - 0.876 - - - - solute carrier family 13 member 5 [Source:HGNC Symbol;Acc:HGNC:23089]
77. NLRC3 ENSGALG00000033278 11 0.876 - - - - - 0.876 - - - - NLR family CARD domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29889]
78. HHATL ENSGALG00000005297 0 0.876 - - - - - 0.876 - - - - hedgehog acyltransferase-like [Source:NCBI gene;Acc:420391]
79. NFIL3 ENSGALG00000015209 15 0.876 - - - - - 0.876 - - - - nuclear factor, interleukin 3 regulated [Source:NCBI gene;Acc:395326]
80. DD1 DD1 4 0.876 - - - - - 0.876 - - - -
81. ENSGALG00000004753 ENSGALG00000004753 63 0.876 - - - - - 0.876 - - - -
82. GPR174 ENSGALG00000004111 16 0.876 - - - - - 0.876 - - - - G protein-coupled receptor 174 [Source:NCBI gene;Acc:422146]
83. U5 U5 1 0.876 - - - - - 0.876 - - - -
84. CALR3 ENSGALG00000003914 8 0.876 - - - - - 0.876 - - - - calreticulin 3 [Source:HGNC Symbol;Acc:HGNC:20407]
85. ENSGALG00000025736 ENSGALG00000025736 3 0.876 - - - - - 0.876 - - - -
86. NRAP ENSGALG00000008914 24 0.876 - - - - - 0.876 - - - - nebulin related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
87. PABPC1L ENSGALG00000004123 2 0.876 - - - - - 0.876 - - - - poly(A) binding protein cytoplasmic 1 like [Source:HGNC Symbol;Acc:HGNC:15797]
88. UNC13B ENSGALG00000002165 3 0.876 - - - - - 0.876 - - - - unc-13 homolog B [Source:HGNC Symbol;Acc:HGNC:12566]
89. NEGR1 ENSGALG00000011350 6 0.876 - - - - - 0.876 - - - - neuronal growth regulator 1 [Source:NCBI gene;Acc:395662]
90. PLEKHG7 ENSGALG00000011277 3 0.876 - - - - - 0.876 - - - - pleckstrin homology and RhoGEF domain containing G7 [Source:HGNC Symbol;Acc:HGNC:33829]
91. IL8 ENSGALG00000026098 16 0.876 - - - - - 0.876 - - - - interleukin 8-like 2 [Source:NCBI gene;Acc:396495]
92. AGO2 ENSGALG00000040957 25 0.876 - - - - - 0.876 - - - - argonaute 2, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3263]
93. LZTS3 ENSGALG00000016001 3 0.876 - - - - - 0.876 - - - - leucine zipper tumor suppressor family member 3 [Source:HGNC Symbol;Acc:HGNC:30139]
94. EVI2A ENSGALG00000039084 13 0.876 - - - - - 0.876 - - - - ecotropic viral integration site 2A [Source:NCBI gene;Acc:776037]
95. gga-mir-22 ENSGALG00000024507 2 0.876 - - - - - 0.876 - - - - gga-mir-22 [Source:miRBase;Acc:MI0006982]
96. ENSGALG00000009041 ENSGALG00000009041 27 0.876 - - - - - 0.876 - - - -
97. KCNH4 ENSGALG00000003354 0 0.876 - - - - - 0.876 - - - - potassium voltage-gated channel subfamily H member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
98. ENSGALG00000020661 ENSGALG00000020661 1 0.876 - - - - - 0.876 - - - -
99. DHX58 ENSGALG00000023821 15 0.876 - - - - - 0.876 - - - - Gallus gallus DExH-box helicase 58 (DHX58), mRNA. [Source:RefSeq mRNA;Acc:NM_001318408]
100. ENSGALG00000028239 ENSGALG00000028239 0 0.876 - - - - - 0.876 - - - -

There are 181 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA